| |
| """Migrate the prebuilt copernicus-rag-core Qdrant indexes into a Qdrant SERVER. |
| |
| Downloads indexes/*.tar.gz from the HF dataset (or uses --source-dir if you |
| already have them), opens each embedded index locally, and streams every |
| collection into the target server: identical vectors (dense 768 + sparse BM25), |
| identical payloads (incl. the relinked publication<->dataset fields), identical |
| payload indexes. No embedding model or API key of any kind is needed. |
| |
| Usage: |
| python load_all.py --url http://localhost:6333 |
| python load_all.py --url http://localhost:6333 --collections publications |
| python load_all.py --url https://<cluster>.cloud.qdrant.io --api-key <key> |
| python load_all.py --url ... --source-dir ./indexes_untarred # skip download |
| |
| Resumable: a collection already on the server with the full point count is |
| skipped; pass --recreate to force a clean re-copy. |
| """ |
| import argparse |
| import os |
| import sys |
| import tarfile |
| import tempfile |
| import time |
| from pathlib import Path |
|
|
| from qdrant_client import QdrantClient, models |
|
|
| REPO = "dmpantiu/copernicus-rag-core" |
| TARBALLS = { |
| "qdrant_marine_and_cards.tar.gz": ["marine_docs", "copernicus_docs"], |
| "qdrant_cds_docs.tar.gz": ["cds_docs"], |
| "qdrant_eqc_qa.tar.gz": ["eqc_qa"], |
| "qdrant_publications.tar.gz": ["publications"], |
| } |
| BATCH = 512 |
|
|
| |
| |
| K, I, B = "keyword", "integer", "bool" |
| PAYLOAD_INDEXES = { |
| "marine_docs": {"product_id": K, "doc_type": K, "chunk_type": K, "section_path": K}, |
| "copernicus_docs": {"product_id": K, "doc_type": K, "store": K}, |
| "cds_docs": {"dataset_ids": K, "store": K, "doc_type": K, "doc_url": K}, |
| "eqc_qa": {"dataset_id": K, "store": K, "doc_type": K, "aspect": K}, |
| "publications": {"doi": K, "paper_id": K, "journal": K, "year": I, |
| "domains": K, "orphan": B, "linked_products": K, "chunk_type": K}, |
| } |
|
|
|
|
| def log(msg): |
| print(f"[load_all] {msg}", flush=True) |
|
|
|
|
| def fetch_and_untar(work: Path, only: set[str] | None) -> dict[str, Path]: |
| """Download needed tarballs from HF and untar. Returns {tarball: qdrant_db dir}.""" |
| from huggingface_hub import hf_hub_download |
| token = os.environ.get("HF_TOKEN") |
| if not token: |
| sys.exit("HF_TOKEN env var required to download the private dataset " |
| "(or pre-download and use --source-dir).") |
| out = {} |
| for tb, colls in TARBALLS.items(): |
| if only and not (set(colls) & only): |
| continue |
| dest = work / tb.replace(".tar.gz", "") |
| if (dest / "qdrant_db").exists(): |
| log(f"{tb}: already untarred, reusing") |
| else: |
| log(f"downloading {tb} ...") |
| p = hf_hub_download(REPO, f"indexes/{tb}", repo_type="dataset", |
| token=token, local_dir=work / "_dl") |
| dest.mkdir(parents=True, exist_ok=True) |
| log(f"untarring {tb} ...") |
| with tarfile.open(p) as t: |
| t.extractall(dest) |
| out[tb] = dest / "qdrant_db" |
| return out |
|
|
|
|
| def source_dirs(src: Path, only: set[str] | None) -> dict[str, Path]: |
| """Use pre-untarred dirs: <src>/<tarball-stem>/qdrant_db.""" |
| out = {} |
| for tb, colls in TARBALLS.items(): |
| if only and not (set(colls) & only): |
| continue |
| d = src / tb.replace(".tar.gz", "") / "qdrant_db" |
| if not d.exists(): |
| sys.exit(f"missing {d} — untar indexes/{tb} there, " |
| f"or drop --source-dir to auto-download") |
| out[tb] = d |
| return out |
|
|
|
|
| def migrate_collection(local: QdrantClient, remote: QdrantClient, |
| coll: str, recreate: bool): |
| info = local.get_collection(coll) |
| total = local.count(coll).count |
|
|
| skip_first = 0 |
| if remote.collection_exists(coll): |
| have = remote.count(coll).count |
| if have == total and not recreate: |
| log(f"{coll}: server already has {have}/{total} points — skip " |
| f"(--recreate to force)") |
| return |
| if recreate or have == 0 or have > total: |
| log(f"{coll}: server has {have}/{total} — recreating") |
| remote.delete_collection(coll) |
| else: |
| |
| |
| skip_first = max(0, have - 8 * BATCH) |
| log(f"{coll}: server has {have}/{total} — resuming from " |
| f"~{skip_first} (with overlap)") |
|
|
| if not remote.collection_exists(coll): |
| remote.create_collection( |
| collection_name=coll, |
| vectors_config=info.config.params.vectors, |
| sparse_vectors_config=info.config.params.sparse_vectors, |
| on_disk_payload=True, |
| ) |
| indexes = {f: s.data_type for f, s in (info.payload_schema or {}).items()} |
| if not indexes: |
| indexes = PAYLOAD_INDEXES.get(coll, {}) |
| for field, schema in indexes.items(): |
| remote.create_payload_index(collection_name=coll, field_name=field, |
| field_schema=schema) |
| log(f"{coll}: created (vectors={list(info.config.params.vectors)}, " |
| f"sparse={list(info.config.params.sparse_vectors or {})}, " |
| f"payload indexes={list(indexes)})") |
|
|
| done, seen, offset, t0 = 0, 0, None, time.time() |
| while True: |
| points, offset = local.scroll(coll, limit=BATCH, offset=offset, |
| with_payload=True, with_vectors=True) |
| if not points: |
| break |
| seen += len(points) |
| if seen > skip_first: |
| batch = points if seen - len(points) >= skip_first else \ |
| points[-(seen - skip_first):] |
| remote.upsert(coll, wait=False, points=[ |
| models.PointStruct(id=p.id, vector=p.vector, payload=p.payload) |
| for p in batch]) |
| done += len(batch) |
| if seen % (BATCH * 40) == 0 or offset is None: |
| rate = done / max(time.time() - t0, 1e-9) |
| log(f"{coll}: {skip_first + done}/{total} ({rate:.0f} pts/s live)") |
| if offset is None: |
| break |
| time.sleep(2) |
|
|
| got = remote.count(coll).count |
| status = "OK" if got == total else "MISMATCH" |
| log(f"{coll}: {status} — server {got} / source {total}") |
| if got != total: |
| sys.exit(f"{coll}: point count mismatch, aborting") |
|
|
|
|
| def main(): |
| ap = argparse.ArgumentParser() |
| ap.add_argument("--url", required=True, help="Qdrant server URL, e.g. http://localhost:6333") |
| ap.add_argument("--api-key", default=None) |
| ap.add_argument("--source-dir", default=None, |
| help="dir with pre-untarred indexes (skips HF download)") |
| ap.add_argument("--collections", nargs="*", default=None, |
| help="subset, e.g. --collections publications eqc_qa") |
| ap.add_argument("--recreate", action="store_true") |
| a = ap.parse_args() |
|
|
| only = set(a.collections) if a.collections else None |
| remote = QdrantClient(url=a.url, api_key=a.api_key, timeout=120) |
| remote.get_collections() |
|
|
| if a.source_dir: |
| dirs = source_dirs(Path(a.source_dir), only) |
| else: |
| work = Path(tempfile.gettempdir()) / "copernicus_rag_indexes" |
| work.mkdir(parents=True, exist_ok=True) |
| log(f"workdir: {work}") |
| dirs = fetch_and_untar(work, only) |
|
|
| for tb, db_dir in dirs.items(): |
| log(f"opening embedded index {db_dir}") |
| local = QdrantClient(path=str(db_dir)) |
| try: |
| for coll in TARBALLS[tb]: |
| if only and coll not in only: |
| continue |
| migrate_collection(local, remote, coll, a.recreate) |
| finally: |
| local.close() |
|
|
| log("ALL DONE. Server collections:") |
| for c in remote.get_collections().collections: |
| log(f" {c.name}: {remote.count(c.name).count} points") |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|