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- interventions/exc_dropout/manifest.json +0 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00739.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00740.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00741.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00742.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00743.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00744.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00745.json +48 -0
- interventions/exc_dropout/specimen_479770916_intervention_pair_00746.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00482.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00483.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00484.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00485.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00486.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00487.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00488.json +48 -0
- interventions/exc_dropout/specimen_487664663_intervention_pair_00489.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01253.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01254.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01255.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01256.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01257.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01258.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01259.json +48 -0
- interventions/exc_dropout/specimen_488679042_intervention_pair_01260.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00225.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00226.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00227.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00228.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00229.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00230.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00231.json +48 -0
- interventions/exc_dropout/specimen_488683425_intervention_pair_00232.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_00996.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_00997.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_00998.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_00999.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_01000.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_01001.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_01002.json +48 -0
- interventions/exc_dropout/specimen_589427435_intervention_pair_01003.json +48 -0
- interventions/site_silence/manifest.json +0 -0
- interventions/site_silence/specimen_479770916_intervention_pair_00763.json +48 -0
- interventions/site_silence/specimen_479770916_intervention_pair_00764.json +48 -0
- interventions/site_silence/specimen_479770916_intervention_pair_00770.json +48 -0
- interventions/site_silence/specimen_487664663_intervention_pair_00506.json +48 -0
- interventions/site_silence/specimen_487664663_intervention_pair_00507.json +48 -0
- interventions/site_silence/specimen_487664663_intervention_pair_00509.json +48 -0
- interventions/site_silence/specimen_487664663_intervention_pair_00511.json +48 -0
- interventions/site_silence/specimen_487664663_intervention_pair_00512.json +48 -0
interventions/exc_dropout/manifest.json
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interventions/exc_dropout/specimen_479770916_intervention_pair_00739.json
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{
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"backend": "coreneuron",
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"all_traces_identical": true,
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"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
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"duplicated_source_sites_per_sign": {
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"status": "recorded",
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"kind": "intervention",
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"samples": 64,
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"shard_index": 739
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interventions/exc_dropout/specimen_479770916_intervention_pair_00740.json
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{
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"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
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"status": "recorded",
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"kind": "intervention",
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"morphology_id": "specimen_479770916",
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"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
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interventions/exc_dropout/specimen_479770916_intervention_pair_00741.json
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"all_traces_identical": true,
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"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
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| 9 |
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"duplicated_source_sites_per_sign": {
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"n_traces": 64,
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"policy": "normalized_by_type_arclength",
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},
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"status": "recorded",
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"kind": "intervention",
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"morphology_id": "specimen_479770916",
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"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
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}
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interventions/exc_dropout/specimen_479770916_intervention_pair_00742.json
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{
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"all_traces_identical": true,
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| 8 |
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"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
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},
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"min": 639
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},
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"status": "recorded",
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"min": 301
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},
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"unused_source_sites_per_sign": {
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"max": 338,
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}
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},
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"kind": "intervention",
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"morphology_id": "specimen_479770916",
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"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
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"samples": 64,
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"shard_index": 742
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}
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interventions/exc_dropout/specimen_479770916_intervention_pair_00743.json
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{
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"backend": "coreneuron",
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| 3 |
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"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
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|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 302,
|
| 16 |
+
"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
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"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 338,
|
| 34 |
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"mean": 338.0,
|
| 35 |
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"min": 338
|
| 36 |
+
},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
+
"max": 302,
|
| 39 |
+
"mean": 302.0,
|
| 40 |
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"min": 302
|
| 41 |
+
}
|
| 42 |
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},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
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"samples": 64,
|
| 47 |
+
"shard_index": 743
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_479770916_intervention_pair_00744.json
ADDED
|
@@ -0,0 +1,48 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 400.19235733599635,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 302,
|
| 16 |
+
"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
+
"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 338,
|
| 34 |
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"mean": 338.0,
|
| 35 |
+
"min": 338
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 302,
|
| 39 |
+
"mean": 302.0,
|
| 40 |
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"min": 302
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 744
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_479770916_intervention_pair_00745.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 402.90121156998794,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 302,
|
| 16 |
+
"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
+
"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 338,
|
| 34 |
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"mean": 338.0,
|
| 35 |
+
"min": 338
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 302,
|
| 39 |
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"mean": 302.0,
|
| 40 |
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"min": 302
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 745
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_479770916_intervention_pair_00746.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
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|
| 5 |
+
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|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
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|
| 15 |
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"max": 302,
|
| 16 |
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"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
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"n_traces": 52,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
+
"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
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"max": 338,
|
| 34 |
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"mean": 338.0,
|
| 35 |
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"min": 338
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
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"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
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"samples": 52,
|
| 47 |
+
"shard_index": 746
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00482.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
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|
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|
|
|
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|
|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
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|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
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"mean": 375.0,
|
| 35 |
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"min": 375
|
| 36 |
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},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
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"max": 265,
|
| 39 |
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"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 482
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00483.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 374.01868491698406,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
+
"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 483
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00484.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 371.25290395302,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
+
"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 484
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00485.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 378.18397633198765,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 485
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00486.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 369.98697741201613,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
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"mean": 1.0,
|
| 12 |
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"min": 1
|
| 13 |
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},
|
| 14 |
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|
| 15 |
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"max": 265,
|
| 16 |
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"mean": 265.0,
|
| 17 |
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"min": 265
|
| 18 |
+
},
|
| 19 |
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"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
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"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
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"mean": 264.0,
|
| 30 |
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"min": 264
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
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"max": 375,
|
| 34 |
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"mean": 375.0,
|
| 35 |
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"min": 375
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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"max": 265,
|
| 39 |
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"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
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}
|
| 42 |
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},
|
| 43 |
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"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
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"samples": 64,
|
| 47 |
+
"shard_index": 486
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00487.json
ADDED
|
@@ -0,0 +1,48 @@
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|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
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|
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|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 369.9267968320055,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
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"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
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"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
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"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 265,
|
| 39 |
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"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 487
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00488.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 370.551769023994,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
+
"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 488
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_487664663_intervention_pair_00489.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
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|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 52,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
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"mean": 264.0,
|
| 30 |
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"min": 264
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
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"max": 375,
|
| 34 |
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"mean": 375.0,
|
| 35 |
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"min": 375
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 265,
|
| 39 |
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"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
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}
|
| 42 |
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},
|
| 43 |
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"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
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"samples": 52,
|
| 47 |
+
"shard_index": 489
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01253.json
ADDED
|
@@ -0,0 +1,48 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 471.51576338300947,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 269,
|
| 34 |
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"mean": 269.0,
|
| 35 |
+
"min": 269
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 377,
|
| 39 |
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"mean": 377.0,
|
| 40 |
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"min": 377
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1253
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01254.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 468.98894302605186,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
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"max": 269,
|
| 34 |
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"mean": 269.0,
|
| 35 |
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"min": 269
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 377,
|
| 39 |
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"mean": 377.0,
|
| 40 |
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"min": 377
|
| 41 |
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}
|
| 42 |
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},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
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"samples": 64,
|
| 47 |
+
"shard_index": 1254
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01255.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
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|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
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|
| 6 |
+
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|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
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"min": 7
|
| 13 |
+
},
|
| 14 |
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|
| 15 |
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"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
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"max": 269,
|
| 34 |
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"mean": 269.0,
|
| 35 |
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"min": 269
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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|
| 39 |
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"mean": 377.0,
|
| 40 |
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|
| 41 |
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}
|
| 42 |
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},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
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"samples": 64,
|
| 47 |
+
"shard_index": 1255
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01256.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 459.91971692896914,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 269,
|
| 34 |
+
"mean": 269.0,
|
| 35 |
+
"min": 269
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 377,
|
| 39 |
+
"mean": 377.0,
|
| 40 |
+
"min": 377
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1256
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01257.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 465.5693501519272,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 269,
|
| 34 |
+
"mean": 269.0,
|
| 35 |
+
"min": 269
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 377,
|
| 39 |
+
"mean": 377.0,
|
| 40 |
+
"min": 377
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1257
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01258.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 468.4944031559862,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 269,
|
| 34 |
+
"mean": 269.0,
|
| 35 |
+
"min": 269
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 377,
|
| 39 |
+
"mean": 377.0,
|
| 40 |
+
"min": 377
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1258
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01259.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 466.00433833908755,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 269,
|
| 34 |
+
"mean": 269.0,
|
| 35 |
+
"min": 269
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 377,
|
| 39 |
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"mean": 377.0,
|
| 40 |
+
"min": 377
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1259
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488679042_intervention_pair_01260.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 445.02538028906565,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 7,
|
| 11 |
+
"mean": 7.0,
|
| 12 |
+
"min": 7
|
| 13 |
+
},
|
| 14 |
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"morphology_segments": {
|
| 15 |
+
"max": 377,
|
| 16 |
+
"mean": 377.0,
|
| 17 |
+
"min": 377
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 52,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 370,
|
| 29 |
+
"mean": 370.0,
|
| 30 |
+
"min": 370
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
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"max": 269,
|
| 34 |
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"mean": 269.0,
|
| 35 |
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"min": 269
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 377,
|
| 39 |
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"mean": 377.0,
|
| 40 |
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"min": 377
|
| 41 |
+
}
|
| 42 |
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},
|
| 43 |
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"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488679042",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_488679042.swc",
|
| 46 |
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"samples": 52,
|
| 47 |
+
"shard_index": 1260
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00225.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 378.81479485100135,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
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"mean": 283.0,
|
| 40 |
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"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 225
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00226.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 381.2222422870109,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
+
"mean": 283.0,
|
| 40 |
+
"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 226
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00227.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 383.05275923399313,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
+
"mean": 283.0,
|
| 40 |
+
"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 227
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00228.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 377.44515054700605,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
+
"mean": 283.0,
|
| 40 |
+
"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 228
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00229.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 386.6159756099951,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
+
"mean": 283.0,
|
| 40 |
+
"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 229
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00230.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 385.7078050179989,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
+
"mean": 283.0,
|
| 40 |
+
"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 230
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00231.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 381.4573668230005,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
+
"mean": 357.0,
|
| 35 |
+
"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
+
"mean": 283.0,
|
| 40 |
+
"min": 283
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 231
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_488683425_intervention_pair_00232.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 363.64781025701086,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 283,
|
| 16 |
+
"mean": 283.0,
|
| 17 |
+
"min": 283
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 52,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 282,
|
| 29 |
+
"mean": 282.0,
|
| 30 |
+
"min": 282
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 357,
|
| 34 |
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"mean": 357.0,
|
| 35 |
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"min": 357
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 283,
|
| 39 |
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"mean": 283.0,
|
| 40 |
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"min": 283
|
| 41 |
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}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_488683425",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/src/bnn_sim/assets/allen_l5_template.swc",
|
| 46 |
+
"samples": 52,
|
| 47 |
+
"shard_index": 232
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_00996.json
ADDED
|
@@ -0,0 +1,48 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 428.70480540796416,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 304,
|
| 34 |
+
"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 340,
|
| 39 |
+
"mean": 340.0,
|
| 40 |
+
"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 996
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_00997.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 430.4393803840503,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
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"max": 304,
|
| 34 |
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"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
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},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
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"max": 340,
|
| 39 |
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"mean": 340.0,
|
| 40 |
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"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 997
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_00998.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 430.13713898998685,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
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"min": 5
|
| 13 |
+
},
|
| 14 |
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|
| 15 |
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"max": 340,
|
| 16 |
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"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
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"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
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"max": 304,
|
| 34 |
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"mean": 304.0,
|
| 35 |
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"min": 304
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 340,
|
| 39 |
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"mean": 340.0,
|
| 40 |
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"min": 340
|
| 41 |
+
}
|
| 42 |
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},
|
| 43 |
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"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
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"samples": 64,
|
| 47 |
+
"shard_index": 998
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_00999.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 432.9491973789991,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 304,
|
| 34 |
+
"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 340,
|
| 39 |
+
"mean": 340.0,
|
| 40 |
+
"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 999
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_01000.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 430.6837503229617,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 304,
|
| 34 |
+
"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 340,
|
| 39 |
+
"mean": 340.0,
|
| 40 |
+
"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1000
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_01001.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 430.29269193997607,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 304,
|
| 34 |
+
"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 340,
|
| 39 |
+
"mean": 340.0,
|
| 40 |
+
"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1001
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_01002.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 434.24691668199375,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 304,
|
| 34 |
+
"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 340,
|
| 39 |
+
"mean": 340.0,
|
| 40 |
+
"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 1002
|
| 48 |
+
}
|
interventions/exc_dropout/specimen_589427435_intervention_pair_01003.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 416.19366161100334,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 5,
|
| 11 |
+
"mean": 5.0,
|
| 12 |
+
"min": 5
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 340,
|
| 16 |
+
"mean": 340.0,
|
| 17 |
+
"min": 340
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 52,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 335,
|
| 29 |
+
"mean": 335.0,
|
| 30 |
+
"min": 335
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 304,
|
| 34 |
+
"mean": 304.0,
|
| 35 |
+
"min": 304
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 340,
|
| 39 |
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"mean": 340.0,
|
| 40 |
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"min": 340
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_589427435",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_589427435.swc",
|
| 46 |
+
"samples": 52,
|
| 47 |
+
"shard_index": 1003
|
| 48 |
+
}
|
interventions/site_silence/manifest.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
interventions/site_silence/specimen_479770916_intervention_pair_00763.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 396.5861869310029,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 302,
|
| 16 |
+
"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
+
"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 338,
|
| 34 |
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"mean": 338.0,
|
| 35 |
+
"min": 338
|
| 36 |
+
},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
+
"max": 302,
|
| 39 |
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"mean": 302.0,
|
| 40 |
+
"min": 302
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 763
|
| 48 |
+
}
|
interventions/site_silence/specimen_479770916_intervention_pair_00764.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 397.34406405402115,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 302,
|
| 16 |
+
"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
+
"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 338,
|
| 34 |
+
"mean": 338.0,
|
| 35 |
+
"min": 338
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 302,
|
| 39 |
+
"mean": 302.0,
|
| 40 |
+
"min": 302
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 764
|
| 48 |
+
}
|
interventions/site_silence/specimen_479770916_intervention_pair_00770.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 386.1317672310106,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 302,
|
| 16 |
+
"mean": 302.0,
|
| 17 |
+
"min": 302
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 52,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 301,
|
| 29 |
+
"mean": 301.0,
|
| 30 |
+
"min": 301
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 338,
|
| 34 |
+
"mean": 338.0,
|
| 35 |
+
"min": 338
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 302,
|
| 39 |
+
"mean": 302.0,
|
| 40 |
+
"min": 302
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_479770916",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_479770916.swc",
|
| 46 |
+
"samples": 52,
|
| 47 |
+
"shard_index": 770
|
| 48 |
+
}
|
interventions/site_silence/specimen_487664663_intervention_pair_00506.json
ADDED
|
@@ -0,0 +1,48 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 368.07283702198765,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 506
|
| 48 |
+
}
|
interventions/site_silence/specimen_487664663_intervention_pair_00507.json
ADDED
|
@@ -0,0 +1,48 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 367.3587367659784,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
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|
| 15 |
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"max": 265,
|
| 16 |
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"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
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"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
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"unused_source_sites_per_sign": {
|
| 33 |
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"max": 375,
|
| 34 |
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"mean": 375.0,
|
| 35 |
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"min": 375
|
| 36 |
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},
|
| 37 |
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"used_sites_per_sign": {
|
| 38 |
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"max": 265,
|
| 39 |
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"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 507
|
| 48 |
+
}
|
interventions/site_silence/specimen_487664663_intervention_pair_00509.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 370.7241113920172,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
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"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
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"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
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},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
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"max": 265,
|
| 39 |
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"mean": 265.0,
|
| 40 |
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"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 509
|
| 48 |
+
}
|
interventions/site_silence/specimen_487664663_intervention_pair_00511.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "coreneuron",
|
| 3 |
+
"coreneuron_gpu": true,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 379.9740706300072,
|
| 6 |
+
"input_routing": {
|
| 7 |
+
"all_traces_identical": true,
|
| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
|
| 9 |
+
"duplicated_source_sites_per_sign": {
|
| 10 |
+
"max": 1,
|
| 11 |
+
"mean": 1.0,
|
| 12 |
+
"min": 1
|
| 13 |
+
},
|
| 14 |
+
"morphology_segments": {
|
| 15 |
+
"max": 265,
|
| 16 |
+
"mean": 265.0,
|
| 17 |
+
"min": 265
|
| 18 |
+
},
|
| 19 |
+
"n_traces": 64,
|
| 20 |
+
"policy": "normalized_by_type_arclength",
|
| 21 |
+
"source_sites_per_sign": {
|
| 22 |
+
"max": 639,
|
| 23 |
+
"mean": 639.0,
|
| 24 |
+
"min": 639
|
| 25 |
+
},
|
| 26 |
+
"status": "recorded",
|
| 27 |
+
"unique_source_sites_per_sign": {
|
| 28 |
+
"max": 264,
|
| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
|
| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
+
"min": 265
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
"kind": "intervention",
|
| 44 |
+
"morphology_id": "specimen_487664663",
|
| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
|
| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 511
|
| 48 |
+
}
|
interventions/site_silence/specimen_487664663_intervention_pair_00512.json
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
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|
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| 1 |
+
{
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| 2 |
+
"backend": "coreneuron",
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| 3 |
+
"coreneuron_gpu": true,
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| 4 |
+
"duration_ms": 6000,
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| 5 |
+
"elapsed_seconds": 361.7486286580097,
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| 6 |
+
"input_routing": {
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| 7 |
+
"all_traces_identical": true,
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| 8 |
+
"defensibility_note": "Exact source-channel routing is preserved only when morphology segment count matches source sites. normalized_by_type_arclength is a morphology-normalized smoke policy: each target basal/apical segment receives the nearest source site from the same compartment by normalized arclength.",
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| 9 |
+
"duplicated_source_sites_per_sign": {
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| 10 |
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"max": 1,
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| 11 |
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"mean": 1.0,
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| 12 |
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"min": 1
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| 13 |
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},
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| 14 |
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"morphology_segments": {
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| 15 |
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"max": 265,
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| 16 |
+
"mean": 265.0,
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| 17 |
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"min": 265
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| 18 |
+
},
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| 19 |
+
"n_traces": 64,
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| 20 |
+
"policy": "normalized_by_type_arclength",
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| 21 |
+
"source_sites_per_sign": {
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| 22 |
+
"max": 639,
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| 23 |
+
"mean": 639.0,
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| 24 |
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"min": 639
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| 25 |
+
},
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| 26 |
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"status": "recorded",
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| 27 |
+
"unique_source_sites_per_sign": {
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| 28 |
+
"max": 264,
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| 29 |
+
"mean": 264.0,
|
| 30 |
+
"min": 264
|
| 31 |
+
},
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| 32 |
+
"unused_source_sites_per_sign": {
|
| 33 |
+
"max": 375,
|
| 34 |
+
"mean": 375.0,
|
| 35 |
+
"min": 375
|
| 36 |
+
},
|
| 37 |
+
"used_sites_per_sign": {
|
| 38 |
+
"max": 265,
|
| 39 |
+
"mean": 265.0,
|
| 40 |
+
"min": 265
|
| 41 |
+
}
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| 42 |
+
},
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| 43 |
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"kind": "intervention",
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| 44 |
+
"morphology_id": "specimen_487664663",
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| 45 |
+
"morphology_path": "/home/davwis/main/workspace/bnn_sim/data/morphologies/allen_mouse_l5_spiny/specimen_487664663.swc",
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| 46 |
+
"samples": 64,
|
| 47 |
+
"shard_index": 512
|
| 48 |
+
}
|