"""Model components for the dual EfficientNet-B2 metadata classifier.""" from __future__ import annotations import timm import torch import torch.nn.functional as F from torch import nn ONE_ENCODER_IMAGE_FUSIONS = ("single_encoder_canvas", "shared_encoder_pool") def is_one_encoder_image_fusion(image_fusion: str) -> bool: return image_fusion in ONE_ENCODER_IMAGE_FUSIONS class ProjectionHead(nn.Module): def __init__(self, in_dim: int, out_dim: int, dropout: float) -> None: super().__init__() self.net = nn.Sequential( nn.LayerNorm(in_dim), nn.Dropout(dropout), nn.Linear(in_dim, out_dim), nn.GELU(), nn.LayerNorm(out_dim), ) def forward(self, x: torch.Tensor) -> torch.Tensor: return self.net(x) class BranchClassifier(nn.Module): def __init__(self, in_dim: int, num_classes: int, dropout: float) -> None: super().__init__() self.net = nn.Sequential( nn.LayerNorm(in_dim), nn.Dropout(dropout), nn.Linear(in_dim, num_classes), ) def forward(self, x: torch.Tensor) -> torch.Tensor: return self.net(x) class GatedExpertClassifier(nn.Module): def __init__(self, in_dim: int, hidden_dim: int, num_classes: int, dropout: float) -> None: super().__init__() self.net = nn.Sequential( nn.LayerNorm(in_dim), nn.Dropout(dropout), nn.Linear(in_dim, hidden_dim), nn.GELU(), nn.Dropout(dropout), nn.Linear(hidden_dim, num_classes), ) def forward(self, x: torch.Tensor) -> torch.Tensor: return self.net(x) class MetadataHead(nn.Module): def __init__(self, in_dim: int, out_dim: int, dropout: float) -> None: super().__init__() hidden_dim = max(out_dim * 2, 32) self.net = nn.Sequential( nn.LayerNorm(in_dim), nn.Linear(in_dim, hidden_dim), nn.GELU(), nn.Dropout(dropout), nn.Linear(hidden_dim, out_dim), nn.GELU(), nn.LayerNorm(out_dim), ) def forward(self, metadata: torch.Tensor) -> torch.Tensor: return self.net(metadata) class MetadataChannelGate(nn.Module): def __init__(self, metadata_input_dim: int, channel_dim: int, hidden_dim: int, dropout: float) -> None: super().__init__() self.norm = nn.LayerNorm(metadata_input_dim) self.fc1 = nn.Linear(metadata_input_dim, hidden_dim) self.act = nn.GELU() self.dropout = nn.Dropout(dropout) self.fc2 = nn.Linear(hidden_dim, channel_dim) nn.init.zeros_(self.fc2.weight) nn.init.constant_(self.fc2.bias, 2.0) def forward(self, metadata: torch.Tensor) -> torch.Tensor: gate = self.norm(metadata) gate = self.fc1(gate) gate = self.act(gate) gate = self.dropout(gate) gate = torch.sigmoid(self.fc2(gate)) return gate class DualEffB2MetadataClassifier(nn.Module): def __init__( self, num_classes: int, metadata_input_dim: int, branch_dim: int, metadata_dim: int, classifier_hidden_dim: int, dropout: float, imagenet_pretrained: bool, clinical_backbone_backend: str, dermoscopic_backbone_backend: str, backbone: str = "efficientnet_b2", disable_metadata: bool = False, metadata_fusion: str = "concat", image_fusion: str = "concat", metadata_gate_hidden_dim: int | None = None, classifier_style: str = "legacy", logit_fusion_mode: str = "single", fusion_logit_weight: float = 0.6, clinical_logit_weight: float = 0.2, dermoscopic_logit_weight: float = 0.2, ) -> None: super().__init__() if metadata_fusion not in ("concat", "gated_concat", "gated_only"): raise ValueError(f"Unsupported metadata_fusion: {metadata_fusion}") if image_fusion not in ( "concat", "cross_attention", "co_attention", "compact_bilinear", "low_rank_bilinear", "adaptive_gate", "moe", "shared_private", *ONE_ENCODER_IMAGE_FUSIONS, ): raise ValueError(f"Unsupported image_fusion: {image_fusion}") if logit_fusion_mode not in ("single", "fixed"): raise ValueError(f"Unsupported logit_fusion_mode: {logit_fusion_mode}") if is_one_encoder_image_fusion(image_fusion) and logit_fusion_mode != "single": raise ValueError(f"{image_fusion} supports only --logit-fusion-mode single.") if classifier_style not in ("legacy", "simple"): raise ValueError(f"Unsupported classifier_style: {classifier_style}") self.clinical_backbone_backend = clinical_backbone_backend self.dermoscopic_backbone_backend = dermoscopic_backbone_backend self.backbone = normalize_backbone_name(backbone) self.disable_metadata = disable_metadata self.metadata_dim = metadata_dim self.metadata_fusion = metadata_fusion self.image_fusion = image_fusion self.classifier_style = classifier_style self.logit_fusion_mode = logit_fusion_mode self.fusion_logit_weight = fusion_logit_weight self.clinical_logit_weight = clinical_logit_weight self.dermoscopic_logit_weight = dermoscopic_logit_weight self.one_encoder = is_one_encoder_image_fusion(image_fusion) if self.one_encoder: if clinical_backbone_backend != dermoscopic_backbone_backend: raise ValueError(f"{image_fusion} requires one shared backend, got different branch backends.") self.shared_encoder, shared_feature_dim = build_feature_encoder( backbone, clinical_backbone_backend, imagenet_pretrained, ) clinical_feature_dim = shared_feature_dim dermoscopic_feature_dim = shared_feature_dim else: self.clinical_encoder, clinical_feature_dim = build_feature_encoder( backbone, clinical_backbone_backend, imagenet_pretrained, ) self.dermoscopic_encoder, dermoscopic_feature_dim = build_feature_encoder( backbone, dermoscopic_backbone_backend, imagenet_pretrained, ) self.clinical_head = ProjectionHead(clinical_feature_dim, branch_dim, dropout) self.dermoscopic_head = ProjectionHead(dermoscopic_feature_dim, branch_dim, dropout) if self.one_encoder: self.shared_head = ProjectionHead(shared_feature_dim, branch_dim, dropout) self.metadata_head = MetadataHead(metadata_input_dim, metadata_dim, dropout) if metadata_fusion in ("gated_concat", "gated_only"): gate_hidden_dim = metadata_gate_hidden_dim if metadata_gate_hidden_dim is not None else metadata_dim if self.one_encoder: self.shared_metadata_gate = MetadataChannelGate( metadata_input_dim, shared_feature_dim, gate_hidden_dim, dropout, ) else: self.clinical_metadata_gate = MetadataChannelGate( metadata_input_dim, clinical_feature_dim, gate_hidden_dim, dropout, ) self.dermoscopic_metadata_gate = MetadataChannelGate( metadata_input_dim, dermoscopic_feature_dim, gate_hidden_dim, dropout, ) metadata_output_dim = 0 if metadata_fusion == "gated_only" else metadata_dim fused_dim = self._fusion_dim(branch_dim, metadata_output_dim, image_fusion) heads = 4 if branch_dim % 4 == 0 else 1 if image_fusion == "cross_attention": self.cross_attention = nn.MultiheadAttention(branch_dim, heads, dropout=dropout, batch_first=True) self.cross_attention_norm = nn.LayerNorm(branch_dim * 2) elif image_fusion == "co_attention": self.co_attention = nn.MultiheadAttention(branch_dim, heads, dropout=dropout, batch_first=True) self.co_attention_norm = nn.LayerNorm(branch_dim * 4) elif image_fusion in ("compact_bilinear", "low_rank_bilinear"): self.bilinear_clinical = nn.Linear(branch_dim, branch_dim) self.bilinear_dermoscopic = nn.Linear(branch_dim, branch_dim) self.bilinear_norm = nn.LayerNorm(branch_dim) elif image_fusion == "adaptive_gate": gate_input_dim = branch_dim * 2 + metadata_output_dim self.image_gate = nn.Sequential( nn.LayerNorm(gate_input_dim), nn.Linear(gate_input_dim, max(branch_dim, 64)), nn.GELU(), nn.Dropout(dropout), nn.Linear(max(branch_dim, 64), branch_dim), nn.Sigmoid(), ) elif image_fusion == "moe": clinical_expert_dim = branch_dim + metadata_output_dim dermoscopic_expert_dim = branch_dim + metadata_output_dim joint_expert_dim = branch_dim * 2 + metadata_output_dim router_dim = branch_dim * 2 + metadata_output_dim self.clinical_expert = GatedExpertClassifier(clinical_expert_dim, classifier_hidden_dim, num_classes, dropout) self.dermoscopic_expert = GatedExpertClassifier( dermoscopic_expert_dim, classifier_hidden_dim, num_classes, dropout, ) self.joint_expert = GatedExpertClassifier(joint_expert_dim, classifier_hidden_dim, num_classes, dropout) self.expert_router = nn.Sequential( nn.LayerNorm(router_dim), nn.Dropout(dropout), nn.Linear(router_dim, 3), ) elif image_fusion == "shared_private": if clinical_feature_dim != dermoscopic_feature_dim: raise ValueError("shared_private image fusion requires matching branch feature dimensions.") self.shared_head = ProjectionHead(clinical_feature_dim, branch_dim, dropout) self.classifier = ( None if image_fusion == "moe" else self._classifier(fused_dim, classifier_hidden_dim, num_classes, dropout, classifier_style) ) if logit_fusion_mode == "fixed": self.clinical_classifier = BranchClassifier(branch_dim, num_classes, dropout) self.dermoscopic_classifier = BranchClassifier(branch_dim, num_classes, dropout) else: self.clinical_classifier = None self.dermoscopic_classifier = None # LWS is a post-training stage. Keep scales frozen during normal # representation/classifier training and enable them explicitly later. self.class_scales = nn.Parameter(torch.ones(num_classes), requires_grad=False) @staticmethod def _classifier( in_dim: int, hidden_dim: int, num_classes: int, dropout: float, classifier_style: str, ) -> nn.Sequential: if classifier_style == "simple": return nn.Sequential( nn.Linear(in_dim, hidden_dim), nn.ReLU(), nn.Dropout(dropout), nn.Linear(hidden_dim, num_classes), ) return nn.Sequential( nn.LayerNorm(in_dim), nn.Dropout(dropout), nn.Linear(in_dim, hidden_dim), nn.GELU(), nn.Dropout(dropout), nn.Linear(hidden_dim, num_classes), ) @staticmethod def _fusion_dim(branch_dim: int, metadata_dim: int, image_fusion: str) -> int: if image_fusion in ("concat", "cross_attention"): image_dim = branch_dim * 2 elif image_fusion in ( "compact_bilinear", "low_rank_bilinear", "adaptive_gate", "shared_private", "shared_encoder_pool", ): image_dim = branch_dim * 3 elif image_fusion == "single_encoder_canvas": image_dim = branch_dim elif image_fusion == "co_attention": image_dim = branch_dim * 4 elif image_fusion == "moe": image_dim = branch_dim * 2 else: raise ValueError(f"Unsupported image_fusion: {image_fusion}") return image_dim + metadata_dim def forward( self, clinical: torch.Tensor, dermoscopic: torch.Tensor, metadata: torch.Tensor, ) -> torch.Tensor: if self.one_encoder: fusion_logits = self._one_encoder_logits(clinical, dermoscopic, metadata) return fusion_logits * self.class_scales if self.metadata_fusion in ("gated_concat", "gated_only"): clinical_features = self.encode_with_metadata_gate( self.clinical_encoder, self.clinical_backbone_backend, clinical, metadata, self.clinical_metadata_gate, ) dermoscopic_features = self.encode_with_metadata_gate( self.dermoscopic_encoder, self.dermoscopic_backbone_backend, dermoscopic, metadata, self.dermoscopic_metadata_gate, ) else: clinical_features = self.clinical_encoder(clinical) dermoscopic_features = self.dermoscopic_encoder(dermoscopic) clinical_features = torch.flatten(clinical_features, 1) dermoscopic_features = torch.flatten(dermoscopic_features, 1) clinical_repr = self.clinical_head(clinical_features) dermoscopic_repr = self.dermoscopic_head(dermoscopic_features) metadata_repr = None if self.metadata_fusion == "gated_only": metadata_repr = None else: if self.disable_metadata: metadata_repr = clinical_repr.new_zeros((clinical_repr.size(0), self.metadata_dim)) else: metadata_repr = self.metadata_head(metadata) if self.image_fusion == "moe": fusion_logits = self._moe_logits(clinical_repr, dermoscopic_repr, metadata_repr) else: fused = self._fused_features(clinical_features, dermoscopic_features, clinical_repr, dermoscopic_repr, metadata_repr) fusion_logits = self.classifier(fused) if self.logit_fusion_mode != "fixed": return fusion_logits * self.class_scales clinical_logits = self.clinical_classifier(clinical_repr) dermoscopic_logits = self.dermoscopic_classifier(dermoscopic_repr) return ( self.fusion_logit_weight * fusion_logits + self.clinical_logit_weight * clinical_logits + self.dermoscopic_logit_weight * dermoscopic_logits ) * self.class_scales def _one_encoder_logits( self, clinical: torch.Tensor, dermoscopic: torch.Tensor, metadata: torch.Tensor, ) -> torch.Tensor: if self.image_fusion == "single_encoder_canvas": combined = torch.cat([clinical, dermoscopic], dim=-1) features = self._encode_shared(combined, metadata) repr_ = self.shared_head(features) fused_image = repr_ elif self.image_fusion == "shared_encoder_pool": clinical_features = self._encode_shared(clinical, metadata) dermoscopic_features = self._encode_shared(dermoscopic, metadata) clinical_repr = self.shared_head(clinical_features) dermoscopic_repr = self.shared_head(dermoscopic_features) fused_image = torch.cat( [ 0.5 * (clinical_repr + dermoscopic_repr), torch.abs(clinical_repr - dermoscopic_repr), clinical_repr * dermoscopic_repr, ], dim=1, ) else: raise ValueError(f"Unsupported one-encoder image_fusion: {self.image_fusion}") metadata_repr = self._metadata_repr(fused_image, metadata) return self.classifier(self._append_metadata(fused_image, metadata_repr)) def _encode_shared(self, images: torch.Tensor, metadata: torch.Tensor) -> torch.Tensor: if self.metadata_fusion in ("gated_concat", "gated_only"): features = self.encode_with_metadata_gate( self.shared_encoder, self.clinical_backbone_backend, images, metadata, self.shared_metadata_gate, ) else: features = self.shared_encoder(images) return torch.flatten(features, 1) def _metadata_repr(self, image_repr: torch.Tensor, metadata: torch.Tensor) -> torch.Tensor | None: if self.metadata_fusion == "gated_only": return None if self.disable_metadata: return image_repr.new_zeros((image_repr.size(0), self.metadata_dim)) return self.metadata_head(metadata) def _append_metadata(self, features: torch.Tensor, metadata_repr: torch.Tensor | None) -> torch.Tensor: if metadata_repr is None: return features return torch.cat([features, metadata_repr], dim=1) def _fused_features( self, clinical_features: torch.Tensor, dermoscopic_features: torch.Tensor, clinical_repr: torch.Tensor, dermoscopic_repr: torch.Tensor, metadata_repr: torch.Tensor | None, ) -> torch.Tensor: if self.image_fusion == "concat": fused = torch.cat([clinical_repr, dermoscopic_repr], dim=1) elif self.image_fusion == "cross_attention": tokens = torch.stack([clinical_repr, dermoscopic_repr], dim=1) attended, _ = self.cross_attention(tokens, tokens, tokens) fused = self.cross_attention_norm(attended.reshape(attended.size(0), -1)) elif self.image_fusion == "co_attention": tokens = torch.stack([clinical_repr, dermoscopic_repr], dim=1) attended, _ = self.co_attention(tokens, tokens, tokens) updated = tokens + attended fused = torch.cat( [ clinical_repr, dermoscopic_repr, updated[:, 0], updated[:, 1], ], dim=1, ) fused = self.co_attention_norm(fused) elif self.image_fusion in ("compact_bilinear", "low_rank_bilinear"): bilinear = self.bilinear_clinical(clinical_repr) * self.bilinear_dermoscopic(dermoscopic_repr) bilinear = self.bilinear_norm(bilinear) fused = torch.cat([clinical_repr, dermoscopic_repr, bilinear], dim=1) elif self.image_fusion == "adaptive_gate": gate_input = torch.cat([clinical_repr, dermoscopic_repr], dim=1) if metadata_repr is not None: gate_input = torch.cat([gate_input, metadata_repr], dim=1) gate = self.image_gate(gate_input) gated = gate * clinical_repr + (1.0 - gate) * dermoscopic_repr fused = torch.cat([gated, torch.abs(clinical_repr - dermoscopic_repr), clinical_repr * dermoscopic_repr], dim=1) elif self.image_fusion == "shared_private": clinical_shared = self.shared_head(clinical_features) dermoscopic_shared = self.shared_head(dermoscopic_features) shared = 0.5 * (clinical_shared + dermoscopic_shared) fused = torch.cat([clinical_repr, dermoscopic_repr, shared], dim=1) else: raise ValueError(f"Unsupported image_fusion: {self.image_fusion}") return self._append_metadata(fused, metadata_repr) def _moe_logits( self, clinical_repr: torch.Tensor, dermoscopic_repr: torch.Tensor, metadata_repr: torch.Tensor | None, ) -> torch.Tensor: clinical_input = self._append_metadata(clinical_repr, metadata_repr) dermoscopic_input = self._append_metadata(dermoscopic_repr, metadata_repr) joint_input = self._append_metadata(torch.cat([clinical_repr, dermoscopic_repr], dim=1), metadata_repr) expert_logits = torch.stack( [ self.clinical_expert(clinical_input), self.dermoscopic_expert(dermoscopic_input), self.joint_expert(joint_input), ], dim=1, ) router_weights = torch.softmax(self.expert_router(joint_input), dim=1) return (expert_logits * router_weights[:, :, None]).sum(dim=1) def encode_with_metadata_gate( self, encoder: nn.Module, backbone_backend: str, images: torch.Tensor, metadata: torch.Tensor, gate_module: MetadataChannelGate, ) -> torch.Tensor: feature_map = extract_spatial_features(encoder, backbone_backend, self.backbone, images) if self.disable_metadata: gate = feature_map.new_ones((feature_map.size(0), feature_map.size(1))) else: gate = gate_module(metadata).to(device=feature_map.device, dtype=feature_map.dtype) gated = feature_map * gate[:, :, None, None] return F.adaptive_avg_pool2d(gated, 1) class DualConvNeXtMetadataClassifier(DualEffB2MetadataClassifier): """Dual-image metadata classifier backed by independent ConvNeXt Base encoders.""" def __init__(self, *args, **kwargs) -> None: backbone = normalize_backbone_name(kwargs.pop("backbone", "convnext_base")) if backbone != "convnext_base": raise ValueError( "DualConvNeXtMetadataClassifier only supports the convnext_base backbone, " f"got {backbone!r}." ) super().__init__(*args, backbone=backbone, **kwargs) def normalize_backbone_name(name: str) -> str: name = name.lower().replace(" ", "").replace("_", "").replace("-", "") if name in ("tfefficientnetv2b2", "efficientnetv2b2", "effnetv2b2", "effv2b2"): return "tf_efficientnetv2_b2" if name in ("efficientnetb2", "effnetb2", "effb2"): return "efficientnet_b2" if name in ("efficientnetb1", "effnetb1", "effb1"): return "efficientnet_b1" if name in ("resnet50", "resnet_50"): return "resnet50" if name in ("convnextbase", "convxbase"): return "convnext_base" raise ValueError(f"Unknown backbone: {name}") def model_class_for_backbone(backbone: str) -> type[DualEffB2MetadataClassifier]: """Return the dedicated model class for a normalized backbone name.""" backbone = normalize_backbone_name(backbone) if backbone == "convnext_base": return DualConvNeXtMetadataClassifier return DualEffB2MetadataClassifier def default_image_size(backbone: str) -> int: """Return the training/inference resolution used when --image-size is omitted.""" backbone = normalize_backbone_name(backbone) if backbone == "efficientnet_b2": return 260 if backbone == "tf_efficientnetv2_b2": return 384 if backbone == "efficientnet_b1": return 240 if backbone == "convnext_base": return 384 return 224 def resolve_image_size(backbone: str, image_size: int | None) -> int: """Use an explicit image size when provided, otherwise use the backbone default.""" return int(image_size) if image_size is not None else default_image_size(backbone) def extract_spatial_features(encoder: nn.Module, backbone_backend: str, backbone: str, images: torch.Tensor) -> torch.Tensor: if backbone_backend == "timm": features = encoder.forward_features(images) if isinstance(features, (tuple, list)): features = features[-1] elif backbone_backend == "torchvision": if backbone in ("efficientnet_b2", "efficientnet_b1", "convnext_base"): features = encoder.features(images) elif backbone == "resnet50": features = encoder.conv1(images) features = encoder.bn1(features) features = encoder.relu(features) features = encoder.maxpool(features) features = encoder.layer1(features) features = encoder.layer2(features) features = encoder.layer3(features) features = encoder.layer4(features) else: raise ValueError(f"Unsupported torchvision backbone for gated fusion: {backbone}") else: raise ValueError(f"Unsupported backbone backend: {backbone_backend}") if features.ndim != 4: raise RuntimeError( f"Expected spatial feature map [B, C, H, W] for gated fusion, got shape {tuple(features.shape)}" ) return features def build_feature_encoder(backbone: str, backbone_backend: str, imagenet_pretrained: bool) -> tuple[nn.Module, int]: backbone = normalize_backbone_name(backbone) if backbone_backend == "timm": model = timm.create_model( backbone, pretrained=imagenet_pretrained, num_classes=0, global_pool="avg", ) return model, int(model.num_features) if backbone_backend == "torchvision": if backbone == "tf_efficientnetv2_b2": raise ValueError("tf_efficientnetv2_b2 is only available with --backbone-backend timm.") if backbone == "efficientnet_b2": from torchvision.models import efficientnet_b2, EfficientNet_B2_Weights weights = EfficientNet_B2_Weights.IMAGENET1K_V1 if imagenet_pretrained else None model = efficientnet_b2(weights=weights) feature_dim = int(model.classifier[1].in_features) model.classifier = nn.Identity() return model, feature_dim elif backbone == "efficientnet_b1": from torchvision.models import efficientnet_b1, EfficientNet_B1_Weights weights = EfficientNet_B1_Weights.IMAGENET1K_V1 if imagenet_pretrained else None model = efficientnet_b1(weights=weights) feature_dim = int(model.classifier[1].in_features) model.classifier = nn.Identity() return model, feature_dim elif backbone == "resnet50": from torchvision.models import resnet50, ResNet50_Weights weights = ResNet50_Weights.IMAGENET1K_V1 if imagenet_pretrained else None model = resnet50(weights=weights) feature_dim = int(model.fc.in_features) model.fc = nn.Identity() return model, feature_dim elif backbone == "convnext_base": from torchvision.models import convnext_base, ConvNeXt_Base_Weights weights = ConvNeXt_Base_Weights.IMAGENET1K_V1 if imagenet_pretrained else None model = convnext_base(weights=weights) feature_dim = int(model.classifier[2].in_features) model.classifier = nn.Identity() return model, feature_dim else: raise ValueError(f"Unsupported torchvision backbone: {backbone}") raise ValueError(f"Unsupported backbone backend: {backbone_backend}") def set_encoder_trainable(model: DualEffB2MetadataClassifier, trainable: bool) -> None: if getattr(model, "one_encoder", False): for param in model.shared_encoder.parameters(): param.requires_grad = trainable return for param in model.clinical_encoder.parameters(): param.requires_grad = trainable for param in model.dermoscopic_encoder.parameters(): param.requires_grad = trainable