#!/usr/bin/env python3 """ Prepare a one-class, one-modality MILK10k folder for Stable Diffusion training. MILK10k has two images per lesion/sample: - clinical: close-up - dermoscopic This script exports only one requested modality. For example, if you prepare clinical_close_up MEL data, the paired dermoscopic MEL image from the same lesion_id is not copied. The output format is simple and works with common DreamBooth/LoRA trainers: /images/*.jpg /images/*.txt /training_manifest.csv """ from __future__ import annotations import argparse import csv import random import shutil from pathlib import Path LABEL_COLUMNS = [ "AKIEC", "BCC", "BEN_OTH", "BKL", "DF", "INF", "MAL_OTH", "MEL", "NV", "SCCKA", "VASC", ] CLASS_PROMPTS = { "AKIEC": "actinic keratosis or intraepithelial carcinoma skin lesion", "BCC": "basal cell carcinoma skin lesion", "BEN_OTH": "benign other skin lesion", "BKL": "benign keratosis-like skin lesion", "DF": "dermatofibroma skin lesion", "INF": "inflammatory skin lesion", "MAL_OTH": "other malignant skin lesion", "MEL": "melanoma skin lesion", "NV": "melanocytic nevus skin lesion", "SCCKA": "squamous cell carcinoma or keratoacanthoma skin lesion", "VASC": "vascular skin lesion", } IMAGE_TYPE_PROMPTS = { "clinical_close_up": "clinical close-up dermatology photograph", "dermoscopic": "dermoscopic dermatology image", } def parse_args() -> argparse.Namespace: parser = argparse.ArgumentParser(description="Export MILK10k images for one-class Stable Diffusion training.") parser.add_argument("--data-dir", type=Path, default=Path("."), help="MILK10k root folder.") parser.add_argument("--output-dir", type=Path, required=True, help="Output training folder.") parser.add_argument("--class-name", required=True, choices=LABEL_COLUMNS) parser.add_argument( "--image-type", required=True, choices=["clinical_close_up", "dermoscopic"], help="Export exactly one modality. clinical_close_up never copies dermoscopic images, and vice versa.", ) parser.add_argument("--max-images", type=int, default=None) parser.add_argument("--seed", type=int, default=42) parser.add_argument("--shuffle", action="store_true") parser.add_argument("--copy", action="store_true", help="Copy images instead of creating symlinks.") parser.add_argument("--caption", default=None, help="Override caption text written next to each image.") return parser.parse_args() def normalize_image_type(image_type: str) -> str: if image_type == "clinical: close-up": return "clinical_close_up" return image_type.replace(" ", "_").replace(":", "").replace("-", "_") def load_class_modality_rows(data_dir: Path, class_name: str, image_type: str) -> list[dict[str, str]]: input_dir = data_dir / "MILK10k_Training_Input" gt_path = data_dir / "MILK10k_Training_GroundTruth.csv" meta_path = data_dir / "MILK10k_Training_Metadata.csv" if not gt_path.exists() or not meta_path.exists() or not input_dir.exists(): raise FileNotFoundError( "Expected MILK10k_Training_GroundTruth.csv, MILK10k_Training_Metadata.csv, " "and MILK10k_Training_Input under --data-dir." ) selected_lesions = set() with gt_path.open(newline="") as f: for row in csv.DictReader(f): if float(row[class_name]) == 1.0: selected_lesions.add(row["lesion_id"]) rows = [] with meta_path.open(newline="") as f: for row in csv.DictReader(f): if row["lesion_id"] not in selected_lesions: continue image_type_norm = normalize_image_type(row["image_type"]) if image_type_norm != image_type: continue source_path = input_dir / row["lesion_id"] / f"{row['isic_id']}.jpg" if not source_path.exists(): continue rows.append( { "lesion_id": row["lesion_id"], "isic_id": row["isic_id"], "image_type_norm": image_type_norm, "source_path": str(source_path), } ) if not rows: raise ValueError(f"No images found for class={class_name}, image_type={image_type}") return rows def link_or_copy(src: Path, dst: Path, copy_file: bool) -> None: if dst.exists() or dst.is_symlink(): dst.unlink() if copy_file: shutil.copy2(src, dst) else: dst.symlink_to(src.resolve()) def main() -> None: args = parse_args() data_dir = args.data_dir.expanduser().resolve() output_dir = args.output_dir.expanduser().resolve() images_dir = output_dir / "images" images_dir.mkdir(parents=True, exist_ok=True) rows = load_class_modality_rows(data_dir, args.class_name, args.image_type) if args.shuffle: random.Random(args.seed).shuffle(rows) if args.max_images is not None: rows = rows[: args.max_images] caption = args.caption or f"{CLASS_PROMPTS[args.class_name]}, {IMAGE_TYPE_PROMPTS[args.image_type]}" manifest_path = output_dir / "training_manifest.csv" with manifest_path.open("w", newline="") as f: fieldnames = ["class_name", "image_type", "lesion_id", "isic_id", "source_path", "train_image_path", "caption"] writer = csv.DictWriter(f, fieldnames=fieldnames) writer.writeheader() for row in rows: dst_image = images_dir / f"{row['lesion_id']}_{row['isic_id']}_{args.image_type}.jpg" dst_caption = dst_image.with_suffix(".txt") link_or_copy(Path(row["source_path"]), dst_image, args.copy) dst_caption.write_text(caption + "\n", encoding="utf-8") writer.writerow( { "class_name": args.class_name, "image_type": args.image_type, "lesion_id": row["lesion_id"], "isic_id": row["isic_id"], "source_path": row["source_path"], "train_image_path": str(dst_image), "caption": caption, } ) print(f"Exported {len(rows)} {args.image_type} images for class {args.class_name}") print(f"Images/captions: {images_dir}") print(f"Manifest: {manifest_path}") if __name__ == "__main__": main()