Commit History

  1. Rebuild tabula_muris_tissue: 11 SS2 vs 10X tissue variants (BatchBench)

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  2. Remove stale Tabula file tabula_muris_tissue_panel_small_shared_tissue.rds

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  3. Remove stale Tabula file tabula_muris_tissue_panel_small_shared_tissue.h5ad

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  4. Remove stale Tabula file tabula_muris_tissue_panel_mid_shared_tissue.rds

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  5. Remove stale Tabula file tabula_muris_tissue_panel_mid_shared_tissue.h5ad

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  6. Remove stale Tabula file tabula_muris_tissue_panel_large_shared_tissue.rds

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  7. Remove stale Tabula file tabula_muris_tissue_panel_large_shared_tissue.h5ad

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  8. Add Batch_correction stepC family tabula_muris_tissue

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  9. Add Batch_correction stepC family scmix_single_cell

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  10. Add Batch_correction stepC family scib_splatter_sim

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  11. Add Batch_correction stepC family scib_mouse_brain

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  12. Add Batch_correction stepC family scib_immune

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  13. Add Batch_correction stepC family pbmc_10x_3p_5p

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  14. Add Batch_correction stepC family pancreas_multi

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  15. Add Batch_correction stepC family mouse_retina_xlab

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  16. Add Batch_correction stepC family mouse_hspc_xtech

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  17. Add Batch_correction stepC family lung_vieira

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  18. Add Batch_correction stepC family liver_multi_donor

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  19. Add Batch_correction stepC family klein_mesc_indrop

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  20. Add Batch_correction stepC family htn_splatter_deg

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  21. Add Batch_correction stepC family hlca_pairwise

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  22. Add Batch_correction stepC family cell_line_293t_jurkat

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  23. probe upload path for Batch_correction

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  24. Add Tabula Muris 2018 Figshare raw (FACS+droplet) for Batch_correction tabula_muris_tissue rebuild

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  25. Upload docs/vendor/cache/raw/bundle_a/Spatial_deconvolution/Liver_case_study/liver_case_invivo_reference.h5ad with huggingface_hub

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  26. Upload docs/vendor/cache/raw/bundle_a/Spatial_deconvolution/Liver_case_study/liver_case_combined_reference.h5ad with huggingface_hub

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  27. Upload docs/vendor/cache/raw/bundle_a/Spatial_deconvolution/Breast_cancer_Xenium/breast_xenium_reference.h5ad with huggingface_hub

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  28. Upload docs/vendor/cache/raw/bundle_a/Spatial_3D_reconstruction/openst_mln/openst_mln_mln_19slice.rds with huggingface_hub

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  29. Upload docs/vendor/cache/raw/bundle_a/Spatial_3D_reconstruction/openst_mln/openst_mln_mln_19slice.h5ad with huggingface_hub

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  30. Upload docs/vendor/cache/raw/bundle_a/RNA_decontamination/synth_contam/synth_contam_scdesign2_ambient_high.ambient_mask.npz with huggingface_hub

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  31. Upload docs/vendor/cache/raw/bundle_a/RNA_decontamination/ext_pfc_snrna_herring/ext_pfc_snrna_herring_RL2129_3y.h5ad with huggingface_hub

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  32. Upload docs/vendor/cache/raw/bundle_a/Cross_modal_protein_prediction/tuberculosis_memory_t_cell_citeseq/tuberculosis_memory_t_cell_citeseq_dataset20_full.rds with huggingface_hub

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  33. Upload docs/vendor/cache/raw/bundle_a/Cross_modal_protein_prediction/tuberculosis_memory_t_cell_citeseq/tuberculosis_memory_t_cell_citeseq_dataset20_full.h5ad with huggingface_hub

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  34. Upload docs/vendor/cache/raw/bundle_a/Cross_modal_protein_prediction/symsim_simulated_rna_adt/symsim_simulated_rna_adt_rna_adt_atac_reduced.h5ad with huggingface_hub

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