from pathlib import Path import io import json import shutil import sqlite3 import time import numpy as np from . import codec from .core import canonical, dataset_name, json_write, sha256_file from .dataset import open_dataset def verify_all(root,output=None,dataset='all',samples=16,allow_development=False): root=Path(root).resolve();output=Path(output or root/'processed_data/v1') names=['prithvi','lstsr_tb'] if dataset=='all' else [dataset_name(dataset)] report={} for name in names: directory=output/name bundle=json.loads((directory/'bundle.json').read_text(encoding='utf-8')) checked={};started=time.perf_counter() for key,entry in bundle['samples'].items(): split,mod=key.split('/') ds=open_dataset(name,mod,split,root=root,prepared=output,allow_development=allow_development) indices=np.unique(np.linspace(0,len(ds)-1,min(samples,len(ds)),dtype=int)) for index in indices: item=ds[int(index)] image=item['image'];mask=item['reference_mask'] assert image.shape==((6,256,256) if mod=='hls' else (1,256,256)) assert image.dtype==np.float32 and mask.dtype==bool assert np.isfinite(image).all() and np.array_equal(image,item['target']) assert not np.shares_memory(image,item['target']) assert (image[~np.broadcast_to(mask,image.shape)]==0).all() _,_,slot,_,row=ds._record(int(index));loc=json.loads(row[3]) if name=='prithvi': parts=ds._parts(loc,row[4]) raw=np.load(io.BytesIO(parts[0 if mod=='hls' else 2]),allow_pickle=False) f=np.load(io.BytesIO(parts[1]),allow_pickle=False) if mod=='hls' else None reference,rmask=canonical(raw,mod,name,fmask=f) original=ds.source/loc['path'] if original.exists(): for base,payload in zip(codec.FILENAMES,parts): if (original/base).read_bytes()!=payload:raise ValueError('Original/packed byte mismatch') elif mod=='hls': raw,f,v=ds._npz(loc);reference,rmask=canonical(raw,mod,name,fmask=f,source_valid=v) else: raw,v=ds._npz(loc);reference,rmask=canonical(raw[slot],mod,name,source_valid=v[slot]) assert np.array_equal(mask,rmask) valid=np.broadcast_to(mask,reference.shape) tolerance=2e-6 if mod=='hls' else 0.005 if not np.allclose(ds.denormalize(image)[valid],reference[valid],rtol=0,atol=tolerance): raise ValueError('Normalization round trip failed') checked[key]={'samples':len(ds),'checked':len(indices),'roundtrip_passed':True} ds.close() report[name]={'status':'passed','scope':bundle['scope'],'profiles':checked, 'all_compressed_records_verified_during_preparation':bundle['all_packed_records_byte_verified'], 'seconds':time.perf_counter()-started} json_write(directory/'verification.json',report[name]) return report def restore_prithvi(root,prepared,destination,limit=None): root=Path(root).resolve();directory=Path(prepared or root/'processed_data/v1')/'prithvi' destination=Path(destination).resolve() if destination.exists() and any(destination.iterdir()): raise ValueError('Restore destination must be absent or empty') destination.mkdir(parents=True,exist_ok=True) bundle=json.loads((directory/'bundle.json').read_text(encoding='utf-8')) reader=open_dataset('prithvi','hls',root=root,prepared=directory.parent,allow_development=True) db=reader._connect() n=0 for key,loc_text,digest in db.execute('SELECT key,loc,digest FROM records ORDER BY id'): loc=json.loads(loc_text) parts=reader._parts(loc,digest) folder=(destination/key).resolve() if not folder.is_relative_to(destination):raise ValueError('Unsafe restored path') folder.mkdir(parents=True,exist_ok=True) for base,payload in zip(codec.FILENAMES,parts):(folder/base).write_bytes(payload) n+=1 if limit and n>=limit:break reader.close() for rel,info in bundle['auxiliary'].items(): src=directory/'original_aux'/rel;dst=(destination/rel).resolve() if not dst.is_relative_to(destination):raise ValueError('Unsafe auxiliary path') if sha256_file(src)!=info['sha256']:raise ValueError('Auxiliary hash mismatch') dst.parent.mkdir(parents=True,exist_ok=True);shutil.copy2(src,dst) return {'restored_records':n,'full_dataset':n==bundle['records'],'destination':str(destination)}