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@@ -135,3 +135,55 @@ configs:
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  - split: test
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  path: uspto-mol-m-54k/test-*
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  ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  - split: test
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  path: uspto-mol-m-54k/test-*
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  ---
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+
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+ # MarkushGrapher 2 Datasets
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+
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+ Datasets for training and evaluating **MarkushGrapher 2**, a model for converting patent Markush structure images into CXSMILES representations.
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+
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+ ## Dataset Subsets
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+
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+ | Subset | Train | Test | Description | OCR |
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+ |---|---|---|---|---|
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+ | `uspto-mol-m-54k-new` | 54,785 | 200 | USPTO-MOL-M Markush samples | ChemicalOCR predictions |
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+ | `uspto-markush` | — | 74 | USPTO Markush structures benchmark | Ground Truth OCR |
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+ | `m2s` | — | 103 | Mol2Smiles (M2S) benchmark | Ground Truth OCR |
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+ | `IP5-markush` | — | 878 | IP5 Markush structures benchmark | Ground Truth OCR |
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+
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+ ## Features
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+
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+ Each sample contains:
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+
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+ - **`page_image`** — Input patent image (PIL Image, typically 1024×1024)
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+ - **`cells`** — OCR-detected text cells with bounding boxes (`bbox` in normalized coordinates, `text`)
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+ - **`cxsmiles`** — Ground truth CXSMILES representation
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+ - **`cxsmiles_opt`** — Optimized (tokenizer-friendly) CXSMILES representation
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+ - **`cxsmiles_dataset`** — Original CXSMILES from the source dataset
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+ - **`annotation`** — Annotation metadata (used to train model)
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+ - **`image_name`** — Source image filename
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+ - **`id`** — Sample identifier
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+
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+ ## Usage
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+
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+ ```python
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+ from datasets import load_dataset
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+
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+ # Load a specific subset
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+ dataset = load_dataset("docling-project/MarkushGrapher-2-Datasets", "uspto-mol-m-54k-new")
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+
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+ # Load a benchmark subset
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+ benchmark = load_dataset("docling-project/MarkushGrapher-2-Datasets", "m2s")
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+ ```
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+
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+ ## Citation
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+
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+ If you use this dataset, please cite:
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+
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+ ```bibtex
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+ @inproceedings{strohmeyer2026markushgrapher2,
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+ title={MarkushGrapher 2: End-to-End Markush Structure Parsing from Patent Images},
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+ title = {MarkushGrapher-2: End-to-end Multimodal Recognition of Chemical Structures},
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+ author = {Strohmeyer, Tim and Morin, Lucas and Meijer, Gerhard Ingmar and Weber, Valery and Nassar, Ahmed and Staar, Peter W. J.},
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+ booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)},
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+ year = {2026}
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+ }
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+ ```