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milk10k_effb2_metadata/MILK10K_EFFB2_METADATA_CLI.md CHANGED
@@ -86,7 +86,7 @@ python train_milk10k_effb2_dual_metadata.py \
86
  --output-dir milk10k_effb2_focal_sampler_p05
87
  ```
88
 
89
- ## 6. MILK Long-Tail Loss
90
 
91
  Recommended first run:
92
 
@@ -94,10 +94,10 @@ Recommended first run:
94
  python train_milk10k_effb2_dual_metadata.py \
95
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
96
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
97
- --loss milk_lt \
98
  --weighted-sampler \
99
  --sampler-power 0.5 \
100
- --output-dir milk10k_effb2_milk_lt_sampler_p05
101
  ```
102
 
103
  Without sampler:
@@ -106,25 +106,25 @@ Without sampler:
106
  python train_milk10k_effb2_dual_metadata.py \
107
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
108
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
109
- --loss milk_lt \
110
- --output-dir milk10k_effb2_milk_lt
111
  ```
112
 
113
- More conservative prior correction:
114
 
115
  ```bash
116
  python train_milk10k_effb2_dual_metadata.py \
117
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
118
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
119
- --loss milk_lt \
120
- --lt-logit-tau 0.5 \
121
- --lt-max-margin 0.3 \
122
  --weighted-sampler \
123
  --sampler-power 0.5 \
124
- --output-dir milk10k_effb2_milk_lt_conservative
125
  ```
126
 
127
- Note: do not add `--class-weight` with `--loss milk_lt`; `milk_lt` already uses effective-number alpha.
128
 
129
  ## 7. K-Fold
130
 
@@ -134,17 +134,17 @@ Note: do not add `--class-weight` with `--loss milk_lt`; `milk_lt` already uses
134
  python train_milk10k_effb2_dual_metadata.py \
135
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
136
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
137
- --loss milk_lt \
138
  --weighted-sampler \
139
  --sampler-power 0.5 \
140
  --k-folds 5 \
141
- --output-dir milk10k_effb2_milk_lt_kfold5
142
  ```
143
 
144
  Outputs:
145
 
146
  ```text
147
- milk10k_effb2_milk_lt_kfold5/
148
  fold_00/
149
  fold_01/
150
  fold_02/
@@ -174,11 +174,11 @@ Example with AMP:
174
  python train_milk10k_effb2_dual_metadata.py \
175
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
176
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
177
- --loss milk_lt \
178
  --weighted-sampler \
179
  --sampler-power 0.5 \
180
  --amp \
181
- --output-dir milk10k_effb2_milk_lt_amp
182
  ```
183
 
184
  ## 9. Smoke Checks
@@ -197,7 +197,7 @@ python train_milk10k_effb2_dual_metadata.py \
197
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
198
  --freeze-epochs 0 \
199
  --finetune-epochs 0 \
200
- --loss milk_lt \
201
  --output-dir /tmp/milk10k_effb2_smoke_single
202
  ```
203
 
@@ -209,7 +209,7 @@ python train_milk10k_effb2_dual_metadata.py \
209
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
210
  --freeze-epochs 0 \
211
  --finetune-epochs 0 \
212
- --loss milk_lt \
213
  --k-folds 2 \
214
  --output-dir /tmp/milk10k_effb2_smoke_kfold
215
  ```
@@ -243,7 +243,7 @@ Use the saved checkpoint directly. You do not need to pass the original branch c
243
 
244
  ```bash
245
  python predict_milk10k_effb2_dual_metadata.py \
246
- --checkpoint milk10k_effb2_milk_lt_sampler_p05/best.pt \
247
  --data-dir /marimo/milk10k \
248
  --output milk10k_effb2_test_predictions.csv \
249
  --batch-size 16 \
@@ -261,7 +261,7 @@ For an unlabeled test set, pass image root and metadata CSV explicitly:
261
 
262
  ```bash
263
  python predict_milk10k_effb2_dual_metadata.py \
264
- --checkpoint milk10k_effb2_milk_lt_sampler_p05/best.pt \
265
  --input-dir /path/to/MILK10k_Test_Input \
266
  --metadata-csv /path/to/MILK10k_Test_Metadata.csv \
267
  --output milk10k_effb2_test_predictions.csv \
 
86
  --output-dir milk10k_effb2_focal_sampler_p05
87
  ```
88
 
89
+ ## 6. LDAM + DRW Loss
90
 
91
  Recommended first run:
92
 
 
94
  python train_milk10k_effb2_dual_metadata.py \
95
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
96
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
97
+ --loss ldam \
98
  --weighted-sampler \
99
  --sampler-power 0.5 \
100
+ --output-dir milk10k_effb2_ldam_sampler_p05
101
  ```
102
 
103
  Without sampler:
 
106
  python train_milk10k_effb2_dual_metadata.py \
107
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
108
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
109
+ --loss ldam \
110
+ --output-dir milk10k_effb2_ldam
111
  ```
112
 
113
+ More conservative LDAM margin with delayed DRW:
114
 
115
  ```bash
116
  python train_milk10k_effb2_dual_metadata.py \
117
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
118
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
119
+ --loss ldam \
120
+ --ldam-max-margin 0.3 \
121
+ --ldam-drw-start-epoch 8 \
122
  --weighted-sampler \
123
  --sampler-power 0.5 \
124
+ --output-dir milk10k_effb2_ldam_conservative
125
  ```
126
 
127
+ Note: do not add `--class-weight` with `--loss ldam`; LDAM+DRW already uses effective-number alpha.
128
 
129
  ## 7. K-Fold
130
 
 
134
  python train_milk10k_effb2_dual_metadata.py \
135
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
136
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
137
+ --loss ldam \
138
  --weighted-sampler \
139
  --sampler-power 0.5 \
140
  --k-folds 5 \
141
+ --output-dir milk10k_effb2_ldam_kfold5
142
  ```
143
 
144
  Outputs:
145
 
146
  ```text
147
+ milk10k_effb2_ldam_kfold5/
148
  fold_00/
149
  fold_01/
150
  fold_02/
 
174
  python train_milk10k_effb2_dual_metadata.py \
175
  --clinical-checkpoint best_effnetb2_ufes_clinical.pth \
176
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
177
+ --loss ldam \
178
  --weighted-sampler \
179
  --sampler-power 0.5 \
180
  --amp \
181
+ --output-dir milk10k_effb2_ldam_amp
182
  ```
183
 
184
  ## 9. Smoke Checks
 
197
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
198
  --freeze-epochs 0 \
199
  --finetune-epochs 0 \
200
+ --loss ldam \
201
  --output-dir /tmp/milk10k_effb2_smoke_single
202
  ```
203
 
 
209
  --dermoscopic-checkpoint efficientnet_b2_best_dermoscopic.pt \
210
  --freeze-epochs 0 \
211
  --finetune-epochs 0 \
212
+ --loss ldam \
213
  --k-folds 2 \
214
  --output-dir /tmp/milk10k_effb2_smoke_kfold
215
  ```
 
243
 
244
  ```bash
245
  python predict_milk10k_effb2_dual_metadata.py \
246
+ --checkpoint milk10k_effb2_ldam_sampler_p05/best.pt \
247
  --data-dir /marimo/milk10k \
248
  --output milk10k_effb2_test_predictions.csv \
249
  --batch-size 16 \
 
261
 
262
  ```bash
263
  python predict_milk10k_effb2_dual_metadata.py \
264
+ --checkpoint milk10k_effb2_ldam_sampler_p05/best.pt \
265
  --input-dir /path/to/MILK10k_Test_Input \
266
  --metadata-csv /path/to/MILK10k_Test_Metadata.csv \
267
  --output milk10k_effb2_test_predictions.csv \
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milk10k_effb2_metadata/cli.py CHANGED
@@ -76,13 +76,12 @@ def parse_args() -> argparse.Namespace:
76
  parser.add_argument("--class-weight", action="store_true")
77
  parser.add_argument("--weighted-sampler", action="store_true")
78
  parser.add_argument("--sampler-power", type=float, default=1.0)
79
- parser.add_argument("--loss", choices=["ce", "focal", "milk_lt"], default="ce")
80
  parser.add_argument("--focal-gamma", type=float, default=2.0)
81
- parser.add_argument("--lt-beta", type=float, default=0.9999)
82
- parser.add_argument("--lt-max-margin", type=float, default=0.5)
83
- parser.add_argument("--lt-logit-tau", type=float, default=1.0)
84
- parser.add_argument("--lt-draw-start-epoch", "--lt-drw-start-epoch", dest="lt_draw_start_epoch", type=int, default=0)
85
- parser.add_argument("--lt-alpha-max", type=float, default=10.0)
86
  parser.add_argument("--k-folds", type=int, default=1)
87
  parser.add_argument("--amp", action="store_true")
88
  parser.add_argument(
 
76
  parser.add_argument("--class-weight", action="store_true")
77
  parser.add_argument("--weighted-sampler", action="store_true")
78
  parser.add_argument("--sampler-power", type=float, default=1.0)
79
+ parser.add_argument("--loss", choices=["ce", "focal", "ldam"], default="ce")
80
  parser.add_argument("--focal-gamma", type=float, default=2.0)
81
+ parser.add_argument("--ldam-beta", type=float, default=0.9999)
82
+ parser.add_argument("--ldam-max-margin", type=float, default=0.5)
83
+ parser.add_argument("--ldam-drw-start-epoch", type=int, default=0)
84
+ parser.add_argument("--ldam-alpha-max", type=float, default=10.0)
 
85
  parser.add_argument("--k-folds", type=int, default=1)
86
  parser.add_argument("--amp", action="store_true")
87
  parser.add_argument(
milk10k_effb2_metadata/losses.py CHANGED
@@ -27,15 +27,14 @@ class FocalLoss(nn.Module):
27
  return loss.mean()
28
 
29
 
30
- class MILKLongTailLoss(nn.Module):
31
- """LDAM + balanced-softmax/logit adjustment + deferred effective-number alpha."""
32
 
33
  def __init__(
34
  self,
35
  class_counts: torch.Tensor,
36
  beta: float = 0.9999,
37
  max_margin: float = 0.5,
38
- logit_tau: float = 1.0,
39
  deferred_start_epoch: int = 0,
40
  alpha_max: float = 10.0,
41
  ) -> None:
@@ -43,15 +42,12 @@ class MILKLongTailLoss(nn.Module):
43
  counts = class_counts.float().clamp_min(1.0)
44
  margins = 1.0 / torch.sqrt(torch.sqrt(counts))
45
  margins = margins * (max_margin / margins.max().clamp_min(1e-12))
46
- priors = counts / counts.sum()
47
  alpha = effective_number_alpha(counts, beta)
48
  alpha = alpha.clamp(max=alpha_max)
49
  alpha = alpha * (counts.numel() / alpha.sum().clamp_min(1e-12))
50
 
51
  self.register_buffer("margins", margins)
52
- self.register_buffer("log_priors", priors.log())
53
  self.register_buffer("alpha", alpha)
54
- self.logit_tau = logit_tau
55
  self.deferred_start_epoch = deferred_start_epoch
56
  self.current_epoch = 0
57
 
@@ -60,12 +56,10 @@ class MILKLongTailLoss(nn.Module):
60
 
61
  def forward(self, logits: torch.Tensor, labels: torch.Tensor) -> torch.Tensor:
62
  margins = self.margins.to(device=logits.device, dtype=logits.dtype)
63
- log_priors = self.log_priors.to(device=logits.device, dtype=logits.dtype)
64
  alpha = self.alpha.to(device=logits.device, dtype=logits.dtype)
65
  adjusted_logits = logits.clone()
66
  rows = torch.arange(labels.size(0), device=labels.device)
67
  adjusted_logits[rows, labels] = adjusted_logits[rows, labels] - margins[labels]
68
- adjusted_logits = adjusted_logits + self.logit_tau * log_priors
69
  loss = F.cross_entropy(adjusted_logits, labels, reduction="none")
70
  if self.current_epoch >= self.deferred_start_epoch:
71
  loss = loss * alpha[labels]
@@ -76,7 +70,7 @@ def effective_number_alpha(counts: torch.Tensor, beta: float) -> torch.Tensor:
76
  if beta <= 0.0:
77
  return torch.ones_like(counts)
78
  if beta >= 1.0:
79
- raise ValueError("--lt-beta must be less than 1.0")
80
  beta_tensor = torch.tensor(beta, dtype=counts.dtype, device=counts.device)
81
  effective_num = 1.0 - torch.pow(beta_tensor, counts)
82
  alpha = (1.0 - beta_tensor) / effective_num.clamp_min(1e-12)
@@ -93,15 +87,14 @@ def class_count_tensor(train_df: pd.DataFrame, label_to_idx: dict[str, int], dev
93
 
94
 
95
  def build_loss(train_df: pd.DataFrame, label_to_idx: dict[str, int], args: argparse.Namespace, device: torch.device) -> nn.Module:
96
- if args.loss == "milk_lt":
97
  counts = class_count_tensor(train_df, label_to_idx, device)
98
- return MILKLongTailLoss(
99
  class_counts=counts,
100
- beta=args.lt_beta,
101
- max_margin=args.lt_max_margin,
102
- logit_tau=args.lt_logit_tau,
103
- deferred_start_epoch=args.lt_draw_start_epoch,
104
- alpha_max=args.lt_alpha_max,
105
  )
106
 
107
  weight = None
 
27
  return loss.mean()
28
 
29
 
30
+ class LDAMLoss(nn.Module):
31
+ """LDAM with deferred effective-number reweighting."""
32
 
33
  def __init__(
34
  self,
35
  class_counts: torch.Tensor,
36
  beta: float = 0.9999,
37
  max_margin: float = 0.5,
 
38
  deferred_start_epoch: int = 0,
39
  alpha_max: float = 10.0,
40
  ) -> None:
 
42
  counts = class_counts.float().clamp_min(1.0)
43
  margins = 1.0 / torch.sqrt(torch.sqrt(counts))
44
  margins = margins * (max_margin / margins.max().clamp_min(1e-12))
 
45
  alpha = effective_number_alpha(counts, beta)
46
  alpha = alpha.clamp(max=alpha_max)
47
  alpha = alpha * (counts.numel() / alpha.sum().clamp_min(1e-12))
48
 
49
  self.register_buffer("margins", margins)
 
50
  self.register_buffer("alpha", alpha)
 
51
  self.deferred_start_epoch = deferred_start_epoch
52
  self.current_epoch = 0
53
 
 
56
 
57
  def forward(self, logits: torch.Tensor, labels: torch.Tensor) -> torch.Tensor:
58
  margins = self.margins.to(device=logits.device, dtype=logits.dtype)
 
59
  alpha = self.alpha.to(device=logits.device, dtype=logits.dtype)
60
  adjusted_logits = logits.clone()
61
  rows = torch.arange(labels.size(0), device=labels.device)
62
  adjusted_logits[rows, labels] = adjusted_logits[rows, labels] - margins[labels]
 
63
  loss = F.cross_entropy(adjusted_logits, labels, reduction="none")
64
  if self.current_epoch >= self.deferred_start_epoch:
65
  loss = loss * alpha[labels]
 
70
  if beta <= 0.0:
71
  return torch.ones_like(counts)
72
  if beta >= 1.0:
73
+ raise ValueError("--ldam-beta must be less than 1.0")
74
  beta_tensor = torch.tensor(beta, dtype=counts.dtype, device=counts.device)
75
  effective_num = 1.0 - torch.pow(beta_tensor, counts)
76
  alpha = (1.0 - beta_tensor) / effective_num.clamp_min(1e-12)
 
87
 
88
 
89
  def build_loss(train_df: pd.DataFrame, label_to_idx: dict[str, int], args: argparse.Namespace, device: torch.device) -> nn.Module:
90
+ if args.loss == "ldam":
91
  counts = class_count_tensor(train_df, label_to_idx, device)
92
+ return LDAMLoss(
93
  class_counts=counts,
94
+ beta=args.ldam_beta,
95
+ max_margin=args.ldam_max_margin,
96
+ deferred_start_epoch=args.ldam_drw_start_epoch,
97
+ alpha_max=args.ldam_alpha_max,
 
98
  )
99
 
100
  weight = None
milk10k_effb2_metadata/training.py CHANGED
@@ -416,8 +416,8 @@ def run_training_split(
416
  f"freeze_metadata_head={args.freeze_metadata_head}, metadata_lr={args.metadata_lr}"
417
  )
418
  print(f"Loss: {args.loss}, class_weight={args.class_weight}, weighted_sampler={args.weighted_sampler}")
419
- if args.loss == "milk_lt" and args.class_weight:
420
- print("Note: --class-weight is ignored for --loss milk_lt because milk_lt uses effective-number alpha.")
421
 
422
  history: list[dict[str, Any]] = []
423
  history_path = output_dir / "history.csv"
 
416
  f"freeze_metadata_head={args.freeze_metadata_head}, metadata_lr={args.metadata_lr}"
417
  )
418
  print(f"Loss: {args.loss}, class_weight={args.class_weight}, weighted_sampler={args.weighted_sampler}")
419
+ if args.loss == "ldam" and args.class_weight:
420
+ print("Note: --class-weight is ignored for --loss ldam because LDAM+DRW uses effective-number alpha.")
421
 
422
  history: list[dict[str, Any]] = []
423
  history_path = output_dir / "history.csv"