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milk10k_effb2_metadata/cli.py CHANGED
@@ -94,6 +94,12 @@ def parse_args() -> argparse.Namespace:
94
  parser.add_argument("--ldam-max-margin", type=float, default=0.5)
95
  parser.add_argument("--ldam-drw-start-epoch", type=int, default=0)
96
  parser.add_argument("--ldam-alpha-max", type=float, default=10.0)
 
 
 
 
 
 
97
  parser.add_argument("--k-folds", type=int, default=1)
98
  parser.add_argument("--amp", action="store_true")
99
  parser.add_argument(
 
94
  parser.add_argument("--ldam-max-margin", type=float, default=0.5)
95
  parser.add_argument("--ldam-drw-start-epoch", type=int, default=0)
96
  parser.add_argument("--ldam-alpha-max", type=float, default=10.0)
97
+ parser.add_argument(
98
+ "--tail-num-classes",
99
+ type=int,
100
+ default=4,
101
+ help="Number of lowest-support train classes to track for LDAM tail_best.pt.",
102
+ )
103
  parser.add_argument("--k-folds", type=int, default=1)
104
  parser.add_argument("--amp", action="store_true")
105
  parser.add_argument(
milk10k_effb2_metadata/engine.py CHANGED
@@ -29,6 +29,7 @@ def run_epoch(
29
  optimizer: torch.optim.Optimizer | None = None,
30
  scaler: GradScaler | None = None,
31
  use_amp: bool = False,
 
32
  ) -> dict[str, float]:
33
  training = optimizer is not None
34
  model.train(training)
@@ -72,13 +73,23 @@ def run_epoch(
72
  y_pred = np.concatenate(preds_all) if preds_all else np.array([])
73
  y_true = np.concatenate(labels_all) if labels_all else np.array([])
74
 
75
- return {
76
  "loss": total_loss / max(total, 1),
77
  "accuracy": correct / max(total, 1),
78
  "balanced_accuracy": float(balanced_accuracy_score(y_true, y_pred)) if total else 0.0,
79
  "f1_macro": float(precision_recall_fscore_support(y_true, y_pred, average="macro", zero_division=0)[2]) if total else 0.0,
80
  "top3_accuracy": top3_correct / max(total, 1),
81
  }
 
 
 
 
 
 
 
 
 
 
82
 
83
 
84
  def save_checkpoint(
@@ -92,21 +103,22 @@ def save_checkpoint(
92
  label_to_idx: dict[str, int],
93
  metadata_spec: dict[str, Any],
94
  args: argparse.Namespace,
 
95
  ) -> None:
96
- torch.save(
97
- {
98
- "epoch": epoch,
99
- "phase": phase,
100
- "model_state": model.state_dict(),
101
- "optimizer_state": optimizer.state_dict(),
102
- "best_val_f1_macro": best_val_f1,
103
- "class_names": class_names,
104
- "label_to_idx": label_to_idx,
105
- "metadata_spec": metadata_spec,
106
- "args": json_safe(vars(args)),
107
- },
108
- path,
109
- )
110
 
111
 
112
  def train_phase(
@@ -126,9 +138,13 @@ def train_phase(
126
  history: list[dict[str, Any]],
127
  best_val_f1: float,
128
  skip_until_epoch: int = 1,
129
- ) -> tuple[int, float]:
 
 
 
 
130
  if num_epochs <= 0:
131
- return start_epoch, best_val_f1
132
 
133
  encoders_trainable = phase == "finetune"
134
  set_encoder_trainable(model, encoders_trainable)
@@ -146,8 +162,8 @@ def train_phase(
146
  continue
147
  if hasattr(criterion, "set_epoch"):
148
  criterion.set_epoch(epoch)
149
- train_stats = run_epoch(model, train_loader, criterion, device, optimizer, scaler, use_amp)
150
- val_stats = run_epoch(model, val_loader, criterion, device)
151
  scheduler.step(val_stats["f1_macro"])
152
  row = {
153
  "phase": phase,
@@ -164,6 +180,12 @@ def train_phase(
164
  f"val_acc={val_stats['accuracy']:.4f} val_bal_acc={val_stats['balanced_accuracy']:.4f} "
165
  f"val_f1={val_stats['f1_macro']:.4f} val_top3={val_stats['top3_accuracy']:.4f}"
166
  )
 
 
 
 
 
 
167
 
168
  if val_stats["f1_macro"] > best_val_f1:
169
  best_val_f1 = val_stats["f1_macro"]
@@ -186,8 +208,35 @@ def train_phase(
186
  )
187
  else:
188
  patience_count += 1
189
- if patience_count >= args.patience:
190
- print(f"Early stopping {phase} at epoch {epoch}")
191
- break
192
 
193
- return epoch + 1, best_val_f1
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
29
  optimizer: torch.optim.Optimizer | None = None,
30
  scaler: GradScaler | None = None,
31
  use_amp: bool = False,
32
+ tail_class_indices: list[int] | None = None,
33
  ) -> dict[str, float]:
34
  training = optimizer is not None
35
  model.train(training)
 
73
  y_pred = np.concatenate(preds_all) if preds_all else np.array([])
74
  y_true = np.concatenate(labels_all) if labels_all else np.array([])
75
 
76
+ stats = {
77
  "loss": total_loss / max(total, 1),
78
  "accuracy": correct / max(total, 1),
79
  "balanced_accuracy": float(balanced_accuracy_score(y_true, y_pred)) if total else 0.0,
80
  "f1_macro": float(precision_recall_fscore_support(y_true, y_pred, average="macro", zero_division=0)[2]) if total else 0.0,
81
  "top3_accuracy": top3_correct / max(total, 1),
82
  }
83
+ if tail_class_indices:
84
+ recalls = precision_recall_fscore_support(
85
+ y_true,
86
+ y_pred,
87
+ labels=tail_class_indices,
88
+ average=None,
89
+ zero_division=0,
90
+ )[1]
91
+ stats["tail_recall_macro"] = float(np.mean(recalls)) if len(recalls) else 0.0
92
+ return stats
93
 
94
 
95
  def save_checkpoint(
 
103
  label_to_idx: dict[str, int],
104
  metadata_spec: dict[str, Any],
105
  args: argparse.Namespace,
106
+ extra: dict[str, Any] | None = None,
107
  ) -> None:
108
+ payload = {
109
+ "epoch": epoch,
110
+ "phase": phase,
111
+ "model_state": model.state_dict(),
112
+ "optimizer_state": optimizer.state_dict(),
113
+ "best_val_f1_macro": best_val_f1,
114
+ "class_names": class_names,
115
+ "label_to_idx": label_to_idx,
116
+ "metadata_spec": metadata_spec,
117
+ "args": json_safe(vars(args)),
118
+ }
119
+ if extra:
120
+ payload.update(json_safe(extra))
121
+ torch.save(payload, path)
122
 
123
 
124
  def train_phase(
 
138
  history: list[dict[str, Any]],
139
  best_val_f1: float,
140
  skip_until_epoch: int = 1,
141
+ tail_class_indices: list[int] | None = None,
142
+ tail_class_names: list[str] | None = None,
143
+ train_class_counts: dict[str, int] | None = None,
144
+ best_val_tail_recall: float = float("-inf"),
145
+ ) -> tuple[int, float, float]:
146
  if num_epochs <= 0:
147
+ return start_epoch, best_val_f1, best_val_tail_recall
148
 
149
  encoders_trainable = phase == "finetune"
150
  set_encoder_trainable(model, encoders_trainable)
 
162
  continue
163
  if hasattr(criterion, "set_epoch"):
164
  criterion.set_epoch(epoch)
165
+ train_stats = run_epoch(model, train_loader, criterion, device, optimizer, scaler, use_amp, tail_class_indices)
166
+ val_stats = run_epoch(model, val_loader, criterion, device, tail_class_indices=tail_class_indices)
167
  scheduler.step(val_stats["f1_macro"])
168
  row = {
169
  "phase": phase,
 
180
  f"val_acc={val_stats['accuracy']:.4f} val_bal_acc={val_stats['balanced_accuracy']:.4f} "
181
  f"val_f1={val_stats['f1_macro']:.4f} val_top3={val_stats['top3_accuracy']:.4f}"
182
  )
183
+ if tail_class_indices:
184
+ print(
185
+ f"LDAM tail: classes={tail_class_names} "
186
+ f"train_tail_recall={train_stats['tail_recall_macro']:.4f} "
187
+ f"val_tail_recall={val_stats['tail_recall_macro']:.4f}"
188
+ )
189
 
190
  if val_stats["f1_macro"] > best_val_f1:
191
  best_val_f1 = val_stats["f1_macro"]
 
208
  )
209
  else:
210
  patience_count += 1
 
 
 
211
 
212
+ if tail_class_indices and val_stats["tail_recall_macro"] > best_val_tail_recall:
213
+ best_val_tail_recall = val_stats["tail_recall_macro"]
214
+ save_checkpoint(
215
+ output_dir / "tail_best.pt",
216
+ model,
217
+ optimizer,
218
+ epoch,
219
+ phase,
220
+ best_val_f1,
221
+ class_names,
222
+ label_to_idx,
223
+ metadata_spec,
224
+ args,
225
+ {
226
+ "best_val_tail_recall_macro": best_val_tail_recall,
227
+ "tail_class_names": tail_class_names or [],
228
+ "tail_class_indices": tail_class_indices,
229
+ "train_class_counts": train_class_counts or {},
230
+ "selection_metric": "val_tail_recall_macro",
231
+ },
232
+ )
233
+ print(
234
+ f"Saved tail checkpoint: phase={phase} epoch={epoch:03d} "
235
+ f"best_val_tail_recall_macro={best_val_tail_recall:.4f} path={output_dir / 'tail_best.pt'}"
236
+ )
237
+
238
+ if patience_count >= args.patience:
239
+ print(f"Early stopping {phase} at epoch {epoch}")
240
+ break
241
+
242
+ return epoch + 1, best_val_f1, best_val_tail_recall
milk10k_effb2_metadata/runner.py CHANGED
@@ -24,6 +24,27 @@ from milk10k_effb2_metadata.model_setup import build_model, load_resume_checkpoi
24
  from milk10k_effb2_metadata.training_utils import json_safe, save_kfold_summary, save_run_config
25
 
26
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
27
  def run_training_split(
28
  df: pd.DataFrame,
29
  train_df: pd.DataFrame,
@@ -68,6 +89,7 @@ def run_training_split(
68
  resume_epoch, resume_best_val_f1, resume_phase = load_resume_checkpoint(args.resume_checkpoint, model, device)
69
  train_loader, val_loader = make_loaders(train_df, val_df, label_to_idx, metadata_spec, args)
70
  criterion = build_loss(train_df, label_to_idx, args, device)
 
71
 
72
  print(f"Output dir: {output_dir}")
73
  print(f"Device: {device}")
@@ -83,17 +105,25 @@ def run_training_split(
83
  print(f"Loss: {args.loss}, class_weight={args.class_weight}, weighted_sampler={args.weighted_sampler}")
84
  if args.loss == "ldam" and args.class_weight:
85
  print("Note: --class-weight is ignored for --loss ldam because LDAM+DRW uses effective-number alpha.")
 
 
 
86
 
87
  history: list[dict[str, Any]] = []
88
  history_path = output_dir / "history.csv"
89
  if args.resume_checkpoint is not None and history_path.exists():
90
  history = pd.read_csv(history_path).to_dict("records")
91
  best_start = resume_best_val_f1 if args.resume_checkpoint is not None else float("-inf")
 
 
 
 
 
92
  skip_freeze_until = resume_epoch if resume_phase == "freeze" else 1
93
  if resume_phase == "finetune":
94
  skip_freeze_until = args.freeze_epochs + 1
95
  skip_finetune_until = resume_epoch if resume_phase == "finetune" else 1
96
- epoch, best_val_f1 = train_phase(
97
  "freeze",
98
  args.freeze_epochs,
99
  1,
@@ -110,8 +140,10 @@ def run_training_split(
110
  history,
111
  best_start,
112
  skip_freeze_until,
 
 
113
  )
114
- epoch, best_val_f1 = train_phase(
115
  "finetune",
116
  args.finetune_epochs,
117
  epoch,
@@ -128,6 +160,8 @@ def run_training_split(
128
  history,
129
  best_val_f1,
130
  skip_finetune_until,
 
 
131
  )
132
 
133
  best_path = output_dir / "best.pt"
@@ -137,6 +171,9 @@ def run_training_split(
137
  y_true, y_prob = predict(model, val_loader, device)
138
  metrics, per_class_df, cm = compute_metrics(y_true, y_prob, class_names)
139
  metrics = {"best_val_f1_macro": float(best_val_f1), **metrics}
 
 
 
140
  with open(output_dir / "metrics.json", "w", encoding="utf-8") as f:
141
  json.dump(json_safe(metrics), f, indent=2)
142
  pd.DataFrame(cm, index=class_names, columns=class_names).to_csv(output_dir / "confusion_matrix.csv")
 
24
  from milk10k_effb2_metadata.training_utils import json_safe, save_kfold_summary, save_run_config
25
 
26
 
27
+ def build_tail_tracking_config(
28
+ train_df: pd.DataFrame,
29
+ class_names: list[str],
30
+ label_to_idx: dict[str, int],
31
+ args: argparse.Namespace,
32
+ ) -> dict[str, Any] | None:
33
+ if args.loss != "ldam" or args.tail_num_classes <= 0:
34
+ return None
35
+
36
+ counts_series = train_df["label"].value_counts().reindex(class_names, fill_value=0)
37
+ train_class_counts = {label: int(counts_series[label]) for label in class_names}
38
+ tail_class_names = sorted(class_names, key=lambda label: (train_class_counts[label], label))[
39
+ : min(args.tail_num_classes, len(class_names))
40
+ ]
41
+ return {
42
+ "tail_class_names": tail_class_names,
43
+ "tail_class_indices": [label_to_idx[label] for label in tail_class_names],
44
+ "train_class_counts": train_class_counts,
45
+ }
46
+
47
+
48
  def run_training_split(
49
  df: pd.DataFrame,
50
  train_df: pd.DataFrame,
 
89
  resume_epoch, resume_best_val_f1, resume_phase = load_resume_checkpoint(args.resume_checkpoint, model, device)
90
  train_loader, val_loader = make_loaders(train_df, val_df, label_to_idx, metadata_spec, args)
91
  criterion = build_loss(train_df, label_to_idx, args, device)
92
+ tail_config = build_tail_tracking_config(train_df, class_names, label_to_idx, args)
93
 
94
  print(f"Output dir: {output_dir}")
95
  print(f"Device: {device}")
 
105
  print(f"Loss: {args.loss}, class_weight={args.class_weight}, weighted_sampler={args.weighted_sampler}")
106
  if args.loss == "ldam" and args.class_weight:
107
  print("Note: --class-weight is ignored for --loss ldam because LDAM+DRW uses effective-number alpha.")
108
+ if tail_config is not None:
109
+ tail_counts = {label: tail_config["train_class_counts"][label] for label in tail_config["tail_class_names"]}
110
+ print(f"LDAM tail tracking: tail_num_classes={args.tail_num_classes}, tail_counts={tail_counts}")
111
 
112
  history: list[dict[str, Any]] = []
113
  history_path = output_dir / "history.csv"
114
  if args.resume_checkpoint is not None and history_path.exists():
115
  history = pd.read_csv(history_path).to_dict("records")
116
  best_start = resume_best_val_f1 if args.resume_checkpoint is not None else float("-inf")
117
+ best_tail_start = float("-inf")
118
+ tail_best_path = output_dir / "tail_best.pt"
119
+ if args.resume_checkpoint is not None and tail_best_path.exists():
120
+ tail_checkpoint = torch.load(tail_best_path, map_location=device, weights_only=False)
121
+ best_tail_start = float(tail_checkpoint.get("best_val_tail_recall_macro", float("-inf")))
122
  skip_freeze_until = resume_epoch if resume_phase == "freeze" else 1
123
  if resume_phase == "finetune":
124
  skip_freeze_until = args.freeze_epochs + 1
125
  skip_finetune_until = resume_epoch if resume_phase == "finetune" else 1
126
+ epoch, best_val_f1, best_val_tail_recall = train_phase(
127
  "freeze",
128
  args.freeze_epochs,
129
  1,
 
140
  history,
141
  best_start,
142
  skip_freeze_until,
143
+ **(tail_config or {}),
144
+ best_val_tail_recall=best_tail_start,
145
  )
146
+ epoch, best_val_f1, best_val_tail_recall = train_phase(
147
  "finetune",
148
  args.finetune_epochs,
149
  epoch,
 
160
  history,
161
  best_val_f1,
162
  skip_finetune_until,
163
+ **(tail_config or {}),
164
+ best_val_tail_recall=best_val_tail_recall,
165
  )
166
 
167
  best_path = output_dir / "best.pt"
 
171
  y_true, y_prob = predict(model, val_loader, device)
172
  metrics, per_class_df, cm = compute_metrics(y_true, y_prob, class_names)
173
  metrics = {"best_val_f1_macro": float(best_val_f1), **metrics}
174
+ if tail_config is not None:
175
+ metrics["best_val_tail_recall_macro"] = float(best_val_tail_recall)
176
+ metrics["tail_class_names"] = tail_config["tail_class_names"]
177
  with open(output_dir / "metrics.json", "w", encoding="utf-8") as f:
178
  json.dump(json_safe(metrics), f, indent=2)
179
  pd.DataFrame(cm, index=class_names, columns=class_names).to_csv(output_dir / "confusion_matrix.csv")
milk10k_effb2_metadata/training_utils.py CHANGED
@@ -46,6 +46,7 @@ def save_kfold_summary(fold_metrics: list[dict[str, Any]], output_dir: Path) ->
46
 
47
  summary_keys = [
48
  "best_val_f1_macro",
 
49
  "accuracy",
50
  "balanced_accuracy",
51
  "f1_macro",
 
46
 
47
  summary_keys = [
48
  "best_val_f1_macro",
49
+ "best_val_tail_recall_macro",
50
  "accuracy",
51
  "balanced_accuracy",
52
  "f1_macro",