import ast import colorsys import hashlib import json from pathlib import Path import numpy as np import pandas as pd try: import pydeck as pdk import streamlit as st except ImportError as exc: raise SystemExit( "viewer_fusion.py requires streamlit and pydeck.\n" "Install them with: pip install streamlit pydeck\n" "Then run: streamlit run viewer_fusion.py" ) from exc BASE_DIR = Path(__file__).resolve().parent FUSION_DIR = BASE_DIR / "datasets" / "fusion" ICON_PATH = BASE_DIR / "resources" / "erp.jpeg" TABLE_PATH = FUSION_DIR / "data_table.csv" META_NAMES_PATH = FUSION_DIR / "meta_column_names.json" META_COMPLETE_PATH = FUSION_DIR / "meta_column_complete.json" DEFAULT_PROPERTY = "texture:USDA_class" DEFAULT_VIEWPORT = {"lat": 50.0, "lon": 10.0, "zoom": 3.2} MAP_HEIGHT_PX = 560 CORE_UI_PROPERTIES = [ {"label": "USDA texture class", "property": "texture:USDA_class"}, {"label": "clay percentage", "property": "texture:clay_percentage (%)"}, {"label": "silt percentage", "property": "texture:silt_percentage (%)"}, {"label": "sand percentage", "property": "texture:sand_percentage (%)"}, {"label": "coarse fragments", "property": "texture:coarse_percentage (%)"}, {"label": "bulk density", "property": "mass_density:bulk_density (g/cm³)"}, {"label": "bulk density 0-10cm", "property": "mass_density:bulk_density_0_10cm (g/cm³)"}, {"label": "bulk density 10-20cm", "property": "mass_density:bulk_density_10_20cm (g/cm³)"}, {"label": "pH in water", "property": "chemical:pH_in_H2O"}, {"label": "pH in CaCl2", "property": "chemical:pH_in_CaCl2"}, {"label": "organic carbon", "property": "carbon:organic_carbon_content (g/kg)"}, {"label": "topsoil organic carbon", "property": "carbon:organic_carbon_content_topsoil (g/kg)"}, {"label": "calcium carbonate", "property": "carbon:CaCO3_content (g/kg)"}, {"label": "extractable nitrogen", "property": "fertility:N_extractable (g/kg)"}, {"label": "extractable phosphorus", "property": "fertility:P_extractable (mg/kg)"}, {"label": "extractable potassium", "property": "fertility:K_extractable (mg/kg)"}, {"label": "cation exchange capacity", "property": "fertility:cation_exchange_capacity (cmol(+)/kg)"}, {"label": "annual precipitation", "property": "climate:annual_precipitation (mm)"}, {"label": "annual temperature", "property": "climate:annual_temperature (°C)"}, {"label": "elevation", "property": "topography_geology:elevation (m)"}, {"label": "slope", "property": "topography_geology:slope (deg)"}, ] CORE_VIEWPORTS = { "europe": {"lat": 50.0, "lon": 10.0, "zoom": 3.2}, "iberia": {"lat": 40.0, "lon": -4.0, "zoom": 5.0}, "portugal": {"lat": 39.6, "lon": -8.0, "zoom": 6.0}, "spain": {"lat": 40.3, "lon": -3.7, "zoom": 5.6}, "france": {"lat": 46.6, "lon": 2.2, "zoom": 5.4}, "germany": {"lat": 51.2, "lon": 10.4, "zoom": 5.5}, "italy": {"lat": 42.8, "lon": 12.5, "zoom": 5.4}, "uk": {"lat": 54.2, "lon": -2.5, "zoom": 5.3}, "ireland": {"lat": 53.4, "lon": -8.0, "zoom": 6.0}, "netherlands": {"lat": 52.2, "lon": 5.3, "zoom": 7.0}, "poland": {"lat": 52.1, "lon": 19.4, "zoom": 5.7}, "greece": {"lat": 39.0, "lon": 22.0, "zoom": 5.6}, "scandinavia": {"lat": 62.0, "lon": 15.0, "zoom": 4.2}, "balkans": {"lat": 44.0, "lon": 20.0, "zoom": 5.0}, } BASE_COLUMNS = [ "id", "LAT_LONG", "GADM_IDS", "GADM_NAMES", "COUNTRY_CODE", "SAMPLE_DATE", "SAMPLE_DEPTH_RANGE_CM", "SAMPLE_SOURCE_DATASET", ] def split_property_name(name): if ":" not in name: return "other", name theme, prop = name.split(":", 1) return theme, prop def init_ui_state(): st.session_state.setdefault("selected_property", DEFAULT_PROPERTY) st.session_state.setdefault("viewport", DEFAULT_VIEWPORT.copy()) st.session_state.setdefault("ui_agent_messages", []) def apply_compact_layout(): st.markdown( """ """, unsafe_allow_html=True, ) @st.cache_data(show_spinner=False) def list_openai_models(api_key): try: from openai import OpenAI except ImportError: return [], "OpenAI SDK is not installed. Install it with: pip install openai" try: client = OpenAI(api_key=api_key) models = client.models.list() except Exception as exc: return [], f"Could not load OpenAI models: {exc}" model_ids = sorted(model.id for model in models.data) chat_like = [ model_id for model_id in model_ids if model_id.startswith(("gpt-", "o")) and not any(token in model_id for token in ("audio", "transcribe", "tts", "image", "realtime")) ] return chat_like or model_ids, None @st.cache_data(show_spinner=False) def load_metadata(): with open(META_NAMES_PATH, encoding="utf-8") as f: names = json.load(f)["column_names"] with open(META_COMPLETE_PATH, encoding="utf-8") as f: meta = json.load(f) groups = {} for name in names: theme, prop = split_property_name(name) groups.setdefault(theme, []).append((prop, name)) for theme in groups: groups[theme].sort(key=lambda item: item[0].lower()) return names, meta, dict(sorted(groups.items())) def parse_lat_long(value): if pd.isna(value): return np.nan, np.nan if isinstance(value, str): try: parsed = ast.literal_eval(value) except (SyntaxError, ValueError): return np.nan, np.nan else: parsed = value if not isinstance(parsed, (list, tuple)) or len(parsed) < 2: return np.nan, np.nan return float(parsed[0]), float(parsed[1]) def vector_mean(value): if pd.isna(value) or value == "": return np.nan if isinstance(value, str): try: value = ast.literal_eval(value) except (SyntaxError, ValueError): return np.nan if not isinstance(value, (list, tuple)): return np.nan nums = pd.to_numeric(pd.Series(value), errors="coerce").dropna() return float(nums.mean()) if len(nums) else np.nan @st.cache_data(show_spinner=False) def load_property_frame(property_name): columns = [ "id", "LAT_LONG", "GADM_NAMES", "COUNTRY_CODE", "SAMPLE_DEPTH_RANGE_CM", "SAMPLE_SOURCE_DATASET", property_name, ] df = pd.read_csv( TABLE_PATH, usecols=columns, low_memory=False, keep_default_na=True, ) lat_lon = df["LAT_LONG"].map(parse_lat_long) df["lat"] = [item[0] for item in lat_lon] df["lon"] = [item[1] for item in lat_lon] df = df.dropna(subset=["lat", "lon"]) return df def parse_sample_identity(sample_id): parts = str(sample_id).rsplit("_", 2) if len(parts) == 3: dataset_id, point_id, sample_id = parts return dataset_id, point_id, sample_id return "", str(sample_id), str(sample_id) COLOR_STOPS = [ (68, 1, 84), (59, 82, 139), (33, 145, 140), (94, 201, 98), (253, 231, 37), ] def interpolate_color(value, vmin, vmax): if pd.isna(value): return [150, 150, 150, 55] if pd.isna(vmin) or pd.isna(vmax) or vmax <= vmin: t = 0.5 else: t = float((value - vmin) / (vmax - vmin)) t = max(0.0, min(1.0, t)) pos = t * (len(COLOR_STOPS) - 1) left = int(np.floor(pos)) right = min(left + 1, len(COLOR_STOPS) - 1) frac = pos - left rgb = [ int(COLOR_STOPS[left][i] + frac * (COLOR_STOPS[right][i] - COLOR_STOPS[left][i])) for i in range(3) ] return rgb + [180] def category_color(value): if pd.isna(value) or value == "": return [150, 150, 150, 55] digest = hashlib.md5(str(value).encode("utf-8")).hexdigest() hue = int(digest[:8], 16) / 0xFFFFFFFF red, green, blue = colorsys.hsv_to_rgb(hue, 0.62, 0.92) return [int(red * 255), int(green * 255), int(blue * 255), 185] def get_visual_mode(property_meta): datatype = property_meta.get("datatype") is_array = property_meta.get("is_array_valued", False) if is_array: return "numeric vector mean" if datatype in {"int", "float"}: return "numeric scalar" return "categorical" def calculate_color_values(df, property_name, property_meta): raw = df[property_name] mode = get_visual_mode(property_meta) if mode == "numeric vector mean": values = raw.map(vector_mean) elif mode == "numeric scalar": values = pd.to_numeric(raw, errors="coerce") else: values = raw.fillna("").astype(str) return raw, values, mode def prepare_visual_values(df, property_name, property_meta, color_limits=None): raw, values, mode = calculate_color_values(df, property_name, property_meta) out = df.copy() out["display_value"] = raw.fillna("").astype(str) if mode.startswith("numeric"): non_null = values.dropna() if len(non_null): default_vmin = float(non_null.quantile(0.02)) default_vmax = float(non_null.quantile(0.98)) else: default_vmin = default_vmax = np.nan if color_limits: vmin, vmax = color_limits else: vmin, vmax = default_vmin, default_vmax out["color_value"] = values out["color"] = [interpolate_color(v, vmin, vmax) for v in values] legend = { "mode": mode, "valid": int(values.notna().sum()), "missing": int(values.isna().sum()), "min": float(non_null.min()) if len(non_null) else None, "max": float(non_null.max()) if len(non_null) else None, "p02": default_vmin if len(non_null) else None, "p98": default_vmax if len(non_null) else None, "vmin": vmin if len(non_null) else None, "vmax": vmax if len(non_null) else None, } else: categories = values.replace("", np.nan) unique_count = int(categories.nunique(dropna=True)) out["color_value"] = values out["color"] = [category_color(v) for v in values] legend = { "mode": mode, "valid": int(categories.notna().sum()), "missing": int(categories.isna().sum()), "unique": unique_count, "top_values": categories.value_counts(dropna=True).head(12).to_dict(), } out["property"] = property_name return out, legend def render_sidebar(groups, meta): st.sidebar.title("Fusion Viewer") api_key = st.sidebar.text_input( "OpenAI API token", type="password", help="Used only for this browser session. It is not saved to disk.", ) model = None agent_enabled = False if api_key.strip(): with st.sidebar.spinner("Loading models..."): models, model_error = list_openai_models(api_key.strip()) if model_error: st.sidebar.warning(model_error) elif models: preferred = "gpt-5" default_index = models.index(preferred) if preferred in models else 0 model = st.sidebar.selectbox("UI agent model", models, index=default_index) agent_enabled = True else: st.sidebar.warning("No OpenAI models available for this API token.") else: st.sidebar.selectbox( "UI agent model", ["Enter API token first"], index=0, disabled=True, ) search = st.sidebar.text_input( "Search property", "", placeholder="type part of theme:name (unit)", ) if search.strip(): needle = search.strip().lower() matches = [ name for theme_items in groups.values() for _, name in theme_items if needle in name.lower() ] if not matches: st.sidebar.warning("No matching properties.") return None st.sidebar.caption(f"{len(matches)} matching properties") property_name = st.sidebar.radio( "Matching properties", matches[:80], index=matches[:80].index(st.session_state.selected_property) if st.session_state.selected_property in matches[:80] else 0, format_func=lambda x: x, label_visibility="collapsed", ) st.session_state.selected_property = property_name if len(matches) > 80: st.sidebar.caption("Showing first 80 matches. Type more to narrow.") else: themes = list(groups.keys()) current_theme, _ = split_property_name(st.session_state.selected_property) theme_index = themes.index(current_theme) if current_theme in themes else 0 theme = st.sidebar.selectbox("Theme", themes, index=theme_index) options = [name for _, name in groups[theme]] property_index = ( options.index(st.session_state.selected_property) if st.session_state.selected_property in options else 0 ) property_name = st.sidebar.selectbox( "Property", options, index=property_index, format_func=lambda x: split_property_name(x)[1], ) st.session_state.selected_property = property_name with st.sidebar.expander("Property metadata", expanded=False): item = meta.get(property_name, {}) st.write("datatype:", item.get("datatype")) st.write("array:", item.get("is_array_valued")) st.write("null_fraction:", item.get("null_fraction")) st.write("source_datasets:", item.get("source_datasets")) description = item.get("description") if description: st.caption(description) return property_name, api_key, model, agent_enabled def render_color_controls(property_name, property_meta, df): raw, values, mode = calculate_color_values(df, property_name, property_meta) if not mode.startswith("numeric"): return None non_null = values.dropna() if not len(non_null): st.sidebar.warning("No numeric values available for this property.") return None data_min = float(non_null.min()) data_max = float(non_null.max()) default_vmin = float(non_null.quantile(0.02)) default_vmax = float(non_null.quantile(0.98)) st.sidebar.subheader("Color scale") st.sidebar.caption("Scale is computed from all samples for the selected property, not from the current map view.") property_key = hashlib.md5(property_name.encode("utf-8")).hexdigest()[:12] use_full_range = st.sidebar.checkbox( "Use full data range", value=False, key=f"use_full_range_{property_key}", ) if use_full_range: return data_min, data_max vmin = st.sidebar.number_input( "vmin", value=default_vmin, min_value=data_min, max_value=data_max, format="%.6g", key=f"vmin_{property_key}", ) vmax = st.sidebar.number_input( "vmax", value=default_vmax, min_value=data_min, max_value=data_max, format="%.6g", key=f"vmax_{property_key}", ) if vmax <= vmin: st.sidebar.warning("vmax must be larger than vmin; using percentile defaults.") return default_vmin, default_vmax return float(vmin), float(vmax) def render_legend(legend): cols = st.columns(4) cols[0].metric("Mode", legend["mode"]) cols[1].metric("Valid", f"{legend['valid']:,}") cols[2].metric("Missing", f"{legend['missing']:,}") if legend["mode"].startswith("numeric"): cols[3].metric("Range", "2%-98%") st.caption( f"Actual min/max: {legend['min']} / {legend['max']} | " f"color clamp: {legend['p02']} / {legend['p98']}" ) else: cols[3].metric("Unique", f"{legend['unique']:,}") if legend["top_values"]: st.caption("Top categories: " + "; ".join( f"{k}: {v}" for k, v in legend["top_values"].items() )) def render_colorbar(legend): if legend["mode"].startswith("numeric"): gradient = ", ".join(f"rgb({r}, {g}, {b})" for r, g, b in COLOR_STOPS) st.markdown( f"""