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- data/.bidsignore +0 -1
- data/.ipynb_checkpoints/README-checkpoint +0 -4
- data/.ipynb_checkpoints/data_tests-checkpoint.ipynb +0 -0
- data/.ipynb_checkpoints/dataset_description-checkpoint.json +0 -38
- data/.ipynb_checkpoints/participants-checkpoint.json +0 -174
- data/.ipynb_checkpoints/participants-checkpoint.tsv +0 -171
- data/CHANGES +0 -14
- data/README +0 -4
- data/data_tests.ipynb +0 -0
- data/dataset_description.json +0 -38
- data/participants.json +0 -174
- data/participants.tsv +0 -171
- data/sub-00001/anat/.ipynb_checkpoints/sub-00001_acq-iso08_T1w-checkpoint.json +0 -77
- data/sub-00001/anat/sub-00001_acq-T2sel_FLAIR.json +0 -78
- data/sub-00001/anat/sub-00001_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00001/anat/sub-00001_acq-T2sel_FLAIR_roi.nii.gz +0 -3
- data/sub-00001/anat/sub-00001_acq-iso08_T1w.json +0 -77
- data/sub-00001/anat/sub-00001_acq-iso08_T1w.nii.gz +0 -3
- data/sub-00002/anat/.ipynb_checkpoints/sub-00002_acq-T2sel_FLAIR-checkpoint.json +0 -78
- data/sub-00002/anat/.ipynb_checkpoints/sub-00002_acq-iso08_T1w-checkpoint.json +0 -77
- data/sub-00002/anat/sub-00002_acq-T2sel_FLAIR.json +0 -78
- data/sub-00002/anat/sub-00002_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00002/anat/sub-00002_acq-iso08_T1w.json +0 -77
- data/sub-00002/anat/sub-00002_acq-iso08_T1w.nii.gz +0 -3
- data/sub-00003/anat/sub-00003_acq-T2sel_FLAIR.json +0 -78
- data/sub-00003/anat/sub-00003_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00003/anat/sub-00003_acq-T2sel_FLAIR_roi.nii.gz +0 -3
- data/sub-00003/anat/sub-00003_acq-iso08_T1w.json +0 -77
- data/sub-00003/anat/sub-00003_acq-iso08_T1w.nii.gz +0 -3
- data/sub-00004/anat/sub-00004_acq-T2sel_FLAIR.json +0 -78
- data/sub-00004/anat/sub-00004_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00004/anat/sub-00004_acq-T2sel_FLAIR_roi.nii.gz +0 -3
- data/sub-00004/anat/sub-00004_acq-iso08_T1w.json +0 -77
- data/sub-00004/anat/sub-00004_acq-iso08_T1w.nii.gz +0 -3
- data/sub-00005/anat/sub-00005_acq-T2sel_FLAIR.json +0 -78
- data/sub-00005/anat/sub-00005_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00005/anat/sub-00005_acq-iso08_T1w.json +0 -77
- data/sub-00005/anat/sub-00005_acq-iso08_T1w.nii.gz +0 -3
- data/sub-00006/anat/sub-00006_acq-sag111_T1w.json +0 -72
- data/sub-00006/anat/sub-00006_acq-sag111_T1w.nii.gz +0 -3
- data/sub-00006/anat/sub-00006_acq-tse3dvfl_FLAIR.json +0 -74
- data/sub-00006/anat/sub-00006_acq-tse3dvfl_FLAIR.nii.gz +0 -3
- data/sub-00006/anat/sub-00006_acq-tse3dvfl_FLAIR_roi.nii.gz +0 -3
- data/sub-00007/anat/sub-00007_acq-T2sel_FLAIR.json +0 -78
- data/sub-00007/anat/sub-00007_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00007/anat/sub-00007_acq-iso08_T1w.json +0 -77
- data/sub-00007/anat/sub-00007_acq-iso08_T1w.nii.gz +0 -3
- data/sub-00008/anat/sub-00008_acq-T2sel_FLAIR.json +0 -78
- data/sub-00008/anat/sub-00008_acq-T2sel_FLAIR.nii.gz +0 -3
- data/sub-00008/anat/sub-00008_acq-iso08_T1w.json +0 -77
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data/.ipynb_checkpoints/README-checkpoint
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We present an MRI dataset of 85 people with epilepsy due to focal cortical dysplasia (FCD) type II and 85 healthy controls.
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In epilepsy imaging, automated detection of FCDs plays a vital role because FCDs often escape conventional MRI analysis. Accurate recognition of FCDs is essential for affected patients. Surgical resection of the dysplastic cortex is associated with a high success rate, and a substantial number of patients subsequently become seizure-free.
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We hope this dataset's publication will improve computer-aided FCD detection by enabling the validation of existing algorithms or aiding the development of new approaches.
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Our dataset includes MRI data from T1 and FLAIR weighted images, manually labeled lesion masks, and selected clinical features.
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data/.ipynb_checkpoints/data_tests-checkpoint.ipynb
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data/.ipynb_checkpoints/dataset_description-checkpoint.json
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{
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"Name": "An open presurgery MRI dataset of people with epilepsy and focal cortical dysplasia type II",
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"BIDSVersion": "1.6.0",
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"Authors": [
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"Fabiane Schuch",
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"Lennart Walger",
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"Matthias Schmitz",
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"Bastian David",
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"Tobias Bauer",
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"Antonia Harms",
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"Laura Fischbach",
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"Freya Schulte",
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"Martin Schidlowski",
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"Johannes Reiter",
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"Felix Bitzer",
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"Randi von Wrede",
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"Attila Rácz",
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"Tobias Baumgartner",
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"Valeri Borger",
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"Matthias Schneider",
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"Achim Flender",
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"Albert Becker",
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"Hartmut Vatter",
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"Bernd Weber",
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"Louisa Specht-Riemenschneider",
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"Alexander Radbruch",
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"Rainer Surges",
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"Theodor Rüber"
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],
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"EthicsApprovals": [
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"Ethics Committee of the University of Bonn"
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],
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"License": "CC0",
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"PipelineDescription": {
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"Name": "bonn_fcd"
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},
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"DatasetDOI": "doi:10.18112/openneuro.ds004199.v1.0.6"
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}
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data/.ipynb_checkpoints/participants-checkpoint.json
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{
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"group": {
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"Description": "the group a person belongs to",
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"Levels": {
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"fcd": "person with epilepsy, diagnosed with an FCD",
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"hc": "healthy control"
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}
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},
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"sex": {
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"Description": "sex of the participant",
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"Levels": {
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"M": "male",
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"F": "female"
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}
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},
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"age_epilepsyonset": {
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"Description": "categorized age in years at the time of the first seizure",
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"Levels":{
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"1": "0-5 years",
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"2": "6-10 years",
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"3": "11-15 years",
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"4": "16-20 years",
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"5": "21-25 years",
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"6": "26-30 years",
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"7": "31-35 years",
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"8": "36-40 years",
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"9": "41-45 years",
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"10": "46-50 years",
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"11": "51-55 years",
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"12": "56-60 years",
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"13": "61-65 years"
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}
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},
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"age_scan": {
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"Description": "categorized age in years at the time of MRI",
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"Levels":{
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"1": "1-5 years",
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"2": "6-10 years",
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"3": "11-15 years",
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"4": "16-20 years",
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"5": "21-25 years",
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"6": "26-30 years",
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"7": "31-35 years",
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"8": "36-40 years",
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"9": "41-45 years",
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"10": "46-50 years",
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"11": "51-55 years",
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"12": "56-60 years",
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"13": "61-65 years"
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}
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},
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"mri_diagnosis": {
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"Description": "diagnosis made by neuroradiologists at the University Hospital Bonn at the time of presurgical assesment",
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"Levels": {
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"suspicion": "Images suggest an FCD type II.",
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"none": "Images did not reveal any pathological changes.",
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"other": "Described structural changes, bu no suspected FCD."
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}
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},
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"map": {
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"Description": "morphometric analysis performed",
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"Levels": {
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"1": "was performed",
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"0": "was not performed"
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}
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},
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"spect": {
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"Description": "spect performed",
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"Levels": {
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"1": "was performed",
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"0": "was not performed"
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}
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},
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"pet": {
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"Description": "pet performed",
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"Levels": {
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"1": "was performed",
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"0": "was not performed"
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}
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},
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"invasive_EEG": {
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"Description": "invasive EEG diagnostic performed",
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"Levels": {
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"1": "was performed",
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"0": "was not performed"
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}
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},
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"op": {
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"Description": "epilepsy surgery performed",
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"Levels": {
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"1": "was performed",
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"0": "was not performed"
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}
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},
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"age_op": {
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"Description": "categorized age at the time of epilepsy surgery",
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"Levels": {
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"1": "1-5 years",
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"2": "6-10 years",
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"3": "11-15 years",
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"4": "16-20 years",
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"5": "21-25 years",
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"6": "26-30 years",
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"7": "31-35 years",
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"8": "36-40 years",
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"9": "41-45 years",
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"10": "46-50 years",
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"11": "51-55 years",
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"12": "56-60 years",
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"13": "61-65 years"
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}
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},
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"histopathology": {
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"Description": "histological classification according to the ILAE classification",
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"Levels": {
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"IIa": "Type IIa",
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"IIb": "Type IIb"
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}
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},
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"1year_outcome": {
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"Description": "postoperative outcome 12 months after epilepsy surgery according to the Engel classification ",
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"Levels": {
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"IA": "Engel IA: Completely seizure free since surgery",
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"IB": "Engel IB: Nondisabling simple partial seizures only since surgery",
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"IIA": "Engel IIA: Initially free of disabling seizures but has rare seizures now",
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"IIB": "Engel IIB: Rare disabling seizures since surgery",
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"IIIA": "Engel IIIA: Worthwhile seizure reduction",
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"IVB": "Engel IVB: No appreciable change"
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}
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},
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"latest_outcome": {
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"Description": "latest postoperative outcome after epilepsy surgery according to the Engel classification ",
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"Levels": {
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"IA": "Engel IA: Completely seizure free since surgery",
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"IB": "Engel IB: Nondisabling simple partial seizures only since surgery",
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"IC": "Engel IC: Some disabling seizures after surgery, but free of disabling seizures for at least 2 years",
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"IIA": "Engel IIA: Initially free of disabling seizures but has rare seizures now",
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"IIB": "Engel IIB: Rare disabling seizures since surgery",
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"IIC": "Engel IIC: More than rare disabling seizures since surgery, but rare seizures for the last 2 years",
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"IIIA": "Engel IIIA: Worthwhile seizure reduction",
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"IVB": "Engel IVB: No appreciable change",
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"IVC": "Engel IVC: Seizures worse"
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}
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},
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"time_follow-up": {
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"Description": "date of last follow-up in years after surgery",
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"Levels": {
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"1": "less than 1 year",
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"2": "1-2 years",
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"3": "3-4 years",
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"4": "5-6 years",
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"5": "7-8 years",
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"6": "9-10 years",
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"7": "11-12 years"
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}
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},
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"hemisphere": {
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"Description": "hemisphere affected by the FCD",
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"Levels": {
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"L": "left",
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"R": "right"
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}
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},
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"lobe": {
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"Description": "lobe affected by the FCD",
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"Levels": {
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"FL": "frontal lobe",
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"TL": "temporal lobe",
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"PL": "parietal lobe",
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"OL": "occipital lobe",
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"IL": "insular lobe"
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}
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}
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}
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data/.ipynb_checkpoints/participants-checkpoint.tsv
DELETED
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@@ -1,171 +0,0 @@
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| 1 |
-
participant_id group sex age_epilepsyonset age_scan mri_diagnosis map spect pet invasive_EEG op age_op histopathology 1year_outcome latest_outcome time_follow-up hemisphere lobe split
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| 2 |
-
sub-00058 fcd M 1 4 suspicion 0 0 0 0 1 4 IIb IA IA 2 L FL train
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| 3 |
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sub-00043 fcd F 2 4 suspicion 1 0 0 0 1 4 IIa IA IA 3 R FL train
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| 4 |
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sub-00133 fcd F 3 7 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R TL train
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| 5 |
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sub-00120 fcd M 7 8 suspicion 1 0 1 0 1 8 IIb IA IA 7 L FL train
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| 6 |
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sub-00060 fcd F 2 13 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R FL train
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| 7 |
-
sub-00047 fcd M 1 7 suspicion 1 0 0 1 1 7 IIa IVB IVB 2 L PL train
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| 8 |
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sub-00132 fcd M 1 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
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| 9 |
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sub-00059 fcd M 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
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| 10 |
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sub-00050 fcd M 5 9 suspicion 0 0 0 1 0 n/a n/a n/a n/a n/a L FL train
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| 11 |
-
sub-00027 fcd M 8 8 suspicion 0 0 0 0 1 9 IIb IA IA 2 R PL train
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| 12 |
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sub-00116 fcd M 1 4 suspicion 1 1 0 1 1 4 IIa IA IA 2 R FL train
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| 13 |
-
sub-00066 fcd F 2 8 none 1 1 1 1 1 8 IIb IA IA 5 L IL test
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| 14 |
-
sub-00090 fcd M 1 5 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L PL train
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| 15 |
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sub-00063 fcd M 1 11 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R TL,PL train
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| 16 |
-
sub-00048 fcd M 3 7 suspicion 1 0 0 1 1 7 IIb IA IA 2 L FL test
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| 17 |
-
sub-00040 fcd F 1 6 suspicion 1 0 0 0 1 6 IIb IA IA 4 R OL train
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| 18 |
-
sub-00064 fcd F 2 4 suspicion 1 0 0 1 1 4 IIa IA IIC 6 R PL test
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| 19 |
-
sub-00098 fcd F 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L TL train
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| 20 |
-
sub-00078 fcd F 3 9 suspicion 1 1 0 1 1 9 IIb IA IA 2 L FL train
|
| 21 |
-
sub-00061 fcd F 4 8 suspicion 1 0 0 1 1 8 IIb IIB IC 6 L PL test
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| 22 |
-
sub-00092 fcd M 1 9 suspicion 1 0 0 1 1 9 IIb n/a IA 1 R PL test
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| 23 |
-
sub-00087 fcd F 5 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
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| 24 |
-
sub-00099 fcd F 3 7 suspicion 1 0 0 1 1 8 IIa IIA IIIA 5 L TL,OL test
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| 25 |
-
sub-00032 fcd M 1 12 suspicion 1 0 0 1 1 12 IIb IIB IIIA 6 L PL test
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| 26 |
-
sub-00089 fcd F 9 11 suspicion 1 1 0 1 1 12 IIa IVB IVB 2 L TL train
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| 27 |
-
sub-00038 fcd M 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
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| 28 |
-
sub-00121 fcd F 2 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L TL test
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| 29 |
-
sub-00024 fcd M 2 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
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| 30 |
-
sub-00033 fcd M 1 7 suspicion 1 0 0 0 1 7 IIb IA IA 2 R FL train
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| 31 |
-
sub-00130 fcd M 1 3 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R FL train
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| 32 |
-
sub-00141 fcd M 4 5 suspicion 1 0 0 1 1 5 IIb IA IA 4 R FL train
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| 33 |
-
sub-00072 fcd F 1 4 suspicion 1 0 0 1 1 4 IIa IA IA 4 L FL train
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| 34 |
-
sub-00016 fcd M 1 6 suspicion 1 0 0 0 1 6 IIb IA IA 2 R PL train
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| 35 |
-
sub-00136 fcd M 2 6 suspicion 1 0 0 1 1 6 IIb IA IA 2 L FL test
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| 36 |
-
sub-00097 fcd F 3 10 suspicion 1 1 0 1 1 10 IIb IA IA 2 R FL train
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| 37 |
-
sub-00115 fcd F 1 6 suspicion 1 1 0 0 0 n/a n/a n/a n/a n/a L PL train
|
| 38 |
-
sub-00055 fcd M 2 5 suspicion 1 0 1 0 1 5 IIb IA IA 3 L PL train
|
| 39 |
-
sub-00018 fcd M 2 8 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 40 |
-
sub-00125 fcd F 1 4 suspicion 1 1 0 1 1 4 IIb IA IA 2 R FL test
|
| 41 |
-
sub-00091 fcd F 3 3 suspicion 1 0 0 0 1 3 IIa IA IA 2 L FL train
|
| 42 |
-
sub-00015 fcd F 2 6 suspicion 1 1 0 1 1 6 IIb IIB IVC 3 R FL train
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| 43 |
-
sub-00134 fcd F 4 7 suspicion 1 1 0 1 1 7 IIb n/a n/a n/a L FL test
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| 44 |
-
sub-00138 fcd M 2 4 suspicion 1 1 0 1 1 4 IIb IA IA 2 R PL train
|
| 45 |
-
sub-00006 fcd M 4 5 suspicion 1 0 1 1 1 5 IIa IA IA 6 L FL test
|
| 46 |
-
sub-00144 fcd M 2 5 suspicion 1 1 0 1 1 5 IIb IA IA 2 R FL test
|
| 47 |
-
sub-00044 fcd M 1 3 suspicion 1 0 0 1 1 3 IIa IA IIA 4 L FL train
|
| 48 |
-
sub-00076 fcd M 2 6 suspicion 1 1 1 1 1 6 IIa IA IIA 4 R IL train
|
| 49 |
-
sub-00112 fcd M 2 10 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 50 |
-
sub-00003 fcd M 1 11 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R PL train
|
| 51 |
-
sub-00139 fcd F 3 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L OL train
|
| 52 |
-
sub-00020 fcd M 1 3 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R PL test
|
| 53 |
-
sub-00140 fcd M 2 4 suspicion 0 0 0 0 1 4 IIa IA IA 5 L FL train
|
| 54 |
-
sub-00077 fcd F 1 5 suspicion 0 0 0 0 1 5 IIb n/a IVC 1 R PL train
|
| 55 |
-
sub-00109 fcd F 3 8 suspicion 0 1 0 0 1 8 IIb IA IA 3 R FL train
|
| 56 |
-
sub-00131 fcd F 1 5 suspicion 1 0 0 1 1 5 IIb IA IA 2 R FL train
|
| 57 |
-
sub-00142 fcd M 1 5 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L FL,PL test
|
| 58 |
-
sub-00053 fcd M 1 4 suspicion 0 1 0 0 1 4 IIa n/a IA 1 L FL train
|
| 59 |
-
sub-00014 fcd M 6 7 suspicion 0 0 0 0 1 7 IIb IA IA 2 R TL,OL train
|
| 60 |
-
sub-00107 fcd M 1 5 none 1 1 0 1 1 5 IIa IA IIIA 4 R FL test
|
| 61 |
-
sub-00105 fcd M 2 11 suspicion 0 0 0 1 0 n/a n/a n/a n/a n/a L FL train
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| 62 |
-
sub-00101 fcd F 4 12 suspicion 1 0 0 1 1 12 IIb IA IA 2 L FL train
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| 63 |
-
sub-00074 fcd F 2 4 other 1 1 1 1 1 4 IIb IA IA 7 L FL test
|
| 64 |
-
sub-00073 fcd F 1 4 suspicion 1 0 1 1 1 4 IIb IA IA 7 R TL,PL train
|
| 65 |
-
sub-00128 fcd F 2 10 suspicion 1 0 0 0 1 10 IIb IA IA 2 L PL test
|
| 66 |
-
sub-00068 fcd F 4 4 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 67 |
-
sub-00123 fcd F 2 3 suspicion 0 0 0 0 1 3 IIb IA IA 4 R FL train
|
| 68 |
-
sub-00108 fcd M 2 6 suspicion 1 1 0 1 1 6 IIb IA IA 3 R FL test
|
| 69 |
-
sub-00083 fcd M 6 6 none 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
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| 70 |
-
sub-00009 fcd M 4 4 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R IL test
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| 71 |
-
sub-00122 fcd M 1 4 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R TL train
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| 72 |
-
sub-00065 fcd M 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 73 |
-
sub-00071 fcd F 3 5 other 0 0 0 0 1 5 IIa IIB IIB 3 L FL train
|
| 74 |
-
sub-00004 fcd M 1 6 suspicion 0 1 0 1 1 6 IIb IA IA 2 L FL test
|
| 75 |
-
sub-00010 fcd M 2 6 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R TL,OL train
|
| 76 |
-
sub-00001 fcd M 4 4 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 77 |
-
sub-00095 fcd M 1 8 suspicion 0 0 1 1 0 n/a n/a n/a n/a n/a L FL test
|
| 78 |
-
sub-00081 fcd M 1 5 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R FL train
|
| 79 |
-
sub-00034 fcd M 2 4 suspicion 1 1 1 1 0 n/a n/a n/a n/a n/a L FL test
|
| 80 |
-
sub-00080 fcd F 2 4 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 81 |
-
sub-00103 fcd F 4 5 suspicion 1 1 0 0 0 n/a n/a n/a n/a n/a L FL test
|
| 82 |
-
sub-00145 fcd F 3 4 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a L FL test
|
| 83 |
-
sub-00146 fcd F 1 5 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R FL train
|
| 84 |
-
sub-00126 fcd M 3 12 suspicion 1 0 0 1 1 12 IIb n/a IA 1 L FL train
|
| 85 |
-
sub-00062 fcd M 3 5 none 1 1 0 1 1 5 IIb IB IA 2 R FL test
|
| 86 |
-
sub-00100 fcd M 2 5 none 1 1 0 1 1 5 IIa IIIA IIIA 3 L FL test
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| 87 |
-
sub-00002 hc F n/a 12 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 88 |
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sub-00005 hc F n/a 12 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 89 |
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sub-00007 hc F n/a 12 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 90 |
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sub-00008 hc F n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 91 |
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sub-00011 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 92 |
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sub-00012 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 93 |
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sub-00013 hc F n/a 13 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 94 |
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sub-00017 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 95 |
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sub-00019 hc M n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 96 |
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sub-00021 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 97 |
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sub-00022 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 98 |
-
sub-00023 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 99 |
-
sub-00025 hc F n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 100 |
-
sub-00026 hc M n/a 13 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 101 |
-
sub-00028 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 102 |
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sub-00029 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 103 |
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sub-00030 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 104 |
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sub-00031 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00035 hc F n/a 8 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 106 |
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sub-00036 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00037 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 108 |
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sub-00039 hc F n/a 7 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 109 |
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sub-00041 hc M n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 110 |
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sub-00042 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00045 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00046 hc M n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00049 hc M n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 114 |
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sub-00051 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 115 |
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sub-00052 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 116 |
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sub-00054 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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| 117 |
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sub-00056 hc F n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00057 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00067 hc M n/a 7 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00069 hc M n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00070 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00075 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00079 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00082 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00084 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00085 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00086 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00088 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00093 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00096 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00104 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00106 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00110 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00111 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00113 hc M n/a 7 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00114 hc M n/a 7 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00119 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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sub-00155 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
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data/CHANGES
DELETED
|
@@ -1,14 +0,0 @@
|
|
| 1 |
-
1.0.6 2025-02-24
|
| 2 |
-
- updated participants.tsv to include split information (test set)
|
| 3 |
-
1.0.5 2023-07-09
|
| 4 |
-
- Revised title according to guidelines of Nature Scientific Data
|
| 5 |
-
1.0.4 2023-06-14
|
| 6 |
-
- additional participants info
|
| 7 |
-
1.0.3 2023-06-05
|
| 8 |
-
- revised the title and the author list
|
| 9 |
-
1.0.2 2023-06-05
|
| 10 |
-
- added participants info
|
| 11 |
-
1.0.1 2023-02-14
|
| 12 |
-
- Revised the title and ReadMe
|
| 13 |
-
1.0.0 2022-07-10
|
| 14 |
-
- initial upload of dataset
|
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data/README
DELETED
|
@@ -1,4 +0,0 @@
|
|
| 1 |
-
We present an MRI dataset of 85 people with epilepsy due to focal cortical dysplasia (FCD) type II and 85 healthy controls.
|
| 2 |
-
In epilepsy imaging, automated detection of FCDs plays a vital role because FCDs often escape conventional MRI analysis. Accurate recognition of FCDs is essential for affected patients. Surgical resection of the dysplastic cortex is associated with a high success rate, and a substantial number of patients subsequently become seizure-free.
|
| 3 |
-
We hope this dataset's publication will improve computer-aided FCD detection by enabling the validation of existing algorithms or aiding the development of new approaches.
|
| 4 |
-
Our dataset includes MRI data from T1 and FLAIR weighted images, manually labeled lesion masks, and selected clinical features.
|
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|
data/data_tests.ipynb
DELETED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/dataset_description.json
DELETED
|
@@ -1,38 +0,0 @@
|
|
| 1 |
-
{
|
| 2 |
-
"Name": "An open presurgery MRI dataset of people with epilepsy and focal cortical dysplasia type II",
|
| 3 |
-
"BIDSVersion": "1.6.0",
|
| 4 |
-
"Authors": [
|
| 5 |
-
"Fabiane Schuch",
|
| 6 |
-
"Lennart Walger",
|
| 7 |
-
"Matthias Schmitz",
|
| 8 |
-
"Bastian David",
|
| 9 |
-
"Tobias Bauer",
|
| 10 |
-
"Antonia Harms",
|
| 11 |
-
"Laura Fischbach",
|
| 12 |
-
"Freya Schulte",
|
| 13 |
-
"Martin Schidlowski",
|
| 14 |
-
"Johannes Reiter",
|
| 15 |
-
"Felix Bitzer",
|
| 16 |
-
"Randi von Wrede",
|
| 17 |
-
"Attila Rácz",
|
| 18 |
-
"Tobias Baumgartner",
|
| 19 |
-
"Valeri Borger",
|
| 20 |
-
"Matthias Schneider",
|
| 21 |
-
"Achim Flender",
|
| 22 |
-
"Albert Becker",
|
| 23 |
-
"Hartmut Vatter",
|
| 24 |
-
"Bernd Weber",
|
| 25 |
-
"Louisa Specht-Riemenschneider",
|
| 26 |
-
"Alexander Radbruch",
|
| 27 |
-
"Rainer Surges",
|
| 28 |
-
"Theodor Rüber"
|
| 29 |
-
],
|
| 30 |
-
"EthicsApprovals": [
|
| 31 |
-
"Ethics Committee of the University of Bonn"
|
| 32 |
-
],
|
| 33 |
-
"License": "CC0",
|
| 34 |
-
"PipelineDescription": {
|
| 35 |
-
"Name": "bonn_fcd"
|
| 36 |
-
},
|
| 37 |
-
"DatasetDOI": "doi:10.18112/openneuro.ds004199.v1.0.6"
|
| 38 |
-
}
|
|
|
|
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|
data/participants.json
DELETED
|
@@ -1,174 +0,0 @@
|
|
| 1 |
-
{
|
| 2 |
-
"group": {
|
| 3 |
-
"Description": "the group a person belongs to",
|
| 4 |
-
"Levels": {
|
| 5 |
-
"fcd": "person with epilepsy, diagnosed with an FCD",
|
| 6 |
-
"hc": "healthy control"
|
| 7 |
-
}
|
| 8 |
-
},
|
| 9 |
-
"sex": {
|
| 10 |
-
"Description": "sex of the participant",
|
| 11 |
-
"Levels": {
|
| 12 |
-
"M": "male",
|
| 13 |
-
"F": "female"
|
| 14 |
-
}
|
| 15 |
-
},
|
| 16 |
-
"age_epilepsyonset": {
|
| 17 |
-
"Description": "categorized age in years at the time of the first seizure",
|
| 18 |
-
"Levels":{
|
| 19 |
-
"1": "0-5 years",
|
| 20 |
-
"2": "6-10 years",
|
| 21 |
-
"3": "11-15 years",
|
| 22 |
-
"4": "16-20 years",
|
| 23 |
-
"5": "21-25 years",
|
| 24 |
-
"6": "26-30 years",
|
| 25 |
-
"7": "31-35 years",
|
| 26 |
-
"8": "36-40 years",
|
| 27 |
-
"9": "41-45 years",
|
| 28 |
-
"10": "46-50 years",
|
| 29 |
-
"11": "51-55 years",
|
| 30 |
-
"12": "56-60 years",
|
| 31 |
-
"13": "61-65 years"
|
| 32 |
-
}
|
| 33 |
-
},
|
| 34 |
-
"age_scan": {
|
| 35 |
-
"Description": "categorized age in years at the time of MRI",
|
| 36 |
-
"Levels":{
|
| 37 |
-
"1": "1-5 years",
|
| 38 |
-
"2": "6-10 years",
|
| 39 |
-
"3": "11-15 years",
|
| 40 |
-
"4": "16-20 years",
|
| 41 |
-
"5": "21-25 years",
|
| 42 |
-
"6": "26-30 years",
|
| 43 |
-
"7": "31-35 years",
|
| 44 |
-
"8": "36-40 years",
|
| 45 |
-
"9": "41-45 years",
|
| 46 |
-
"10": "46-50 years",
|
| 47 |
-
"11": "51-55 years",
|
| 48 |
-
"12": "56-60 years",
|
| 49 |
-
"13": "61-65 years"
|
| 50 |
-
}
|
| 51 |
-
},
|
| 52 |
-
"mri_diagnosis": {
|
| 53 |
-
"Description": "diagnosis made by neuroradiologists at the University Hospital Bonn at the time of presurgical assesment",
|
| 54 |
-
"Levels": {
|
| 55 |
-
"suspicion": "Images suggest an FCD type II.",
|
| 56 |
-
"none": "Images did not reveal any pathological changes.",
|
| 57 |
-
"other": "Described structural changes, bu no suspected FCD."
|
| 58 |
-
}
|
| 59 |
-
},
|
| 60 |
-
"map": {
|
| 61 |
-
"Description": "morphometric analysis performed",
|
| 62 |
-
"Levels": {
|
| 63 |
-
"1": "was performed",
|
| 64 |
-
"0": "was not performed"
|
| 65 |
-
}
|
| 66 |
-
},
|
| 67 |
-
"spect": {
|
| 68 |
-
"Description": "spect performed",
|
| 69 |
-
"Levels": {
|
| 70 |
-
"1": "was performed",
|
| 71 |
-
"0": "was not performed"
|
| 72 |
-
}
|
| 73 |
-
},
|
| 74 |
-
"pet": {
|
| 75 |
-
"Description": "pet performed",
|
| 76 |
-
"Levels": {
|
| 77 |
-
"1": "was performed",
|
| 78 |
-
"0": "was not performed"
|
| 79 |
-
}
|
| 80 |
-
},
|
| 81 |
-
"invasive_EEG": {
|
| 82 |
-
"Description": "invasive EEG diagnostic performed",
|
| 83 |
-
"Levels": {
|
| 84 |
-
"1": "was performed",
|
| 85 |
-
"0": "was not performed"
|
| 86 |
-
}
|
| 87 |
-
},
|
| 88 |
-
"op": {
|
| 89 |
-
"Description": "epilepsy surgery performed",
|
| 90 |
-
"Levels": {
|
| 91 |
-
"1": "was performed",
|
| 92 |
-
"0": "was not performed"
|
| 93 |
-
}
|
| 94 |
-
},
|
| 95 |
-
"age_op": {
|
| 96 |
-
"Description": "categorized age at the time of epilepsy surgery",
|
| 97 |
-
"Levels": {
|
| 98 |
-
"1": "1-5 years",
|
| 99 |
-
"2": "6-10 years",
|
| 100 |
-
"3": "11-15 years",
|
| 101 |
-
"4": "16-20 years",
|
| 102 |
-
"5": "21-25 years",
|
| 103 |
-
"6": "26-30 years",
|
| 104 |
-
"7": "31-35 years",
|
| 105 |
-
"8": "36-40 years",
|
| 106 |
-
"9": "41-45 years",
|
| 107 |
-
"10": "46-50 years",
|
| 108 |
-
"11": "51-55 years",
|
| 109 |
-
"12": "56-60 years",
|
| 110 |
-
"13": "61-65 years"
|
| 111 |
-
}
|
| 112 |
-
},
|
| 113 |
-
"histopathology": {
|
| 114 |
-
"Description": "histological classification according to the ILAE classification",
|
| 115 |
-
"Levels": {
|
| 116 |
-
"IIa": "Type IIa",
|
| 117 |
-
"IIb": "Type IIb"
|
| 118 |
-
}
|
| 119 |
-
},
|
| 120 |
-
"1year_outcome": {
|
| 121 |
-
"Description": "postoperative outcome 12 months after epilepsy surgery according to the Engel classification ",
|
| 122 |
-
"Levels": {
|
| 123 |
-
"IA": "Engel IA: Completely seizure free since surgery",
|
| 124 |
-
"IB": "Engel IB: Nondisabling simple partial seizures only since surgery",
|
| 125 |
-
"IIA": "Engel IIA: Initially free of disabling seizures but has rare seizures now",
|
| 126 |
-
"IIB": "Engel IIB: Rare disabling seizures since surgery",
|
| 127 |
-
"IIIA": "Engel IIIA: Worthwhile seizure reduction",
|
| 128 |
-
"IVB": "Engel IVB: No appreciable change"
|
| 129 |
-
}
|
| 130 |
-
},
|
| 131 |
-
"latest_outcome": {
|
| 132 |
-
"Description": "latest postoperative outcome after epilepsy surgery according to the Engel classification ",
|
| 133 |
-
"Levels": {
|
| 134 |
-
"IA": "Engel IA: Completely seizure free since surgery",
|
| 135 |
-
"IB": "Engel IB: Nondisabling simple partial seizures only since surgery",
|
| 136 |
-
"IC": "Engel IC: Some disabling seizures after surgery, but free of disabling seizures for at least 2 years",
|
| 137 |
-
"IIA": "Engel IIA: Initially free of disabling seizures but has rare seizures now",
|
| 138 |
-
"IIB": "Engel IIB: Rare disabling seizures since surgery",
|
| 139 |
-
"IIC": "Engel IIC: More than rare disabling seizures since surgery, but rare seizures for the last 2 years",
|
| 140 |
-
"IIIA": "Engel IIIA: Worthwhile seizure reduction",
|
| 141 |
-
"IVB": "Engel IVB: No appreciable change",
|
| 142 |
-
"IVC": "Engel IVC: Seizures worse"
|
| 143 |
-
}
|
| 144 |
-
},
|
| 145 |
-
"time_follow-up": {
|
| 146 |
-
"Description": "date of last follow-up in years after surgery",
|
| 147 |
-
"Levels": {
|
| 148 |
-
"1": "less than 1 year",
|
| 149 |
-
"2": "1-2 years",
|
| 150 |
-
"3": "3-4 years",
|
| 151 |
-
"4": "5-6 years",
|
| 152 |
-
"5": "7-8 years",
|
| 153 |
-
"6": "9-10 years",
|
| 154 |
-
"7": "11-12 years"
|
| 155 |
-
}
|
| 156 |
-
},
|
| 157 |
-
"hemisphere": {
|
| 158 |
-
"Description": "hemisphere affected by the FCD",
|
| 159 |
-
"Levels": {
|
| 160 |
-
"L": "left",
|
| 161 |
-
"R": "right"
|
| 162 |
-
}
|
| 163 |
-
},
|
| 164 |
-
"lobe": {
|
| 165 |
-
"Description": "lobe affected by the FCD",
|
| 166 |
-
"Levels": {
|
| 167 |
-
"FL": "frontal lobe",
|
| 168 |
-
"TL": "temporal lobe",
|
| 169 |
-
"PL": "parietal lobe",
|
| 170 |
-
"OL": "occipital lobe",
|
| 171 |
-
"IL": "insular lobe"
|
| 172 |
-
}
|
| 173 |
-
}
|
| 174 |
-
}
|
|
|
|
|
|
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data/participants.tsv
DELETED
|
@@ -1,171 +0,0 @@
|
|
| 1 |
-
participant_id group sex age_epilepsyonset age_scan mri_diagnosis map spect pet invasive_EEG op age_op histopathology 1year_outcome latest_outcome time_follow-up hemisphere lobe split
|
| 2 |
-
sub-00058 fcd M 1 4 suspicion 0 0 0 0 1 4 IIb IA IA 2 L FL train
|
| 3 |
-
sub-00043 fcd F 2 4 suspicion 1 0 0 0 1 4 IIa IA IA 3 R FL train
|
| 4 |
-
sub-00133 fcd F 3 7 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R TL train
|
| 5 |
-
sub-00120 fcd M 7 8 suspicion 1 0 1 0 1 8 IIb IA IA 7 L FL train
|
| 6 |
-
sub-00060 fcd F 2 13 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 7 |
-
sub-00047 fcd M 1 7 suspicion 1 0 0 1 1 7 IIa IVB IVB 2 L PL train
|
| 8 |
-
sub-00132 fcd M 1 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 9 |
-
sub-00059 fcd M 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 10 |
-
sub-00050 fcd M 5 9 suspicion 0 0 0 1 0 n/a n/a n/a n/a n/a L FL train
|
| 11 |
-
sub-00027 fcd M 8 8 suspicion 0 0 0 0 1 9 IIb IA IA 2 R PL train
|
| 12 |
-
sub-00116 fcd M 1 4 suspicion 1 1 0 1 1 4 IIa IA IA 2 R FL train
|
| 13 |
-
sub-00066 fcd F 2 8 none 1 1 1 1 1 8 IIb IA IA 5 L IL test
|
| 14 |
-
sub-00090 fcd M 1 5 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L PL train
|
| 15 |
-
sub-00063 fcd M 1 11 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R TL,PL train
|
| 16 |
-
sub-00048 fcd M 3 7 suspicion 1 0 0 1 1 7 IIb IA IA 2 L FL test
|
| 17 |
-
sub-00040 fcd F 1 6 suspicion 1 0 0 0 1 6 IIb IA IA 4 R OL train
|
| 18 |
-
sub-00064 fcd F 2 4 suspicion 1 0 0 1 1 4 IIa IA IIC 6 R PL test
|
| 19 |
-
sub-00098 fcd F 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L TL train
|
| 20 |
-
sub-00078 fcd F 3 9 suspicion 1 1 0 1 1 9 IIb IA IA 2 L FL train
|
| 21 |
-
sub-00061 fcd F 4 8 suspicion 1 0 0 1 1 8 IIb IIB IC 6 L PL test
|
| 22 |
-
sub-00092 fcd M 1 9 suspicion 1 0 0 1 1 9 IIb n/a IA 1 R PL test
|
| 23 |
-
sub-00087 fcd F 5 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 24 |
-
sub-00099 fcd F 3 7 suspicion 1 0 0 1 1 8 IIa IIA IIIA 5 L TL,OL test
|
| 25 |
-
sub-00032 fcd M 1 12 suspicion 1 0 0 1 1 12 IIb IIB IIIA 6 L PL test
|
| 26 |
-
sub-00089 fcd F 9 11 suspicion 1 1 0 1 1 12 IIa IVB IVB 2 L TL train
|
| 27 |
-
sub-00038 fcd M 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 28 |
-
sub-00121 fcd F 2 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L TL test
|
| 29 |
-
sub-00024 fcd M 2 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 30 |
-
sub-00033 fcd M 1 7 suspicion 1 0 0 0 1 7 IIb IA IA 2 R FL train
|
| 31 |
-
sub-00130 fcd M 1 3 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 32 |
-
sub-00141 fcd M 4 5 suspicion 1 0 0 1 1 5 IIb IA IA 4 R FL train
|
| 33 |
-
sub-00072 fcd F 1 4 suspicion 1 0 0 1 1 4 IIa IA IA 4 L FL train
|
| 34 |
-
sub-00016 fcd M 1 6 suspicion 1 0 0 0 1 6 IIb IA IA 2 R PL train
|
| 35 |
-
sub-00136 fcd M 2 6 suspicion 1 0 0 1 1 6 IIb IA IA 2 L FL test
|
| 36 |
-
sub-00097 fcd F 3 10 suspicion 1 1 0 1 1 10 IIb IA IA 2 R FL train
|
| 37 |
-
sub-00115 fcd F 1 6 suspicion 1 1 0 0 0 n/a n/a n/a n/a n/a L PL train
|
| 38 |
-
sub-00055 fcd M 2 5 suspicion 1 0 1 0 1 5 IIb IA IA 3 L PL train
|
| 39 |
-
sub-00018 fcd M 2 8 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 40 |
-
sub-00125 fcd F 1 4 suspicion 1 1 0 1 1 4 IIb IA IA 2 R FL test
|
| 41 |
-
sub-00091 fcd F 3 3 suspicion 1 0 0 0 1 3 IIa IA IA 2 L FL train
|
| 42 |
-
sub-00015 fcd F 2 6 suspicion 1 1 0 1 1 6 IIb IIB IVC 3 R FL train
|
| 43 |
-
sub-00134 fcd F 4 7 suspicion 1 1 0 1 1 7 IIb n/a n/a n/a L FL test
|
| 44 |
-
sub-00138 fcd M 2 4 suspicion 1 1 0 1 1 4 IIb IA IA 2 R PL train
|
| 45 |
-
sub-00006 fcd M 4 5 suspicion 1 0 1 1 1 5 IIa IA IA 6 L FL test
|
| 46 |
-
sub-00144 fcd M 2 5 suspicion 1 1 0 1 1 5 IIb IA IA 2 R FL test
|
| 47 |
-
sub-00044 fcd M 1 3 suspicion 1 0 0 1 1 3 IIa IA IIA 4 L FL train
|
| 48 |
-
sub-00076 fcd M 2 6 suspicion 1 1 1 1 1 6 IIa IA IIA 4 R IL train
|
| 49 |
-
sub-00112 fcd M 2 10 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 50 |
-
sub-00003 fcd M 1 11 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R PL train
|
| 51 |
-
sub-00139 fcd F 3 6 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L OL train
|
| 52 |
-
sub-00020 fcd M 1 3 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R PL test
|
| 53 |
-
sub-00140 fcd M 2 4 suspicion 0 0 0 0 1 4 IIa IA IA 5 L FL train
|
| 54 |
-
sub-00077 fcd F 1 5 suspicion 0 0 0 0 1 5 IIb n/a IVC 1 R PL train
|
| 55 |
-
sub-00109 fcd F 3 8 suspicion 0 1 0 0 1 8 IIb IA IA 3 R FL train
|
| 56 |
-
sub-00131 fcd F 1 5 suspicion 1 0 0 1 1 5 IIb IA IA 2 R FL train
|
| 57 |
-
sub-00142 fcd M 1 5 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L FL,PL test
|
| 58 |
-
sub-00053 fcd M 1 4 suspicion 0 1 0 0 1 4 IIa n/a IA 1 L FL train
|
| 59 |
-
sub-00014 fcd M 6 7 suspicion 0 0 0 0 1 7 IIb IA IA 2 R TL,OL train
|
| 60 |
-
sub-00107 fcd M 1 5 none 1 1 0 1 1 5 IIa IA IIIA 4 R FL test
|
| 61 |
-
sub-00105 fcd M 2 11 suspicion 0 0 0 1 0 n/a n/a n/a n/a n/a L FL train
|
| 62 |
-
sub-00101 fcd F 4 12 suspicion 1 0 0 1 1 12 IIb IA IA 2 L FL train
|
| 63 |
-
sub-00074 fcd F 2 4 other 1 1 1 1 1 4 IIb IA IA 7 L FL test
|
| 64 |
-
sub-00073 fcd F 1 4 suspicion 1 0 1 1 1 4 IIb IA IA 7 R TL,PL train
|
| 65 |
-
sub-00128 fcd F 2 10 suspicion 1 0 0 0 1 10 IIb IA IA 2 L PL test
|
| 66 |
-
sub-00068 fcd F 4 4 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 67 |
-
sub-00123 fcd F 2 3 suspicion 0 0 0 0 1 3 IIb IA IA 4 R FL train
|
| 68 |
-
sub-00108 fcd M 2 6 suspicion 1 1 0 1 1 6 IIb IA IA 3 R FL test
|
| 69 |
-
sub-00083 fcd M 6 6 none 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 70 |
-
sub-00009 fcd M 4 4 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R IL test
|
| 71 |
-
sub-00122 fcd M 1 4 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R TL train
|
| 72 |
-
sub-00065 fcd M 4 5 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 73 |
-
sub-00071 fcd F 3 5 other 0 0 0 0 1 5 IIa IIB IIB 3 L FL train
|
| 74 |
-
sub-00004 fcd M 1 6 suspicion 0 1 0 1 1 6 IIb IA IA 2 L FL test
|
| 75 |
-
sub-00010 fcd M 2 6 suspicion 0 0 0 0 0 n/a n/a n/a n/a n/a R TL,OL train
|
| 76 |
-
sub-00001 fcd M 4 4 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a R FL train
|
| 77 |
-
sub-00095 fcd M 1 8 suspicion 0 0 1 1 0 n/a n/a n/a n/a n/a L FL test
|
| 78 |
-
sub-00081 fcd M 1 5 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R FL train
|
| 79 |
-
sub-00034 fcd M 2 4 suspicion 1 1 1 1 0 n/a n/a n/a n/a n/a L FL test
|
| 80 |
-
sub-00080 fcd F 2 4 suspicion 1 0 0 0 0 n/a n/a n/a n/a n/a L FL train
|
| 81 |
-
sub-00103 fcd F 4 5 suspicion 1 1 0 0 0 n/a n/a n/a n/a n/a L FL test
|
| 82 |
-
sub-00145 fcd F 3 4 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a L FL test
|
| 83 |
-
sub-00146 fcd F 1 5 suspicion 1 0 1 0 0 n/a n/a n/a n/a n/a R FL train
|
| 84 |
-
sub-00126 fcd M 3 12 suspicion 1 0 0 1 1 12 IIb n/a IA 1 L FL train
|
| 85 |
-
sub-00062 fcd M 3 5 none 1 1 0 1 1 5 IIb IB IA 2 R FL test
|
| 86 |
-
sub-00100 fcd M 2 5 none 1 1 0 1 1 5 IIa IIIA IIIA 3 L FL test
|
| 87 |
-
sub-00002 hc F n/a 12 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 88 |
-
sub-00005 hc F n/a 12 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 89 |
-
sub-00007 hc F n/a 12 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 90 |
-
sub-00008 hc F n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 91 |
-
sub-00011 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 92 |
-
sub-00012 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 93 |
-
sub-00013 hc F n/a 13 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 94 |
-
sub-00017 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 95 |
-
sub-00019 hc M n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 96 |
-
sub-00021 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 97 |
-
sub-00022 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 98 |
-
sub-00023 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 99 |
-
sub-00025 hc F n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 100 |
-
sub-00026 hc M n/a 13 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 101 |
-
sub-00028 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 102 |
-
sub-00029 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 103 |
-
sub-00030 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 104 |
-
sub-00031 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 105 |
-
sub-00035 hc F n/a 8 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 106 |
-
sub-00036 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 107 |
-
sub-00037 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 108 |
-
sub-00039 hc F n/a 7 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 109 |
-
sub-00041 hc M n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 110 |
-
sub-00042 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 111 |
-
sub-00045 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 112 |
-
sub-00046 hc M n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 113 |
-
sub-00049 hc M n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 114 |
-
sub-00051 hc F n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 115 |
-
sub-00052 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 116 |
-
sub-00054 hc F n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 117 |
-
sub-00056 hc F n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 118 |
-
sub-00057 hc F n/a 10 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 119 |
-
sub-00067 hc M n/a 7 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 120 |
-
sub-00069 hc M n/a 11 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 121 |
-
sub-00070 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 122 |
-
sub-00075 hc M n/a 9 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 123 |
-
sub-00079 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 124 |
-
sub-00082 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 125 |
-
sub-00084 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 126 |
-
sub-00085 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 127 |
-
sub-00086 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 128 |
-
sub-00088 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 129 |
-
sub-00093 hc M n/a 6 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 130 |
-
sub-00094 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 131 |
-
sub-00096 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 132 |
-
sub-00102 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 133 |
-
sub-00104 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 134 |
-
sub-00106 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 135 |
-
sub-00110 hc F n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 136 |
-
sub-00111 hc M n/a 5 n/a n/a n/a n/a n/a 0 n/a n/a n/a n/a n/a n/a n/a train
|
| 137 |
-
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| 164 |
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data/sub-00001/anat/.ipynb_checkpoints/sub-00001_acq-iso08_T1w-checkpoint.json
DELETED
|
@@ -1,77 +0,0 @@
|
|
| 1 |
-
{
|
| 2 |
-
"Modality": "MR",
|
| 3 |
-
"MagneticFieldStrength": 3,
|
| 4 |
-
"ImagingFrequency": 123.209,
|
| 5 |
-
"Manufacturer": "Siemens",
|
| 6 |
-
"ManufacturersModelName": "TrioTim",
|
| 7 |
-
"InstitutionName": "Life u. Brain GmbH",
|
| 8 |
-
"InstitutionalDepartmentName": "Department",
|
| 9 |
-
"InstitutionAddress": "Sigmund-Freund-Strasse 25,Bonn,Koeln,DE,53127",
|
| 10 |
-
"DeviceSerialNumber": "35083",
|
| 11 |
-
"StationName": "MRC35083",
|
| 12 |
-
"PatientPosition": "HFS",
|
| 13 |
-
"ProcedureStepDescription": "Struktur_3T_temp",
|
| 14 |
-
"SoftwareVersions": "syngo MR B17",
|
| 15 |
-
"MRAcquisitionType": "3D",
|
| 16 |
-
"SeriesDescription": "t1_mpr_32ch_iso_0.8",
|
| 17 |
-
"ProtocolName": "t1_mpr_32ch_iso_0.8",
|
| 18 |
-
"ScanningSequence": "GR\\IR",
|
| 19 |
-
"SequenceVariant": "SP\\MP\\OSP",
|
| 20 |
-
"ScanOptions": "IR",
|
| 21 |
-
"SequenceName": "*tfl3d1_ns",
|
| 22 |
-
"ImageType": [
|
| 23 |
-
"ORIGINAL",
|
| 24 |
-
"PRIMARY",
|
| 25 |
-
"M",
|
| 26 |
-
"ND",
|
| 27 |
-
"NORM"
|
| 28 |
-
],
|
| 29 |
-
"SeriesNumber": 3,
|
| 30 |
-
"AcquisitionTime": "10:45:59.252500",
|
| 31 |
-
"AcquisitionNumber": 1,
|
| 32 |
-
"SliceThickness": 0.8,
|
| 33 |
-
"SAR": 0.177352,
|
| 34 |
-
"EchoTime": 0.00254,
|
| 35 |
-
"RepetitionTime": 1.66,
|
| 36 |
-
"InversionTime": 0.85,
|
| 37 |
-
"FlipAngle": 9,
|
| 38 |
-
"PartialFourier": 1,
|
| 39 |
-
"BaseResolution": 320,
|
| 40 |
-
"ShimSetting": [
|
| 41 |
-
12712,
|
| 42 |
-
-26763,
|
| 43 |
-
11663,
|
| 44 |
-
-302,
|
| 45 |
-
242,
|
| 46 |
-
-268,
|
| 47 |
-
-374,
|
| 48 |
-
174
|
| 49 |
-
],
|
| 50 |
-
"TxRefAmp": 328.556,
|
| 51 |
-
"PhaseResolution": 1,
|
| 52 |
-
"PhaseOversampling": 0.4,
|
| 53 |
-
"ReceiveCoilName": "32Ch_Head",
|
| 54 |
-
"CoilString": "C:HEA;HEP",
|
| 55 |
-
"PulseSequenceDetails": "%SiemensSeq%\\tfl",
|
| 56 |
-
"RefLinesPE": 24,
|
| 57 |
-
"PercentPhaseFOV": 100,
|
| 58 |
-
"PercentSampling": 100,
|
| 59 |
-
"PhaseEncodingSteps": 447,
|
| 60 |
-
"AcquisitionMatrixPE": 320,
|
| 61 |
-
"ReconMatrixPE": 320,
|
| 62 |
-
"ParallelReductionFactorInPlane": 2,
|
| 63 |
-
"PixelBandwidth": 180,
|
| 64 |
-
"DwellTime": 8.7e-06,
|
| 65 |
-
"ImageOrientationPatientDICOM": [
|
| 66 |
-
0.0351289,
|
| 67 |
-
0.993663,
|
| 68 |
-
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|
| 69 |
-
-0.0682826,
|
| 70 |
-
-0.104202,
|
| 71 |
-
-0.992209
|
| 72 |
-
],
|
| 73 |
-
"InPlanePhaseEncodingDirectionDICOM": "ROW",
|
| 74 |
-
"ConversionSoftware": "dcm2niix",
|
| 75 |
-
"ConversionSoftwareVersion": "v1.0.20201102",
|
| 76 |
-
"Dcm2bidsVersion": "3.0.2"
|
| 77 |
-
}
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|
data/sub-00001/anat/sub-00001_acq-T2sel_FLAIR.json
DELETED
|
@@ -1,78 +0,0 @@
|
|
| 1 |
-
{
|
| 2 |
-
"Modality": "MR",
|
| 3 |
-
"MagneticFieldStrength": 3,
|
| 4 |
-
"ImagingFrequency": 123.209,
|
| 5 |
-
"Manufacturer": "Siemens",
|
| 6 |
-
"ManufacturersModelName": "TrioTim",
|
| 7 |
-
"InstitutionName": "Life u. Brain GmbH",
|
| 8 |
-
"InstitutionalDepartmentName": "Department",
|
| 9 |
-
"InstitutionAddress": "Sigmund-Freund-Strasse 25,Bonn,Koeln,DE,53127",
|
| 10 |
-
"DeviceSerialNumber": "35083",
|
| 11 |
-
"StationName": "MRC35083",
|
| 12 |
-
"PatientPosition": "HFS",
|
| 13 |
-
"ProcedureStepDescription": "Struktur_3T_temp",
|
| 14 |
-
"SoftwareVersions": "syngo MR B17",
|
| 15 |
-
"MRAcquisitionType": "3D",
|
| 16 |
-
"SeriesDescription": "flair_32ch_iso_1.0_T2sel",
|
| 17 |
-
"ProtocolName": "flair_32ch_iso_1.0_T2sel",
|
| 18 |
-
"ScanningSequence": "SE\\IR",
|
| 19 |
-
"SequenceVariant": "SK\\SP\\MP",
|
| 20 |
-
"ScanOptions": "IR\\PFP\\SAT1",
|
| 21 |
-
"SequenceName": "*spcir3d1_286ns",
|
| 22 |
-
"ImageType": [
|
| 23 |
-
"ORIGINAL",
|
| 24 |
-
"PRIMARY",
|
| 25 |
-
"M",
|
| 26 |
-
"ND",
|
| 27 |
-
"NORM"
|
| 28 |
-
],
|
| 29 |
-
"SeriesNumber": 4,
|
| 30 |
-
"AcquisitionTime": "10:53:9.565000",
|
| 31 |
-
"AcquisitionNumber": 1,
|
| 32 |
-
"SliceThickness": 1,
|
| 33 |
-
"SAR": 0.313782,
|
| 34 |
-
"EchoTime": 0.388,
|
| 35 |
-
"RepetitionTime": 5,
|
| 36 |
-
"InversionTime": 1.8,
|
| 37 |
-
"FlipAngle": 120,
|
| 38 |
-
"PartialFourier": 1,
|
| 39 |
-
"BaseResolution": 256,
|
| 40 |
-
"ShimSetting": [
|
| 41 |
-
12700,
|
| 42 |
-
-26832,
|
| 43 |
-
12053,
|
| 44 |
-
212,
|
| 45 |
-
311,
|
| 46 |
-
-601,
|
| 47 |
-
-238,
|
| 48 |
-
258
|
| 49 |
-
],
|
| 50 |
-
"TxRefAmp": 328.556,
|
| 51 |
-
"PhaseResolution": 1.02344,
|
| 52 |
-
"ReceiveCoilName": "32Ch_Head",
|
| 53 |
-
"CoilString": "C:HEA;HEP",
|
| 54 |
-
"PulseSequenceDetails": "%SiemensSeq%\\tse_vfl",
|
| 55 |
-
"RefLinesPE": 24,
|
| 56 |
-
"PercentPhaseFOV": 100,
|
| 57 |
-
"PercentSampling": 102.344,
|
| 58 |
-
"EchoTrainLength": 143,
|
| 59 |
-
"PhaseEncodingSteps": 236,
|
| 60 |
-
"AcquisitionMatrixPE": 262,
|
| 61 |
-
"ReconMatrixPE": 256,
|
| 62 |
-
"ParallelReductionFactorInPlane": 2,
|
| 63 |
-
"PixelBandwidth": 781,
|
| 64 |
-
"DwellTime": 2.5e-06,
|
| 65 |
-
"PhaseEncodingDirection": "i",
|
| 66 |
-
"ImageOrientationPatientDICOM": [
|
| 67 |
-
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|
| 68 |
-
0.993663,
|
| 69 |
-
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|
| 70 |
-
-0.0682826,
|
| 71 |
-
-0.104202,
|
| 72 |
-
-0.992209
|
| 73 |
-
],
|
| 74 |
-
"InPlanePhaseEncodingDirectionDICOM": "ROW",
|
| 75 |
-
"ConversionSoftware": "dcm2niix",
|
| 76 |
-
"ConversionSoftwareVersion": "v1.0.20201102",
|
| 77 |
-
"Dcm2bidsVersion": "3.0.2"
|
| 78 |
-
}
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DELETED
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| 1 |
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data/sub-00002/anat/sub-00002_acq-T2sel_FLAIR.json
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DELETED
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DELETED
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data/sub-00008/anat/sub-00008_acq-T2sel_FLAIR.nii.gz
DELETED
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data/sub-00008/anat/sub-00008_acq-iso08_T1w.json
DELETED
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@@ -1,77 +0,0 @@
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| 1 |
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{
|
| 2 |
-
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|
| 3 |
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| 4 |
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| 5 |
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| 10 |
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| 11 |
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| 12 |
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| 13 |
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|
| 14 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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|
| 24 |
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| 25 |
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| 26 |
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|
| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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| 49 |
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|
| 52 |
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|
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| 56 |
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|
| 57 |
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