#!/usr/bin/env python3 """ chunk_docs.py — section-aware chunking of the fetched CDS/ADS/EWDS deep docs. Mirrors eqc_qa/chunk_reports.py. One chunk-set per UNIQUE doc (a doc shared by several datasets is chunked once; its chunks carry dataset_ids[] = all datasets that reference it, so the server can filter per dataset). Input : deep_docs/manifest.jsonl (status==ok rows) + their parsed/*.md Output: deep_docs/chunks.jsonl — payload: chunk_id, doc_url, doc_title, doc_kind, dataset_ids[], store, stores[], section, chunk_index, token_count, text_raw, text_with_prefix """ import hashlib import json import re import sys from pathlib import Path import tiktoken ROOT = Path(__file__).resolve().parent.parent MANIFEST = ROOT / "deep_docs" / "manifest.jsonl" OUT = ROOT / "deep_docs" / "chunks.jsonl" META = ROOT / "meta_harvest" / "unified_metadata.json" MAX_TOKENS = 1000 MIN_QUALITY_TOKENS = 30 MIN_TOKENS = 80 OVERLAP_RATIO = 0.05 _enc = tiktoken.get_encoding("cl100k_base") def log(*a): print(*a, file=sys.stderr, flush=True) def count_tokens(t): return len(_enc.encode(t)) HEADING = re.compile(r"^(#{1,4})\s+(.*)$") def parse_sections(md): lines = md.splitlines() stack, cur_path, buf, sections, in_fence = [], "[intro]", [], [], False def flush(): body = "\n".join(buf).strip() if body: sections.append((cur_path, body)) for ln in lines: if ln.lstrip().startswith("```"): in_fence = not in_fence; buf.append(ln); continue m = None if in_fence else HEADING.match(ln) if m: flush(); buf = [] level = len(m.group(1)) title = re.sub(r"[#*`]", "", m.group(2)).strip() while stack and stack[-1][0] >= level: stack.pop() stack.append((level, title)) cur_path = " > ".join(t for _, t in stack) or "[section]" else: buf.append(ln) flush() return sections def split_by_tokens(text, max_tokens): paras = re.split(r"\n\s*\n", text) chunks, cur, cur_tok = [], [], 0 for p in paras: p = p.strip() if not p: continue pt = count_tokens(p) if pt > max_tokens: if cur: chunks.append("\n\n".join(cur)); cur, cur_tok = [], 0 ids = _enc.encode(p) for i in range(0, len(ids), max_tokens): chunks.append(_enc.decode(ids[i:i + max_tokens])) continue if cur_tok + pt > max_tokens and cur: chunks.append("\n\n".join(cur)); cur, cur_tok = [], 0 cur.append(p); cur_tok += pt if cur: chunks.append("\n\n".join(cur)) return chunks def add_overlap(chunks, ratio): if len(chunks) < 2 or ratio <= 0: return chunks out = [chunks[0]] for i in range(1, len(chunks)): ptoks = _enc.encode(chunks[i - 1]) n = max(1, int(len(ptoks) * ratio)) out.append(_enc.decode(ptoks[-n:]) + "\n\n" + chunks[i]) return out def main(): meta = json.loads(META.read_text()) if META.exists() else {} store_of = {} for k, v in meta.items(): pid = v.get("product_id") or k store_of[pid] = (v.get("store") or "").upper() recs = [json.loads(l) for l in MANIFEST.read_text().splitlines() if l.strip()] ok = [r for r in recs if r["status"] == "ok" and r.get("md_path")] # dedup by url seen_url = {} for r in ok: seen_url[r["url"]] = r log(f"chunking {len(seen_url)} unique docs") n_docs = n_chunks = 0 with open(OUT, "w", encoding="utf-8") as f: for url, r in seen_url.items(): p = ROOT / r["md_path"] if not p.exists(): continue md = p.read_text(encoding="utf-8", errors="replace") dsids = sorted(set(r["datasets"])) stores = sorted({store_of.get(d, "") for d in dsids} - {""}) store = stores[0] if stores else "CDS" title = r.get("title") or "" counter = 0 seen_h = set() for section, body in parse_sections(md): body = re.sub(r"\n{3,}", "\n\n", body).strip() if not body: continue raw = split_by_tokens(body, MAX_TOKENS) if len(raw) > 1: raw = add_overlap(raw, OVERLAP_RATIO) for ct in raw: ct = ct.strip() if count_tokens(ct) < MIN_QUALITY_TOKENS: continue h = hashlib.md5(ct.encode()).hexdigest() if h in seen_h: continue seen_h.add(h) prefix = (f'Copernicus documentation: "{title}"\n' f'Dataset(s): {", ".join(dsids[:6])} [{store}]\n' f'Section: {section}\n---\n') twp = prefix + ct f.write(json.dumps({ "chunk_id": f"{hashlib.md5(url.encode()).hexdigest()[:12]}__{h[:12]}", "doc_url": url, "doc_title": title, "doc_kind": r.get("kind"), "dataset_ids": dsids, "store": store, "stores": stores, "doc_type": "DEEP_DOC", "section": section, "chunk_index": counter, "token_count": count_tokens(twp), "text_raw": ct, "text_with_prefix": twp, }, ensure_ascii=False) + "\n") counter += 1 n_docs += 1 n_chunks += counter toks = sum(json.loads(l)["token_count"] for l in open(OUT)) log(f"DONE: {n_docs} docs -> {n_chunks} chunks ({toks:,} tokens) -> {OUT}") log(f"est batch embed ${toks/1e6*0.125:.2f} (realtime ${toks/1e6*0.25:.2f})") if __name__ == "__main__": main()