#!/usr/bin/env python3 """ embed_reports.py — embed EQC QA chunks with gemini-embedding-2-preview. LOCKED: gemini-embedding-2-preview, RETRIEVAL_DOCUMENT, 768-dim, L2-normalized. IPv4 egress forced (net_ipv4). Key = veretex_api_key in ../.env. Modes: realtime (default) — resumable streaming; on sustained 429 print how to fall back to batch and exit non-zero. batch — submit Gemini Batch API job (schema mirrors marine_rag/embed.py), resumable via --mode poll. Sentinel EMBED_DONE written when >=99%. Usage: embed_reports.py # realtime embed_reports.py --mode batch # submit batch job embed_reports.py --mode poll # download completed batch job """ import argparse import json import os import sys import time from pathlib import Path import numpy as np # force IPv4 (reuse marine_rag net_ipv4) sys.path.insert(0, "/Users/dmpantiu/copernicus_mcp/marine_rag") import net_ipv4 # noqa: F401,E402 ROOT = Path(__file__).resolve().parent IN = ROOT / "chunks.jsonl" OUT = ROOT / "chunks_embedded.jsonl" BATCH_INPUT = ROOT / "batch_embed_input.jsonl" JOB_FILE = ROOT / "batch_job.txt" SENTINEL = ROOT / "EMBED_DONE" MODEL = "gemini-embedding-2-preview" TASK = "RETRIEVAL_DOCUMENT" DIM = 768 # Free-tier gemini-embedding-2 quota is tiny/fluctuating and counts per content. # Keep requests small and well-spaced; the finisher loops passes until complete. RT_BATCH = 5 RT_SLEEP = 20.0 def log(*a): print(*a, file=sys.stderr, flush=True) def resolve_key() -> str: for var in ("GOOGLE_API_KEY", "GEMINI_API_KEY"): if os.environ.get(var): return os.environ[var] for env in (Path("/Users/dmpantiu/copernicus_mcp/.env"), Path("/Users/dmpantiu/cmip6/cmip6_gpt/.env")): if env.exists(): for line in env.read_text().splitlines(): line = line.strip() if "api_key" in line.lower() and "=" in line and not line.startswith("#"): return line.split("=", 1)[1].strip().strip('"').strip("'") raise SystemExit("No Gemini API key found.") def get_client(): from google import genai return genai.Client(api_key=resolve_key()) def l2(vec): a = np.array(vec, dtype=np.float32) n = np.linalg.norm(a) return (a / n).tolist() if n > 0 else a.tolist() def load_chunks(): return [json.loads(l) for l in open(IN)] def embedded_keys() -> set: keys = set() if OUT.exists(): for line in open(OUT): try: keys.add(json.loads(line)["chunk_id"]) except Exception: pass return keys def embed_realtime(chunks): from google.genai import types client = get_client() done = embedded_keys() if done: log(f"resume: {len(done)} already embedded") todo = [c for c in chunks if c["chunk_id"] not in done] log(f"to embed: {len(todo)} / {len(chunks)}") n = 0 consecutive_429 = 0 with open(OUT, "a", encoding="utf-8") as fout: for b in range(0, len(todo), RT_BATCH): batch = todo[b:b + RT_BATCH] # genai 2.10: a list[str] is treated as ONE content -> 1 embedding. # Wrap each text in a Content object to get one embedding per input. contents = [types.Content(parts=[types.Part(text=c["text_with_prefix"])]) for c in batch] ok = False for attempt in range(6): try: if attempt > 0: client = get_client() r = client.models.embed_content( model=MODEL, contents=contents, config=types.EmbedContentConfig( task_type=TASK, output_dimensionality=DIM)) if len(r.embeddings) != len(batch): raise RuntimeError( f"embedding count mismatch {len(r.embeddings)}!={len(batch)}") for c, e in zip(batch, r.embeddings): c["embedding"] = l2(e.values) fout.write(json.dumps(c, ensure_ascii=False) + "\n") n += 1 fout.flush() ok = True consecutive_429 = 0 break except Exception as e: es = str(e) if "IP address restriction" in es: raise SystemExit( "BLOCKED: Gemini key IP restriction. Whitelist this host's IP.") if any(k in es for k in ("429", "RESOURCE_EXHAUSTED", "Quota exceeded")): wait = 35 elif "client has been closed" in es: wait = 2 else: wait = min(8 * (2 ** attempt), 60) log(f" retry {attempt+1}/6 in {wait}s: {repr(e)[:120]}") time.sleep(wait) if not ok: consecutive_429 += 1 log(f" FATAL skip batch of {len(batch)}") if consecutive_429 >= 3: log("SUSTAINED 429 — realtime quota exhausted.") log("Fall back to batch: python embed_reports.py --mode batch ; " "then: python embed_reports.py --mode poll") sys.exit(2) if n and n % 400 == 0: log(f" [{n}/{len(todo)}]") time.sleep(RT_SLEEP) finalize(chunks) log(f"DONE realtime: {n} newly embedded -> {OUT}") # ── batch fallback (mirrors marine_rag/embed.py) ───────────────────────────── def prepare_batch(chunks): done = embedded_keys() todo = [c for c in chunks if c["chunk_id"] not in done] with open(BATCH_INPUT, "w", encoding="utf-8") as f: for c in todo: f.write(json.dumps({ "key": c["chunk_id"], "request": { "content": {"parts": [{"text": c["text_with_prefix"]}]}, "task_type": TASK, "output_dimensionality": DIM, }}, ensure_ascii=False) + "\n") log(f"batch input: {BATCH_INPUT} ({len(todo)} reqs)") return todo def submit_batch(chunks): prepare_batch(chunks) client = get_client() up = client.files.upload(file=str(BATCH_INPUT), config={"display_name": "eqc_qa_embed", "mime_type": "jsonl"}) job = client.batches.create_embeddings( model=MODEL, src={"file_name": up.name}, config={"display_name": "eqc_qa_embeddings"}) JOB_FILE.write_text(job.name) log(f"job: {job.name} state: {job.state} (saved {JOB_FILE})") def _extract_values(resp: dict): for path in (("response", "embeddings"), ("response", "embedding"), ("embeddings",), ("embedding",)): node = resp; ok = True for k in path: if isinstance(node, dict) and k in node: node = node[k] else: ok = False; break if not ok: continue if isinstance(node, list) and node and isinstance(node[0], dict) and "values" in node[0]: return node[0]["values"] if isinstance(node, dict) and "values" in node: return node["values"] return None def poll_batch(chunks, wait=True): client = get_client() name = JOB_FILE.read_text().strip() while True: job = client.batches.get(name=name) state = str(job.state) log(f" job {name}: {state}") if any(s in state for s in ("SUCCEEDED", "FAILED", "CANCELLED", "EXPIRED")): break if not wait: return time.sleep(30) if "SUCCEEDED" not in state: log(f"job not successful: {state}"); return by_key = {c["chunk_id"]: c for c in chunks} dest = getattr(job, "dest", None) fn = getattr(dest, "file_name", None) if dest else None lines = [] if fn: lines = client.files.download(file=fn).decode("utf-8").strip().split("\n") elif dest and getattr(dest, "inlined_responses", None): lines = [json.dumps(r) for r in dest.inlined_responses] n = 0 with open(OUT, "a", encoding="utf-8") as fout: for line in lines: if not line.strip(): continue r = json.loads(line) k = r.get("key") or r.get("custom_id") vals = _extract_values(r) if k in by_key and vals: c = dict(by_key[k]); c["embedding"] = l2(vals) fout.write(json.dumps(c, ensure_ascii=False) + "\n"); n += 1 log(f"downloaded {n} embeddings -> {OUT}") finalize(chunks) def finalize(chunks): got = embedded_keys() frac = len(got) / max(1, len(chunks)) log(f"coverage: {len(got)}/{len(chunks)} = {frac:.1%}") if frac >= 0.99: SENTINEL.write_text(f"{len(got)}/{len(chunks)}\n") log(f"SENTINEL {SENTINEL} written") def main(): ap = argparse.ArgumentParser() ap.add_argument("--mode", choices=["realtime", "batch", "poll"], default="realtime") a = ap.parse_args() chunks = load_chunks() toks = sum(c["token_count"] for c in chunks) log(f"chunks={len(chunks):,} tokens={toks:,} est ${toks/1e6*0.25:.2f}") if a.mode == "realtime": embed_realtime(chunks) elif a.mode == "batch": submit_batch(chunks) elif a.mode == "poll": poll_batch(chunks, wait=True) if __name__ == "__main__": main()