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0000000000000000000000000000000000000000..5691c0140a9cc69adabc8d5fe28ab01830745cbf --- /dev/null +++ b/015/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "015", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT1", + "pN_stage": "pN0", + "grading": "hpv_association_p16", + "hpv_association_p16": "positive", + "number_of_positive_lymph_nodes": 0.0, + "number_of_resected_lymph_nodes": 47, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "Ris0", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 1.0 +} \ No newline at end of file diff --git a/015/surgery_description.txt b/015/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff 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+ "Positive %": 11.69, + "Num Positive per mm^2": 999.74 + } +} \ No newline at end of file diff --git a/016/TumorCenter_CD3_block11_x6_y7_patient016_1.json b/016/TumorCenter_CD3_block11_x6_y7_patient016_1.json new file mode 100644 index 0000000000000000000000000000000000000000..363d88a0bba40a56aced26765ac00703a5f1db09 --- /dev/null +++ b/016/TumorCenter_CD3_block11_x6_y7_patient016_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 21525.5, + "Centroid Y µm": 17669.7, + "Num Detections": 14942, + "Num Negative": 13730, + "Num Positive": 1212, + "Positive %": 8.111, + "Num Positive per mm^2": 629.92 + } +} \ No newline at end of file diff --git a/016/TumorCenter_CD8_block11_x5_y7_patient016_0.json b/016/TumorCenter_CD8_block11_x5_y7_patient016_0.json new file mode 100644 index 0000000000000000000000000000000000000000..f91de65f82e2f7e505cdd6e1b0c8fd090ce699a1 --- /dev/null +++ b/016/TumorCenter_CD8_block11_x5_y7_patient016_0.json @@ -0,0 +1,11 @@ +{ + 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--git a/016/icd_codes.txt b/016/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/016/ops_codes.txt b/016/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/016/patient_clinical_data.json b/016/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..f5903c31a82e6209f4661bc1250022a79bd97195 --- /dev/null +++ b/016/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2011, + "age_at_initial_diagnosis": 52, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": null, + "survival_status": "deceased", + "survival_status_with_cause": "deceased tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 19, + "adjuvant_treatment_intent": "curative", + 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"Positive %": 11.99, + "Num Positive per mm^2": 1021.9 + } +} \ No newline at end of file diff --git a/017/TumorCenter_CD8_block14_x5_y2_patient017_0.json b/017/TumorCenter_CD8_block14_x5_y2_patient017_0.json new file mode 100644 index 0000000000000000000000000000000000000000..8f7401224ed1810bb34047c5fa498dacb54a3754 --- /dev/null +++ b/017/TumorCenter_CD8_block14_x5_y2_patient017_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15941.6, + "Centroid Y µm": 5871.9, + "Num Detections": 20052, + "Num Negative": 19636, + "Num Positive": 416, + "Positive %": 2.075, + "Num Positive per mm^2": 176.09 + } +} \ No newline at end of file diff --git a/017/TumorCenter_CD8_block14_x6_y2_patient017_1.json b/017/TumorCenter_CD8_block14_x6_y2_patient017_1.json new file mode 100644 index 0000000000000000000000000000000000000000..b6b08ef681243dd496f09dd759149b2fdd424c69 --- /dev/null +++ b/017/TumorCenter_CD8_block14_x6_y2_patient017_1.json @@ -0,0 +1,11 @@ +{ + 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1340, + "Positive %": 8.004, + "Num Positive per mm^2": 608.02 + } +} \ No newline at end of file diff --git a/018/InvasionFront_CD8_block16_x5_y3_patient018_0.json b/018/InvasionFront_CD8_block16_x5_y3_patient018_0.json new file mode 100644 index 0000000000000000000000000000000000000000..87088a7a5168fdbb54b85ea45227528d1a8608a3 --- /dev/null +++ b/018/InvasionFront_CD8_block16_x5_y3_patient018_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16233.3, + "Centroid Y µm": 7674.7, + "Num Detections": 17747, + "Num Negative": 17601, + "Num Positive": 146, + "Positive %": 0.8227, + "Num Positive per mm^2": 66.76 + } +} \ No newline at end of file diff --git a/018/InvasionFront_CD8_block16_x6_y3_patient018_1.json b/018/InvasionFront_CD8_block16_x6_y3_patient018_1.json new file mode 100644 index 0000000000000000000000000000000000000000..a08d8f3a70283e93cd84ee40a8560982e18fdd7a --- /dev/null +++ b/018/InvasionFront_CD8_block16_x6_y3_patient018_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18727.8, + "Centroid Y µm": 7740.1, + "Num Detections": 17033, + "Num Negative": 16474, + "Num Positive": 559, + "Positive %": 3.282, + "Num Positive per mm^2": 253.69 + } +} \ No newline at end of file diff --git a/018/TumorCenter_CD3_block16_x5_y3_patient018_0.json b/018/TumorCenter_CD3_block16_x5_y3_patient018_0.json new file mode 100644 index 0000000000000000000000000000000000000000..1e85415125ea7b184471c29b0ed24a08f2c4bec1 --- /dev/null +++ b/018/TumorCenter_CD3_block16_x5_y3_patient018_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17165.9, + "Centroid Y µm": 7945.8, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/018/TumorCenter_CD3_block16_x6_y3_patient018_1.json b/018/TumorCenter_CD3_block16_x6_y3_patient018_1.json new file mode 100644 index 0000000000000000000000000000000000000000..3efc570e5328397e05775e352d75bda04027a5c8 --- /dev/null +++ b/018/TumorCenter_CD3_block16_x6_y3_patient018_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19939.4, + "Centroid Y µm": 8070.7, + "Num Detections": 4002, + "Num Negative": 3898, + "Num Positive": 104, + "Positive %": 2.599, + "Num Positive per mm^2": 130.82 + } +} \ No newline at end of file diff --git a/018/TumorCenter_CD8_block16_x5_y3_patient018_0.json b/018/TumorCenter_CD8_block16_x5_y3_patient018_0.json new file mode 100644 index 0000000000000000000000000000000000000000..6bfb76251b769294af8eeca7feb3363e00037a20 --- /dev/null +++ b/018/TumorCenter_CD8_block16_x5_y3_patient018_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16091.5, + "Centroid Y µm": 7695.9, + "Num Detections": 7284, + "Num Negative": 7243, + "Num Positive": 41, + "Positive %": 0.5629, + "Num Positive per mm^2": 42.46 + } +} \ No newline at end of file diff --git a/018/TumorCenter_CD8_block16_x6_y3_patient018_1.json b/018/TumorCenter_CD8_block16_x6_y3_patient018_1.json new file mode 100644 index 0000000000000000000000000000000000000000..bcad2434fc2ac9ff9cdd22f40a8813dd24cde351 --- /dev/null +++ b/018/TumorCenter_CD8_block16_x6_y3_patient018_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18740.1, + "Centroid Y µm": 7695.9, + "Num Detections": 13885, + "Num Negative": 13867, + "Num Positive": 18, + "Positive %": 0.1296, + "Num Positive per mm^2": 8.767 + } +} \ No newline at end of file diff --git a/018/history_text.txt b/018/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/018/icd_codes.txt b/018/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/018/ops_codes.txt b/018/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/018/patient_clinical_data.json b/018/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..cfcaf18443efcf04b1e610143603b71e974a365e --- /dev/null +++ b/018/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 36, + "sex": "female", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 12, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/018/patient_pathological_data.json b/018/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..80da1d2ff972eca17024d83975f2785993df4b39 --- /dev/null +++ b/018/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "018", + "primary_tumor_site": "Oral_Cavity", + "pT_stage": "pT2", + "pN_stage": "pN2b", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 2.0, + "number_of_resected_lymph_nodes": 79, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "yes", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "1.1", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 14.0 +} \ No newline at end of file diff --git a/018/surgery_description.txt b/018/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/018/surgery_report.txt b/018/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/019/InvasionFront_CD3_block21_x3_y10_patient019_0.json b/019/InvasionFront_CD3_block21_x3_y10_patient019_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5a955591220c5cd5377b453c6c4628a092cb7900 --- /dev/null +++ b/019/InvasionFront_CD3_block21_x3_y10_patient019_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12793.2, + "Centroid Y µm": 35756.1, + "Num Detections": 21581, + "Num Negative": 21072, + "Num Positive": 509, + "Positive %": 2.359, + "Num Positive per mm^2": 228.55 + } +} \ No newline at end of file diff --git a/019/InvasionFront_CD3_block21_x4_y10_patient019_1.json b/019/InvasionFront_CD3_block21_x4_y10_patient019_1.json new file mode 100644 index 0000000000000000000000000000000000000000..9898a105bf1547938446dff257b0973d53e83d91 --- /dev/null +++ b/019/InvasionFront_CD3_block21_x4_y10_patient019_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15816.6, + "Centroid Y µm": 35881.0, + "Num Detections": 15719, + "Num Negative": 14773, + "Num Positive": 946, + "Positive %": 6.018, + "Num Positive per mm^2": 542.8 + } +} \ No newline at end of file diff --git a/019/InvasionFront_CD8_block21_x3_y10_patient019_0.json b/019/InvasionFront_CD8_block21_x3_y10_patient019_0.json new file mode 100644 index 0000000000000000000000000000000000000000..333cff070386e546686cbbb6c6c25ed3bb0d79be --- /dev/null +++ b/019/InvasionFront_CD8_block21_x3_y10_patient019_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11019.2, + "Centroid Y µm": 24661.9, + "Num Detections": 21461, + "Num Negative": 21217, + "Num Positive": 244, + "Positive %": 1.137, + "Num Positive per mm^2": 113.49 + } +} \ No newline at end of file diff --git a/019/InvasionFront_CD8_block21_x4_y10_patient019_1.json b/019/InvasionFront_CD8_block21_x4_y10_patient019_1.json new file mode 100644 index 0000000000000000000000000000000000000000..8acd7e4a3c0c469274bad3a3f387d700ecedeff5 --- /dev/null +++ b/019/InvasionFront_CD8_block21_x4_y10_patient019_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13717.7, + "Centroid Y µm": 24562.0, + "Num Detections": 16979, + "Num Negative": 16375, + "Num Positive": 604, + "Positive %": 3.557, + "Num Positive per mm^2": 343.96 + } +} \ No newline at end of file diff --git a/019/TumorCenter_CD3_block21_x3_y10_patient019_0.json b/019/TumorCenter_CD3_block21_x3_y10_patient019_0.json new file mode 100644 index 0000000000000000000000000000000000000000..a8a79d31aea43362a632464949324bbb049a5145 --- /dev/null +++ b/019/TumorCenter_CD3_block21_x3_y10_patient019_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 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0000000000000000000000000000000000000000..3d09edc32da5ccda000f028015f95bd01bfe1ff6 --- /dev/null +++ b/019/TumorCenter_CD8_block21_x3_y10_patient019_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12818.2, + "Centroid Y µm": 39903.9, + "Num Detections": 15491, + "Num Negative": 14499, + "Num Positive": 992, + "Positive %": 6.404, + "Num Positive per mm^2": 544.48 + } +} \ No newline at end of file diff --git a/019/TumorCenter_CD8_block21_x4_y10_patient019_1.json b/019/TumorCenter_CD8_block21_x4_y10_patient019_1.json new file mode 100644 index 0000000000000000000000000000000000000000..8d599bd43a88363698ad6f00daffdbebc434dffa --- /dev/null +++ b/019/TumorCenter_CD8_block21_x4_y10_patient019_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15391.9, + "Centroid Y µm": 39878.9, + "Num Detections": 21097, + "Num Negative": 20277, + "Num Positive": 820, + "Positive %": 3.887, + "Num Positive per mm^2": 372.24 + } +} \ No newline at end of file diff --git a/019/history_text.txt b/019/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/019/icd_codes.txt b/019/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/019/ops_codes.txt b/019/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/019/patient_clinical_data.json b/019/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..d972c75a445120807ae144fd714babaf151c825c --- /dev/null +++ b/019/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2011, + "age_at_initial_diagnosis": 77, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased not tumor 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+ "perineural_invasion_Pn": "yes", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": null, + "histologic_type": "SCC_Conventional-NonKeratinizing", + "infiltration_depth_in_mm": 13.0 +} \ No newline at end of file diff --git a/019/surgery_description.txt b/019/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/019/surgery_report.txt b/019/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/020/InvasionFront_CD3_block8_x5_y9_patient020_0.json b/020/InvasionFront_CD3_block8_x5_y9_patient020_0.json new file mode 100644 index 0000000000000000000000000000000000000000..7dc0aa8ae2c59ef03e7c969937c7a8597b2bf787 --- /dev/null +++ b/020/InvasionFront_CD3_block8_x5_y9_patient020_0.json @@ -0,0 +1,11 @@ +{ + 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0000000000000000000000000000000000000000..7c9808599d8b86c35ca14e909223dc76d71bb608 --- /dev/null +++ b/020/InvasionFront_CD8_block8_x5_y9_patient020_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16216.4, + "Centroid Y µm": 23362.6, + "Num Detections": 21556, + "Num Negative": 17526, + "Num Positive": 4030, + "Positive %": 18.7, + "Num Positive per mm^2": 1764.5 + } +} \ No newline at end of file diff --git a/020/InvasionFront_CD8_block8_x6_y9_patient020_1.json b/020/InvasionFront_CD8_block8_x6_y9_patient020_1.json new file mode 100644 index 0000000000000000000000000000000000000000..c7a9f5728e7ede93aeb441857077472f4c86f31c --- /dev/null +++ b/020/InvasionFront_CD8_block8_x6_y9_patient020_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18865.0, + "Centroid Y µm": 23637.5, + "Num Detections": 24205, + "Num Negative": 17355, + "Num Positive": 6850, + "Positive %": 28.3, + "Num Positive per mm^2": 2807.5 + } +} \ No newline at end of file diff --git a/020/TumorCenter_CD3_block8_x5_y9_patient020_0.json b/020/TumorCenter_CD3_block8_x5_y9_patient020_0.json new file mode 100644 index 0000000000000000000000000000000000000000..20dfcdb3e5b1b660a9aa2446e579a74e7af827b2 --- /dev/null +++ b/020/TumorCenter_CD3_block8_x5_y9_patient020_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17965.5, + "Centroid Y µm": 23037.8, + "Num Detections": 24162, + "Num Negative": 20418, + "Num Positive": 3744, + "Positive %": 15.5, + "Num Positive per mm^2": 1499.8 + } +} \ No newline at end of file diff --git a/020/TumorCenter_CD3_block8_x6_y9_patient020_1.json b/020/TumorCenter_CD3_block8_x6_y9_patient020_1.json new file mode 100644 index 0000000000000000000000000000000000000000..af257e73402273b5adf3026bd135f89b49978578 --- /dev/null +++ b/020/TumorCenter_CD3_block8_x6_y9_patient020_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 20439.2, + "Centroid Y µm": 22738.0, + "Num Detections": 22760, + "Num Negative": 12414, + "Num Positive": 10346, + "Positive %": 45.46, + "Num Positive per mm^2": 4127.6 + } +} \ No newline at end of file diff --git a/020/TumorCenter_CD8_block8_x5_y9_patient020_0.json b/020/TumorCenter_CD8_block8_x5_y9_patient020_0.json new file mode 100644 index 0000000000000000000000000000000000000000..ed2add0215a580a9f15c0c8ffef488e1f9119de8 --- /dev/null +++ b/020/TumorCenter_CD8_block8_x5_y9_patient020_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17390.8, + "Centroid Y µm": 22688.0, + "Num Detections": 25819, + "Num Negative": 24876, + "Num Positive": 943, + "Positive %": 3.652, + "Num Positive per mm^2": 387.25 + } +} \ No newline at end of file diff --git a/020/TumorCenter_CD8_block8_x6_y9_patient020_1.json b/020/TumorCenter_CD8_block8_x6_y9_patient020_1.json new file mode 100644 index 0000000000000000000000000000000000000000..f7a41d4799f7c6ea052dfa22d04b27e574c73b01 --- /dev/null +++ b/020/TumorCenter_CD8_block8_x6_y9_patient020_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19914.5, + "Centroid Y µm": 22513.1, + "Num Detections": 23508, + "Num Negative": 15004, + "Num Positive": 8504, + "Positive %": 36.17, + "Num Positive per mm^2": 3458.5 + } +} \ No newline at end of file diff --git a/020/history_text.txt b/020/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/020/icd_codes.txt b/020/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/020/ops_codes.txt b/020/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/020/patient_clinical_data.json b/020/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..65ab2a7b44b9fe1cfdd03146c38ccf95dda9d3a9 --- /dev/null +++ b/020/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2014, + "age_at_initial_diagnosis": 47, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 15, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "Radiattio + fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/020/patient_pathological_data.json b/020/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..6ef352d50b9b4d73c8e372e42503ec68df265622 --- /dev/null +++ b/020/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "020", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT2", + "pN_stage": "pN2", + "grading": "hpv_association_p16", + "hpv_association_p16": "positive", + "number_of_positive_lymph_nodes": 1.0, + "number_of_resected_lymph_nodes": 54, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Basaloid", + "infiltration_depth_in_mm": 12.0 +} \ No newline at end of file diff --git a/020/surgery_description.txt b/020/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/020/surgery_report.txt b/020/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/021/InvasionFront_CD3_block11_x3_y9_patient021_0.json b/021/InvasionFront_CD3_block11_x3_y9_patient021_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5d568effb00d091971ef37b0cc4fd7857450da4a --- /dev/null +++ b/021/InvasionFront_CD3_block11_x3_y9_patient021_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 10769.3, + "Centroid Y µm": 21663.5, + "Num Detections": 21789, + "Num Negative": 21481, + "Num Positive": 308, + "Positive %": 1.414, + "Num Positive per mm^2": 130.49 + } +} \ No newline at end of file diff --git a/021/InvasionFront_CD3_block11_x4_y9_patient021_1.json b/021/InvasionFront_CD3_block11_x4_y9_patient021_1.json new file mode 100644 index 0000000000000000000000000000000000000000..5dc139566dbdda5025b93392961fb7c7ae339c24 --- /dev/null +++ b/021/InvasionFront_CD3_block11_x4_y9_patient021_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13367.9, + "Centroid Y µm": 21588.6, + "Num Detections": 20215, + "Num Negative": 19397, + "Num Positive": 818, + "Positive %": 4.047, + "Num Positive per mm^2": 358.29 + } +} \ No newline at end of file diff --git a/021/InvasionFront_CD8_block11_x3_y9_patient021_0.json b/021/InvasionFront_CD8_block11_x3_y9_patient021_0.json new file mode 100644 index 0000000000000000000000000000000000000000..9bee81501f695ef7dabd01b121b459a085a1dd51 --- /dev/null +++ b/021/InvasionFront_CD8_block11_x3_y9_patient021_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13631.3, + "Centroid Y µm": 32861.6, + "Num Detections": 18870, + "Num Negative": 18657, + "Num Positive": 213, + "Positive %": 1.129, + "Num Positive per mm^2": 97.34 + } +} \ No newline at end of file diff --git a/021/InvasionFront_CD8_block11_x4_y9_patient021_1.json 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"Positive %": 0.5817, + "Num Positive per mm^2": 49.42 + } +} \ No newline at end of file diff --git a/021/TumorCenter_CD3_block11_x4_y9_patient021_1.json b/021/TumorCenter_CD3_block11_x4_y9_patient021_1.json new file mode 100644 index 0000000000000000000000000000000000000000..085da475900aeaf9b38417a99044fbbedb0a6790 --- /dev/null +++ b/021/TumorCenter_CD3_block11_x4_y9_patient021_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16228.9, + "Centroid Y µm": 22425.6, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/021/TumorCenter_CD8_block11_x3_y9_patient021_0.json b/021/TumorCenter_CD8_block11_x3_y9_patient021_0.json new file mode 100644 index 0000000000000000000000000000000000000000..ffd8ac61196d79df58a576f43e981b4b6487b91b --- /dev/null +++ b/021/TumorCenter_CD8_block11_x3_y9_patient021_0.json @@ -0,0 +1,11 @@ +{ + 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--git a/021/icd_codes.txt b/021/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/021/ops_codes.txt b/021/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/021/patient_clinical_data.json b/021/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..bef10b4fba7e10dbc0233e2d61727f8944536399 --- /dev/null +++ b/021/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2011, + "age_at_initial_diagnosis": 56, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": null, + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 47, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + 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diff --git a/022/TumorCenter_CD8_block22_x5_y1_patient022_0.json b/022/TumorCenter_CD8_block22_x5_y1_patient022_0.json new file mode 100644 index 0000000000000000000000000000000000000000..abbd91e4556c2bb2d5fec3e82c8d3d5b86c844b4 --- /dev/null +++ b/022/TumorCenter_CD8_block22_x5_y1_patient022_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19389.7, + "Centroid Y µm": 12643.3, + "Num Detections": 19055, + "Num Negative": 18943, + "Num Positive": 112, + "Positive %": 0.5878, + "Num Positive per mm^2": 46.43 + } +} \ No newline at end of file diff --git a/022/TumorCenter_CD8_block22_x6_y1_patient022_1.json b/022/TumorCenter_CD8_block22_x6_y1_patient022_1.json new file mode 100644 index 0000000000000000000000000000000000000000..36dd32568308d69e8d27d441024a746d0a5f5558 --- /dev/null +++ b/022/TumorCenter_CD8_block22_x6_y1_patient022_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 21788.5, + "Centroid Y µm": 12593.3, + "Num Detections": 15996, + "Num Negative": 15900, + "Num Positive": 96, + "Positive %": 0.6002, + "Num Positive per mm^2": 43.76 + } +} \ No newline at end of file diff --git a/022/history_text.txt b/022/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/022/icd_codes.txt b/022/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/022/ops_codes.txt b/022/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/022/patient_clinical_data.json b/022/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..6330a31a263f84048eca47409279e636ec3697ee --- /dev/null +++ b/022/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2008, + "age_at_initial_diagnosis": 57, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 17, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/022/patient_pathological_data.json b/022/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..91a5379520c5523602c73762b421bc682be11006 --- /dev/null +++ b/022/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "022", + "primary_tumor_site": "Larynx", + "pT_stage": "pT1b", + "pN_stage": "NX", + "grading": "G2", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": NaN, + 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0000000000000000000000000000000000000000..2c348ac5c2854d6932bf731e6c36384ee3958f07 --- /dev/null +++ b/023/InvasionFront_CD3_block9_x1_y5_patient023_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5647.0, + "Centroid Y µm": 12693.3, + "Num Detections": 15050, + "Num Negative": 12770, + "Num Positive": 2280, + "Positive %": 15.15, + "Num Positive per mm^2": 1287.8 + } +} \ No newline at end of file diff --git a/023/InvasionFront_CD3_block9_x2_y5_patient023_1.json b/023/InvasionFront_CD3_block9_x2_y5_patient023_1.json new file mode 100644 index 0000000000000000000000000000000000000000..28f950bbb2331cd3a9d9f9d3cc91f11c327dea37 --- /dev/null +++ b/023/InvasionFront_CD3_block9_x2_y5_patient023_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 8145.7, + "Centroid Y µm": 12768.2, + "Num Detections": 20291, + "Num Negative": 20127, + "Num Positive": 164, + "Positive %": 0.8082, + "Num Positive per mm^2": 67.38 + } +} \ No newline at end of file diff --git a/023/InvasionFront_CD8_block9_x1_y5_patient023_0.json b/023/InvasionFront_CD8_block9_x1_y5_patient023_0.json new file mode 100644 index 0000000000000000000000000000000000000000..b07cd58071df318fb23457f331fec52e9c99f70f --- /dev/null +++ b/023/InvasionFront_CD8_block9_x1_y5_patient023_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5422.1, + "Centroid Y µm": 16766.1, + "Num Detections": 15818, + "Num Negative": 14677, + "Num Positive": 1141, + "Positive %": 7.213, + "Num Positive per mm^2": 681.27 + } +} \ No newline at end of file diff --git a/023/InvasionFront_CD8_block9_x2_y5_patient023_1.json b/023/InvasionFront_CD8_block9_x2_y5_patient023_1.json new file mode 100644 index 0000000000000000000000000000000000000000..f3bc72bc81ba520c55f17ae1424450c1680c3616 --- /dev/null +++ b/023/InvasionFront_CD8_block9_x2_y5_patient023_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7995.8, + "Centroid Y µm": 16916.0, + "Num Detections": 21712, + "Num Negative": 21600, + "Num Positive": 112, + "Positive %": 0.5158, + "Num Positive per mm^2": 46.63 + } +} \ No newline at end of file diff --git a/023/TumorCenter_CD3_block9_x1_y5_patient023_0.json b/023/TumorCenter_CD3_block9_x1_y5_patient023_0.json new file mode 100644 index 0000000000000000000000000000000000000000..0ea89f53f87a4d3c864630761f0b3c32f6657137 --- /dev/null +++ b/023/TumorCenter_CD3_block9_x1_y5_patient023_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4197.8, + "Centroid Y µm": 17940.5, + "Num Detections": 14334, + "Num Negative": 13355, + "Num Positive": 979, + "Positive %": 6.83, + "Num Positive per mm^2": 435.74 + } +} \ No newline at end of file diff --git a/023/TumorCenter_CD3_block9_x2_y5_patient023_1.json b/023/TumorCenter_CD3_block9_x2_y5_patient023_1.json new file mode 100644 index 0000000000000000000000000000000000000000..72cfbb85f15398834fcf8607f632800dc6d0fb13 --- /dev/null +++ b/023/TumorCenter_CD3_block9_x2_y5_patient023_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6646.5, + "Centroid Y µm": 18015.5, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/023/TumorCenter_CD8_block9_x1_y5_patient023_0.json b/023/TumorCenter_CD8_block9_x1_y5_patient023_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5151594a487f26e1948e878dec3727d9bd455e7d --- /dev/null +++ b/023/TumorCenter_CD8_block9_x1_y5_patient023_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3897.9, + "Centroid Y µm": 13642.8, + "Num Detections": 16191, + "Num Negative": 15867, + "Num Positive": 324, + "Positive %": 2.001, + "Num Positive per mm^2": 164.52 + } +} \ No newline at end of file diff --git a/023/TumorCenter_CD8_block9_x2_y5_patient023_1.json b/023/TumorCenter_CD8_block9_x2_y5_patient023_1.json new file mode 100644 index 0000000000000000000000000000000000000000..7baab334d45522625b5ca63641a8f7858001e71f --- /dev/null +++ b/023/TumorCenter_CD8_block9_x2_y5_patient023_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6371.6, + "Centroid Y µm": 13517.8, + "Num Detections": 7788, + "Num Negative": 7611, + "Num Positive": 177, + "Positive %": 2.273, + "Num Positive per mm^2": 193.57 + } +} \ No newline at end of file diff --git a/023/history_text.txt b/023/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/023/icd_codes.txt b/023/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/023/ops_codes.txt b/023/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/023/patient_clinical_data.json b/023/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..1e8d757eaed6dcfa7fceaeed7ec66b4c9cc70f0e --- /dev/null +++ b/023/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2014, + "age_at_initial_diagnosis": 78, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 76, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/023/patient_pathological_data.json b/023/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..1834955e487428e3edd7bae873c49fee065f4e25 --- /dev/null +++ b/023/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "023", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT2", + "pN_stage": "NX", + "grading": "G3", + "hpv_association_p16": "negative", + "number_of_positive_lymph_nodes": NaN, + "number_of_resected_lymph_nodes": 0, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "yes", + "perineural_invasion_Pn": "yes", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "Ris0", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 8.0 +} \ No newline at end of file diff --git a/023/surgery_description.txt b/023/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/023/surgery_report.txt b/023/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/024/InvasionFront_CD3_block10_x1_y8_patient024_0.json b/024/InvasionFront_CD3_block10_x1_y8_patient024_0.json new file mode 100644 index 0000000000000000000000000000000000000000..874c78dcdb01d629f9486129ce3bce031fdb8565 --- /dev/null +++ b/024/InvasionFront_CD3_block10_x1_y8_patient024_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4997.4, + "Centroid Y µm": 25211.7, + "Num Detections": 24734, + "Num Negative": 22654, + "Num Positive": 2080, + "Positive %": 8.409, + "Num Positive per mm^2": 820.57 + } +} \ No newline at end of file diff --git a/024/InvasionFront_CD3_block10_x2_y8_patient024_1.json b/024/InvasionFront_CD3_block10_x2_y8_patient024_1.json new file mode 100644 index 0000000000000000000000000000000000000000..8c6839443447ea8065cb39668566a97fe06276a3 --- /dev/null +++ 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file diff --git a/025/TumorCenter_CD8_block10_x5_y12_patient025_0.json b/025/TumorCenter_CD8_block10_x5_y12_patient025_0.json new file mode 100644 index 0000000000000000000000000000000000000000..3807ec12cdb0872eaf79b3b2bca8ff1f166da0b6 --- /dev/null +++ b/025/TumorCenter_CD8_block10_x5_y12_patient025_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16491.3, + "Centroid Y µm": 29984.1, + "Num Detections": 15081, + "Num Negative": 14902, + "Num Positive": 179, + "Positive %": 1.187, + "Num Positive per mm^2": 76.45 + } +} \ No newline at end of file diff --git a/025/TumorCenter_CD8_block10_x6_y12_patient025_1.json b/025/TumorCenter_CD8_block10_x6_y12_patient025_1.json new file mode 100644 index 0000000000000000000000000000000000000000..fb2113fffd823bdfc9039210ba72a022edcb0be7 --- /dev/null +++ b/025/TumorCenter_CD8_block10_x6_y12_patient025_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18965.0, + "Centroid Y µm": 29934.2, + 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0000000000000000000000000000000000000000..1f004ea6b4507eeb0cce0f74bb42e1f148604d1a --- /dev/null +++ b/026/InvasionFront_CD3_block15_x3_y11_patient026_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14114.2, + "Centroid Y µm": 37380.8, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/026/InvasionFront_CD3_block15_x4_y11_patient026_1.json b/026/InvasionFront_CD3_block15_x4_y11_patient026_1.json new file mode 100644 index 0000000000000000000000000000000000000000..97ee6710046fa484d523a018615aecc6c33bf632 --- /dev/null +++ b/026/InvasionFront_CD3_block15_x4_y11_patient026_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16641.2, + "Centroid Y µm": 37530.1, + "Num Detections": 14422, + "Num Negative": 13056, + "Num Positive": 1366, + "Positive %": 9.472, + "Num Positive per mm^2": 889.29 + } +} \ No newline at end of file diff --git a/026/InvasionFront_CD8_block15_x3_y11_patient026_0.json b/026/InvasionFront_CD8_block15_x3_y11_patient026_0.json new file mode 100644 index 0000000000000000000000000000000000000000..e8aceac6d9da4398f79170ba1c6533d07a2026e4 --- /dev/null +++ b/026/InvasionFront_CD8_block15_x3_y11_patient026_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11547.3, + "Centroid Y µm": 27012.7, + "Num Detections": 15675, + "Num Negative": 14203, + "Num Positive": 1472, + "Positive %": 9.391, + "Num Positive per mm^2": 797.45 + } +} \ No newline at end of file diff --git a/026/InvasionFront_CD8_block15_x4_y11_patient026_1.json b/026/InvasionFront_CD8_block15_x4_y11_patient026_1.json new file mode 100644 index 0000000000000000000000000000000000000000..f329807194061a3551674707a78c87ef57863e64 --- /dev/null +++ b/026/InvasionFront_CD8_block15_x4_y11_patient026_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14145.6, + "Centroid Y µm": 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0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/026/surgery_report.txt b/026/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/027/InvasionFront_CD3_block11_x5_y5_patient027_0.json b/027/InvasionFront_CD3_block11_x5_y5_patient027_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c5c0aab4f64813025299fff66c006e80d1e9f8bd --- /dev/null +++ b/027/InvasionFront_CD3_block11_x5_y5_patient027_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15541.8, + "Centroid Y µm": 11993.6, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/027/InvasionFront_CD3_block11_x6_y5_patient027_1.json b/027/InvasionFront_CD3_block11_x6_y5_patient027_1.json new file mode 100644 index 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a/027/InvasionFront_CD8_block11_x6_y5_patient027_1.json b/027/InvasionFront_CD8_block11_x6_y5_patient027_1.json new file mode 100644 index 0000000000000000000000000000000000000000..fc21ef06cc266e7c6cf8f3363640f4a7520831dc --- /dev/null +++ b/027/InvasionFront_CD8_block11_x6_y5_patient027_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 21157.4, + "Centroid Y µm": 22971.0, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/027/TumorCenter_CD3_block11_x5_y5_patient027_0.json b/027/TumorCenter_CD3_block11_x5_y5_patient027_0.json new file mode 100644 index 0000000000000000000000000000000000000000..1c149611c058f0c730975cbbc5f3854ad8b7be71 --- /dev/null +++ b/027/TumorCenter_CD3_block11_x5_y5_patient027_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19450.3, + "Centroid Y µm": 12673.7, + "Num Detections": 0, + "Num 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a/027/icd_codes.txt b/027/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/027/ops_codes.txt b/027/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/027/patient_clinical_data.json b/027/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..8d87621f470fbb01f429c3aba8bf69c3efc44da0 --- /dev/null +++ b/027/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2009, + "age_at_initial_diagnosis": 71, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased not tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 28, + "adjuvant_treatment_intent": "curative", + 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b/028/InvasionFront_CD8_block7_x3_y8_patient028_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11743.8, + "Centroid Y µm": 20264.3, + "Num Detections": 19711, + "Num Negative": 19183, + "Num Positive": 528, + "Positive %": 2.679, + "Num Positive per mm^2": 249.02 + } +} \ No newline at end of file diff --git a/028/InvasionFront_CD8_block7_x4_y8_patient028_1.json b/028/InvasionFront_CD8_block7_x4_y8_patient028_1.json new file mode 100644 index 0000000000000000000000000000000000000000..58cfe916fe536053710f487a3bfa2c2ad4ebea55 --- /dev/null +++ b/028/InvasionFront_CD8_block7_x4_y8_patient028_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14342.4, + "Centroid Y µm": 20689.0, + "Num Detections": 21516, + "Num Negative": 19725, + "Num Positive": 1791, + "Positive %": 8.324, + "Num Positive per mm^2": 768.76 + } +} \ No newline at end of file diff --git a/028/TumorCenter_CD3_block7_x3_y8_patient028_0.json 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"Positive %": 17.95, + "Num Positive per mm^2": 1568.1 + } +} \ No newline at end of file diff --git a/028/TumorCenter_CD8_block7_x3_y8_patient028_0.json b/028/TumorCenter_CD8_block7_x3_y8_patient028_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c0fb0783a83976b13d0955152f9a73318b2d7293 --- /dev/null +++ b/028/TumorCenter_CD8_block7_x3_y8_patient028_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 10619.4, + "Centroid Y µm": 20064.4, + "Num Detections": 29228, + "Num Negative": 26570, + "Num Positive": 2658, + "Positive %": 9.094, + "Num Positive per mm^2": 1039.4 + } +} \ No newline at end of file diff --git a/028/TumorCenter_CD8_block7_x4_y8_patient028_1.json b/028/TumorCenter_CD8_block7_x4_y8_patient028_1.json new file mode 100644 index 0000000000000000000000000000000000000000..aa011205b0f6194e2920eaf6a5e4c4653d454dcb --- /dev/null +++ b/028/TumorCenter_CD8_block7_x4_y8_patient028_1.json @@ -0,0 +1,11 @@ +{ + 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"Positive %": 7.46, + "Num Positive per mm^2": 756.72 + } +} \ No newline at end of file diff --git a/029/InvasionFront_CD8_block3_x5_y2_patient029_0.json b/029/InvasionFront_CD8_block3_x5_y2_patient029_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c7c789a88d00cbc5f28a53d5b73cb31c015ca6d9 --- /dev/null +++ b/029/InvasionFront_CD8_block3_x5_y2_patient029_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17430.6, + "Centroid Y µm": 4679.8, + "Num Detections": 17455, + "Num Negative": 15449, + "Num Positive": 2006, + "Positive %": 11.49, + "Num Positive per mm^2": 1199.3 + } +} \ No newline at end of file diff --git a/029/InvasionFront_CD8_block3_x6_y2_patient029_1.json b/029/InvasionFront_CD8_block3_x6_y2_patient029_1.json new file mode 100644 index 0000000000000000000000000000000000000000..5add6011094562d3c6bac857b791e7169dd1660c --- /dev/null +++ b/029/InvasionFront_CD8_block3_x6_y2_patient029_1.json @@ -0,0 +1,11 @@ +{ + 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file diff --git a/029/TumorCenter_CD8_block3_x6_y2_patient029_1.json b/029/TumorCenter_CD8_block3_x6_y2_patient029_1.json new file mode 100644 index 0000000000000000000000000000000000000000..be532ae3097e9dec306b11f679ad864be95e1f65 --- /dev/null +++ b/029/TumorCenter_CD8_block3_x6_y2_patient029_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19889.5, + "Centroid Y µm": 6921.3, + "Num Detections": 25612, + "Num Negative": 20664, + "Num Positive": 4948, + "Positive %": 19.32, + "Num Positive per mm^2": 2025.0 + } +} \ No newline at end of file diff --git a/029/history_text.txt b/029/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/029/icd_codes.txt b/029/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/029/ops_codes.txt b/029/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/029/patient_clinical_data.json b/029/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..0a4438668cf66349fd83e438d2d6a423c3229bf2 --- /dev/null +++ b/029/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2015, + "age_at_initial_diagnosis": 66, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased not tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 19, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/029/patient_pathological_data.json b/029/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..9b2770779b95ac04b536a20481e54ec68535afbe --- /dev/null +++ b/029/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "029", + "primary_tumor_site": "Hypopharynx", + "pT_stage": "pTis", + "pN_stage": "NX", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": NaN, + "number_of_resected_lymph_nodes": 0, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "RX", + "resection_status_carcinoma_in_situ": "Ris1", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": null, + "histologic_type": "SCC_Conventional-NonKeratinizing", + "infiltration_depth_in_mm": NaN +} \ No newline at end of file diff --git a/029/surgery_description.txt b/029/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/029/surgery_report.txt b/029/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/030/InvasionFront_CD3_block8_x3_y10_patient030_0.json b/030/InvasionFront_CD3_block8_x3_y10_patient030_0.json new file mode 100644 index 0000000000000000000000000000000000000000..607fdc70cc9e6f74a2e4c24113f72ebe6ae90412 --- /dev/null +++ b/030/InvasionFront_CD3_block8_x3_y10_patient030_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11369.0, + "Centroid Y µm": 35406.3, + "Num Detections": 21057, + "Num Negative": 17607, + "Num Positive": 3450, + "Positive %": 16.38, + "Num Positive per mm^2": 1391.4 + } +} \ No newline at end of file diff --git a/030/InvasionFront_CD3_block8_x4_y10_patient030_1.json b/030/InvasionFront_CD3_block8_x4_y10_patient030_1.json new file mode 100644 index 0000000000000000000000000000000000000000..4187d9689e4dcc4bcbc09325d8b15ba67bc83cde --- /dev/null +++ b/030/InvasionFront_CD3_block8_x4_y10_patient030_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13917.6, + "Centroid Y µm": 35356.3, + "Num Detections": 19413, + "Num Negative": 14837, + "Num Positive": 4576, + "Positive %": 23.57, + "Num Positive per mm^2": 1943.4 + } +} \ No newline at end of file diff --git a/030/InvasionFront_CD8_block8_x3_y10_patient030_0.json b/030/InvasionFront_CD8_block8_x3_y10_patient030_0.json new file mode 100644 index 0000000000000000000000000000000000000000..84747cb3407676fd7060473d52fd24bd8e694745 --- /dev/null +++ b/030/InvasionFront_CD8_block8_x3_y10_patient030_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 10919.2, + "Centroid Y µm": 25561.5, + "Num Detections": 19646, + "Num Negative": 9230, + "Num Positive": 10416, + "Positive %": 53.02, + "Num Positive per mm^2": 4212.5 + } +} \ No newline at end of file diff --git a/030/InvasionFront_CD8_block8_x4_y10_patient030_1.json b/030/InvasionFront_CD8_block8_x4_y10_patient030_1.json new file mode 100644 index 0000000000000000000000000000000000000000..f55395ca10a134c6910a5aef616a727cfc2b003a --- /dev/null +++ b/030/InvasionFront_CD8_block8_x4_y10_patient030_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13417.9, + "Centroid Y µm": 25711.4, + "Num Detections": 18237, + "Num Negative": 8173, + "Num Positive": 10064, + "Positive %": 55.18, + "Num Positive per mm^2": 4192.4 + } +} \ No newline at end of file diff --git a/030/TumorCenter_CD3_block8_x3_y10_patient030_0.json b/030/TumorCenter_CD3_block8_x3_y10_patient030_0.json new file mode 100644 index 0000000000000000000000000000000000000000..ad6a7200d8d21283e30b20a8780efe85157b32c4 --- /dev/null +++ b/030/TumorCenter_CD3_block8_x3_y10_patient030_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12993.1, + 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--- /dev/null +++ b/030/TumorCenter_CD8_block8_x3_y10_patient030_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12318.5, + "Centroid Y µm": 25586.5, + "Num Detections": 22313, + "Num Negative": 15497, + "Num Positive": 6816, + "Positive %": 30.55, + "Num Positive per mm^2": 2813.8 + } +} \ No newline at end of file diff --git a/030/TumorCenter_CD8_block8_x4_y10_patient030_1.json b/030/TumorCenter_CD8_block8_x4_y10_patient030_1.json new file mode 100644 index 0000000000000000000000000000000000000000..6f0d4ac02f359f8a39e355d622ed1bea1b74c9ce --- /dev/null +++ b/030/TumorCenter_CD8_block8_x4_y10_patient030_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14867.1, + "Centroid Y µm": 25361.6, + "Num Detections": 20001, + "Num Negative": 12811, + "Num Positive": 7190, + "Positive %": 35.95, + "Num Positive per mm^2": 3195.5 + } +} \ No newline at end of file diff --git a/030/history_text.txt b/030/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/030/icd_codes.txt b/030/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/030/ops_codes.txt b/030/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/030/patient_clinical_data.json b/030/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..5ec99b08250392a06d7ee357c2b405932586de9f --- /dev/null +++ b/030/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 57, + "sex": "female", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + 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16891.1, + "Centroid Y µm": 17615.7, + "Num Detections": 24836, + "Num Negative": 24526, + "Num Positive": 310, + "Positive %": 1.248, + "Num Positive per mm^2": 118.64 + } +} \ No newline at end of file diff --git a/031/InvasionFront_CD3_block12_x6_y5_patient031_1.json b/031/InvasionFront_CD3_block12_x6_y5_patient031_1.json new file mode 100644 index 0000000000000000000000000000000000000000..fec565fd98690c7da6c28079cd9784aa80593ab3 --- /dev/null +++ b/031/InvasionFront_CD3_block12_x6_y5_patient031_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19339.8, + "Centroid Y µm": 17815.6, + "Num Detections": 21799, + "Num Negative": 21619, + "Num Positive": 180, + "Positive %": 0.8257, + "Num Positive per mm^2": 78.25 + } +} \ No newline at end of file diff --git a/031/InvasionFront_CD8_block12_x5_y5_patient031_0.json b/031/InvasionFront_CD8_block12_x5_y5_patient031_0.json new file mode 100644 index 0000000000000000000000000000000000000000..ef3abb53f2787c6526ee236970bd32793d5f51c2 --- /dev/null +++ b/031/InvasionFront_CD8_block12_x5_y5_patient031_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17315.8, + "Centroid Y µm": 16041.5, + "Num Detections": 25545, + "Num Negative": 25076, + "Num Positive": 469, + "Positive %": 1.836, + "Num Positive per mm^2": 180.15 + } +} \ No newline at end of file diff --git a/031/InvasionFront_CD8_block12_x6_y5_patient031_1.json b/031/InvasionFront_CD8_block12_x6_y5_patient031_1.json new file mode 100644 index 0000000000000000000000000000000000000000..83413698761307268e80a3c9abb985ad5d854a8e --- /dev/null +++ b/031/InvasionFront_CD8_block12_x6_y5_patient031_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19789.5, + "Centroid Y µm": 16016.5, + "Num Detections": 22399, + "Num Negative": 21846, + "Num Positive": 553, + "Positive %": 2.469, + "Num Positive per mm^2": 238.69 + } +} \ No newline at end of file diff --git a/031/TumorCenter_CD3_block12_x5_y5_patient031_0.json b/031/TumorCenter_CD3_block12_x5_y5_patient031_0.json new file mode 100644 index 0000000000000000000000000000000000000000..b8078bd27d9aafe2e2cecf302c514e3a47eef53b --- /dev/null +++ b/031/TumorCenter_CD3_block12_x5_y5_patient031_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15766.7, + "Centroid Y µm": 12593.3, + "Num Detections": 9654, + "Num Negative": 9427, + "Num Positive": 227, + "Positive %": 2.351, + "Num Positive per mm^2": 204.5 + } +} \ No newline at end of file diff --git a/031/TumorCenter_CD3_block12_x6_y5_patient031_1.json b/031/TumorCenter_CD3_block12_x6_y5_patient031_1.json new file mode 100644 index 0000000000000000000000000000000000000000..9f83e35480ba477f0f8c9615e5fe7b0cc4348520 --- /dev/null +++ b/031/TumorCenter_CD3_block12_x6_y5_patient031_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18315.3, + "Centroid Y µm": 12493.4, + "Num Detections": 28730, + "Num Negative": 28536, + "Num Positive": 194, + "Positive %": 0.6753, + "Num Positive per mm^2": 68.51 + } +} \ No newline at end of file diff --git a/031/TumorCenter_CD8_block12_x5_y5_patient031_0.json b/031/TumorCenter_CD8_block12_x5_y5_patient031_0.json new file mode 100644 index 0000000000000000000000000000000000000000..e26855e4276842a5806253650b65dea09e142f33 --- /dev/null +++ b/031/TumorCenter_CD8_block12_x5_y5_patient031_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19189.8, + "Centroid Y µm": 22263.2, + "Num Detections": 6843, + "Num Negative": 6798, + "Num Positive": 45, + "Positive %": 0.6576, + "Num Positive per mm^2": 62.21 + } +} \ No newline at end of file diff --git a/031/TumorCenter_CD8_block12_x6_y5_patient031_1.json b/031/TumorCenter_CD8_block12_x6_y5_patient031_1.json new file mode 100644 index 0000000000000000000000000000000000000000..ae8df5641126a19acfb661a1b583675dd9cdc4e3 --- /dev/null +++ b/031/TumorCenter_CD8_block12_x6_y5_patient031_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 21588.6, + "Centroid Y µm": 22188.3, + "Num Detections": 26436, + "Num Negative": 26347, + "Num Positive": 89, + "Positive %": 0.3367, + "Num Positive per mm^2": 31.96 + } +} \ No newline at end of file diff --git a/031/history_text.txt b/031/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/031/icd_codes.txt b/031/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/031/ops_codes.txt b/031/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/031/patient_clinical_data.json b/031/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..e04db8c31d13d4ecdfa420b105474156fed3b664 --- /dev/null +++ b/031/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2009, + "age_at_initial_diagnosis": 60, + "sex": "female", + "smoking_status": "smoker", + "primarily_metastasis": null, + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 29, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/031/patient_pathological_data.json b/031/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..fab56c3a6e2e5280872494578dca239b1dd2a2fc --- /dev/null +++ b/031/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "031", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT2", + "pN_stage": "pN0", + "grading": "G2", + "hpv_association_p16": "negative", + "number_of_positive_lymph_nodes": 0.0, + "number_of_resected_lymph_nodes": 38, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "yes", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": NaN +} \ No newline at end of file diff --git a/031/surgery_description.txt b/031/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/031/surgery_report.txt b/031/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/032/InvasionFront_CD3_block19_x3_y2_patient032_0.json b/032/InvasionFront_CD3_block19_x3_y2_patient032_0.json new file mode 100644 index 0000000000000000000000000000000000000000..8d91c82dd1ca3b06e17fa0c6a6b93607d7e3a480 --- /dev/null +++ b/032/InvasionFront_CD3_block19_x3_y2_patient032_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12684.2, + "Centroid Y µm": 7609.6, + "Num Detections": 17470, + "Num Negative": 17258, + "Num Positive": 212, + "Positive %": 1.214, + "Num Positive per mm^2": 121.43 + } +} \ No newline at end of file diff --git a/032/InvasionFront_CD3_block19_x4_y2_patient032_1.json b/032/InvasionFront_CD3_block19_x4_y2_patient032_1.json new file mode 100644 index 0000000000000000000000000000000000000000..a90d1cae9b8a936cf36c56d9ce2462f2b3b3dc6d --- /dev/null +++ b/032/InvasionFront_CD3_block19_x4_y2_patient032_1.json @@ -0,0 +1,11 @@ +{ + 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0000000000000000000000000000000000000000..225e6b4de3ced994e2032c220047b0b57d76334f --- /dev/null +++ b/032/InvasionFront_CD8_block19_x4_y2_patient032_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14492.3, + "Centroid Y µm": 15017.0, + "Num Detections": 23383, + "Num Negative": 23025, + "Num Positive": 358, + "Positive %": 1.531, + "Num Positive per mm^2": 141.65 + } +} \ No newline at end of file diff --git a/032/TumorCenter_CD3_block19_x3_y2_patient032_0.json b/032/TumorCenter_CD3_block19_x3_y2_patient032_0.json new file mode 100644 index 0000000000000000000000000000000000000000..b22412dd73b91a2cc0d5b33264574e1a4dd93230 --- /dev/null +++ b/032/TumorCenter_CD3_block19_x3_y2_patient032_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 10344.5, + "Centroid Y µm": 6171.7, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/032/TumorCenter_CD3_block19_x4_y2_patient032_1.json b/032/TumorCenter_CD3_block19_x4_y2_patient032_1.json new file mode 100644 index 0000000000000000000000000000000000000000..da9e0522d66dab19f4b6ad61860bde9440523c5d --- /dev/null +++ b/032/TumorCenter_CD3_block19_x4_y2_patient032_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12868.2, + "Centroid Y µm": 5747.0, + "Num Detections": 19872, + "Num Negative": 18969, + "Num Positive": 903, + "Positive %": 4.544, + "Num Positive per mm^2": 383.34 + } +} \ No newline at end of file diff --git a/032/TumorCenter_CD8_block19_x3_y2_patient032_0.json b/032/TumorCenter_CD8_block19_x3_y2_patient032_0.json new file mode 100644 index 0000000000000000000000000000000000000000..b7b0b22baad3c581e41ca25f987cb60a398bc39b --- /dev/null +++ b/032/TumorCenter_CD8_block19_x3_y2_patient032_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13480.7, + "Centroid Y µm": 15831.5, + "Num Detections": 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0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/032/ops_codes.txt b/032/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/032/patient_clinical_data.json b/032/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..257a41d443cfc624de9f07d69176986d99d32a81 --- /dev/null +++ b/032/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2016, + "age_at_initial_diagnosis": 71, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 13, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/032/patient_pathological_data.json b/032/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..2fbe8a7fd665607e7ca1905c3a8bbcaf5f004790 --- /dev/null +++ b/032/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "032", + "primary_tumor_site": "Larynx", + "pT_stage": "pT1a", + "pN_stage": "NX", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": NaN, + "number_of_resected_lymph_nodes": 0, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "Ris0", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": null, + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 6.0 +} \ No newline at end of file diff --git a/032/surgery_description.txt b/032/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/032/surgery_report.txt b/032/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/033/InvasionFront_CD3_block8_x5_y6_patient033_0.json b/033/InvasionFront_CD3_block8_x5_y6_patient033_0.json new file mode 100644 index 0000000000000000000000000000000000000000..a40bd69977c1698d0f29a3bd1ddaecf3b644f928 --- /dev/null +++ b/033/InvasionFront_CD3_block8_x5_y6_patient033_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16416.3, + "Centroid Y µm": 25136.7, + "Num Detections": 24100, + "Num Negative": 21621, + "Num Positive": 2479, + "Positive %": 10.29, + "Num Positive per mm^2": 953.95 + } +} \ No newline at end of file diff --git a/033/InvasionFront_CD3_block8_x6_y6_patient033_1.json b/033/InvasionFront_CD3_block8_x6_y6_patient033_1.json new file mode 100644 index 0000000000000000000000000000000000000000..41c5f991453f25ee56e36c54f7d74fdac1a49aa8 --- /dev/null +++ b/033/InvasionFront_CD3_block8_x6_y6_patient033_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18940.0, + "Centroid Y µm": 25211.7, + "Num Detections": 23248, + "Num Negative": 21386, + "Num Positive": 1862, + "Positive %": 8.009, + "Num Positive per mm^2": 733.82 + } +} \ No newline at end of file diff --git a/033/InvasionFront_CD8_block8_x5_y6_patient033_0.json b/033/InvasionFront_CD8_block8_x5_y6_patient033_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c95154d4bb9fdc1edc491738ad2c861bd46aa5da --- /dev/null +++ b/033/InvasionFront_CD8_block8_x5_y6_patient033_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16841.1, + "Centroid Y µm": 15541.8, + "Num Detections": 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"survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 8, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/033/patient_pathological_data.json b/033/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..93e18f9ea07fe51a46136dc4b04da6964a17ca56 --- /dev/null +++ b/033/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "033", + "primary_tumor_site": "Hypopharynx", + "pT_stage": "pT2", + "pN_stage": "pN0", + "grading": "G2", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 0.0, + "number_of_resected_lymph_nodes": 29, + 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b/034/InvasionFront_CD3_block8_x5_y7_patient034_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16366.3, + "Centroid Y µm": 27660.4, + "Num Detections": 24614, + "Num Negative": 20041, + "Num Positive": 4573, + "Positive %": 18.58, + "Num Positive per mm^2": 1726.0 + } +} \ No newline at end of file diff --git a/034/InvasionFront_CD3_block8_x6_y7_patient034_1.json b/034/InvasionFront_CD3_block8_x6_y7_patient034_1.json new file mode 100644 index 0000000000000000000000000000000000000000..e6c430ca4d6c60e41a097d07666b9232e9931054 --- /dev/null +++ b/034/InvasionFront_CD3_block8_x6_y7_patient034_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19014.9, + "Centroid Y µm": 27610.4, + "Num Detections": 27447, + "Num Negative": 19135, + "Num Positive": 8312, + "Positive %": 30.28, + "Num Positive per mm^2": 3033.9 + } +} \ No newline at end of file diff --git a/034/InvasionFront_CD8_block8_x5_y7_patient034_0.json 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0000000000000000000000000000000000000000..92237da6a5776b40214bda8a3d2316db8121d01e --- /dev/null +++ b/034/TumorCenter_CD8_block8_x6_y7_patient034_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19714.6, + "Centroid Y µm": 17490.7, + "Num Detections": 27474, + "Num Negative": 24527, + "Num Positive": 2947, + "Positive %": 10.73, + "Num Positive per mm^2": 1093.1 + } +} \ No newline at end of file diff --git a/034/history_text.txt b/034/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/034/icd_codes.txt b/034/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/034/ops_codes.txt b/034/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/034/patient_clinical_data.json b/034/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..13415bc598b7bfc516c722b5ebd6b7334dad5fb8 --- /dev/null +++ b/034/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2014, + "age_at_initial_diagnosis": 58, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 29, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/034/patient_pathological_data.json b/034/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..544de44622ef6b3c642e4cdb968434ca553cf106 --- /dev/null +++ b/034/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "034", + "primary_tumor_site": "Hypopharynx", + "pT_stage": "pT2", + "pN_stage": "pN2b", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 3.0, + "number_of_resected_lymph_nodes": 28, + "perinodal_invasion": "yes", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "yes", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "Ris0", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": "<0.1", + "histologic_type": "SCC_Sarcomatoid", + "infiltration_depth_in_mm": 9.0 +} \ No newline at end of file diff --git a/034/surgery_description.txt b/034/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/034/surgery_report.txt b/034/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/035/InvasionFront_CD3_block21_x5_y1_patient035_0.json b/035/InvasionFront_CD3_block21_x5_y1_patient035_0.json new file mode 100644 index 0000000000000000000000000000000000000000..1e720918352d80dfb4bdb9d9deba7b2a8a687a9e --- /dev/null +++ b/035/InvasionFront_CD3_block21_x5_y1_patient035_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19214.8, + "Centroid Y µm": 12943.1, + "Num Detections": 20235, + "Num Negative": 17725, + "Num Positive": 2510, + "Positive %": 12.4, + "Num Positive per mm^2": 1072.7 + } +} \ No newline at end of file diff --git a/035/InvasionFront_CD3_block21_x6_y1_patient035_1.json b/035/InvasionFront_CD3_block21_x6_y1_patient035_1.json new file mode 100644 index 0000000000000000000000000000000000000000..22c08bad843cd4c8075e5c05b35c34d0e08a0ca3 --- /dev/null +++ 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%": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/035/TumorCenter_CD3_block21_x6_y1_patient035_1.json b/035/TumorCenter_CD3_block21_x6_y1_patient035_1.json new file mode 100644 index 0000000000000000000000000000000000000000..28688cbbb6bd19f77b2b44773c572a2ec4b3b08f --- /dev/null +++ b/035/TumorCenter_CD3_block21_x6_y1_patient035_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19089.9, + "Centroid Y µm": 3922.9, + "Num Detections": 11471, + "Num Negative": 11056, + "Num Positive": 415, + "Positive %": 3.618, + "Num Positive per mm^2": 336.73 + } +} \ No newline at end of file diff --git a/035/TumorCenter_CD8_block21_x5_y1_patient035_0.json b/035/TumorCenter_CD8_block21_x5_y1_patient035_0.json new file mode 100644 index 0000000000000000000000000000000000000000..a327ca7bb4746d7b4082cca706aade9783968a92 --- /dev/null +++ b/035/TumorCenter_CD8_block21_x5_y1_patient035_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": 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b/035/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/035/ops_codes.txt b/035/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/035/patient_clinical_data.json b/035/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..ec953176cc96f35353be6354a4996c83a8c99dc1 --- /dev/null +++ b/035/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 69, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 26, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/035/patient_pathological_data.json b/035/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..bf15252c36cadd838e5b625cd457fecf1e7e0897 --- /dev/null +++ b/035/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "035", + "primary_tumor_site": "Larynx", + "pT_stage": "pT1", + "pN_stage": "pN1", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 1.0, + "number_of_resected_lymph_nodes": 6, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.2", + "histologic_type": "SCC_Basaloid", + "infiltration_depth_in_mm": 4.0 +} \ No newline at end of file diff --git a/035/surgery_description.txt b/035/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/035/surgery_report.txt b/035/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/036/InvasionFront_CD3_block9_x1_y8_patient036_2.json b/036/InvasionFront_CD3_block9_x1_y8_patient036_2.json new file mode 100644 index 0000000000000000000000000000000000000000..24c7d670d41baa4bded4c3aebc27fd44f8ed37d4 --- /dev/null +++ b/036/InvasionFront_CD3_block9_x1_y8_patient036_2.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4797.5, + "Centroid Y µm": 19914.5, + "Num Detections": 19590, + "Num Negative": 19352, + "Num Positive": 238, + "Positive %": 1.215, + "Num Positive per mm^2": 108.4 + } +} \ No newline at end of file diff --git a/036/InvasionFront_CD3_block9_x2_y8_patient036_3.json b/036/InvasionFront_CD3_block9_x2_y8_patient036_3.json new file mode 100644 index 0000000000000000000000000000000000000000..b674d65ba6e14da9dcb6a7d60f3cb38d749f9be9 --- /dev/null +++ b/036/InvasionFront_CD3_block9_x2_y8_patient036_3.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7146.2, + "Centroid Y µm": 20014.4, + "Num Detections": 17521, + "Num Negative": 17079, + "Num Positive": 442, + "Positive %": 2.523, + "Num Positive per mm^2": 218.31 + } +} \ No newline at end of file diff --git a/036/InvasionFront_CD3_block9_x5_y7_patient036_0.json b/036/InvasionFront_CD3_block9_x5_y7_patient036_0.json new file mode 100644 index 0000000000000000000000000000000000000000..731e271867267090457ceafa349cd488b1c02351 --- /dev/null +++ b/036/InvasionFront_CD3_block9_x5_y7_patient036_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17615.7, + 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of file diff --git a/036/InvasionFront_CD8_block9_x5_y7_patient036_0.json b/036/InvasionFront_CD8_block9_x5_y7_patient036_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5997ea85440abe4f25c8759edae9e0a24663ec01 --- /dev/null +++ b/036/InvasionFront_CD8_block9_x5_y7_patient036_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17590.7, + "Centroid Y µm": 22188.3, + "Num Detections": 18709, + "Num Negative": 18350, + "Num Positive": 359, + "Positive %": 1.919, + "Num Positive per mm^2": 172.53 + } +} \ No newline at end of file diff --git a/036/InvasionFront_CD8_block9_x6_y7_patient036_1.json b/036/InvasionFront_CD8_block9_x6_y7_patient036_1.json new file mode 100644 index 0000000000000000000000000000000000000000..51442f26b9fdd8a9d546453476545128bb404236 --- /dev/null +++ b/036/InvasionFront_CD8_block9_x6_y7_patient036_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 20214.3, + "Centroid Y µm": 22363.2, + 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%": 0.2558, + "Num Positive per mm^2": 19.94 + } +} \ No newline at end of file diff --git a/036/TumorCenter_CD8_block9_x2_y8_patient036_3.json b/036/TumorCenter_CD8_block9_x2_y8_patient036_3.json new file mode 100644 index 0000000000000000000000000000000000000000..f351752e312343574c28d2d2445b7cdaa1139b0c --- /dev/null +++ b/036/TumorCenter_CD8_block9_x2_y8_patient036_3.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6514.6, + "Centroid Y µm": 21355.7, + "Num Detections": 11986, + "Num Negative": 11961, + "Num Positive": 25, + "Positive %": 0.2086, + "Num Positive per mm^2": 17.0 + } +} \ No newline at end of file diff --git a/036/TumorCenter_CD8_block9_x5_y7_patient036_0.json b/036/TumorCenter_CD8_block9_x5_y7_patient036_0.json new file mode 100644 index 0000000000000000000000000000000000000000..fa1b4113babd1911a3d0415c235203bdc42b4460 --- /dev/null +++ b/036/TumorCenter_CD8_block9_x5_y7_patient036_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { 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b/036/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/036/ops_codes.txt b/036/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/036/patient_clinical_data.json b/036/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..2834e82997f67ed16420a3851d943903b4b5e0c7 --- /dev/null +++ b/036/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2014, + "age_at_initial_diagnosis": 45, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 30, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "no", + 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file diff --git a/037/TumorCenter_CD8_block10_x5_y1_patient037_0.json b/037/TumorCenter_CD8_block10_x5_y1_patient037_0.json new file mode 100644 index 0000000000000000000000000000000000000000..dffbb9490820e3424db1c55a1e0c670d7a3ac668 --- /dev/null +++ b/037/TumorCenter_CD8_block10_x5_y1_patient037_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15341.9, + "Centroid Y µm": 2823.5, + "Num Detections": 28309, + "Num Negative": 21603, + "Num Positive": 6706, + "Positive %": 23.69, + "Num Positive per mm^2": 2365.2 + } +} \ No newline at end of file diff --git a/037/TumorCenter_CD8_block10_x6_y1_patient037_1.json b/037/TumorCenter_CD8_block10_x6_y1_patient037_1.json new file mode 100644 index 0000000000000000000000000000000000000000..dfa19b7ce0e12eea33fa6e7c3213432f830ecc65 --- /dev/null +++ b/037/TumorCenter_CD8_block10_x6_y1_patient037_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17865.5, + "Centroid Y µm": 2523.7, + "Num 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0000000000000000000000000000000000000000..b54ffeb50706b6097d6bbee07f7ae013261461ce --- /dev/null +++ b/038/InvasionFront_CD3_block10_x1_y7_patient038_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5372.2, + "Centroid Y µm": 22688.0, + "Num Detections": 24798, + "Num Negative": 19558, + "Num Positive": 5240, + "Positive %": 21.13, + "Num Positive per mm^2": 1990.3 + } +} \ No newline at end of file diff --git a/038/InvasionFront_CD3_block10_x2_y7_patient038_1.json b/038/InvasionFront_CD3_block10_x2_y7_patient038_1.json new file mode 100644 index 0000000000000000000000000000000000000000..f28b1f8d51d61b27f2b484ea350c581961c0e8a9 --- /dev/null +++ b/038/InvasionFront_CD3_block10_x2_y7_patient038_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7820.9, + "Centroid Y µm": 22787.9, + "Num Detections": 22793, + "Num Negative": 13811, + "Num Positive": 8982, + "Positive %": 39.41, + "Num Positive per mm^2": 3657.8 + } +} \ No newline at end of file diff --git a/038/InvasionFront_CD8_block10_x1_y7_patient038_0.json b/038/InvasionFront_CD8_block10_x1_y7_patient038_0.json new file mode 100644 index 0000000000000000000000000000000000000000..7314644918dab946781e3cd6d506e7abc44e032d --- /dev/null +++ b/038/InvasionFront_CD8_block10_x1_y7_patient038_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5072.3, + "Centroid Y µm": 23837.4, + "Num Detections": 26012, + "Num Negative": 23384, + "Num Positive": 2628, + "Positive %": 10.1, + "Num Positive per mm^2": 1019.5 + } +} \ No newline at end of file diff --git a/038/InvasionFront_CD8_block10_x2_y7_patient038_1.json b/038/InvasionFront_CD8_block10_x2_y7_patient038_1.json new file mode 100644 index 0000000000000000000000000000000000000000..1a3727c9e138b68b41bd6baafca2fcea7e8586e1 --- /dev/null +++ b/038/InvasionFront_CD8_block10_x2_y7_patient038_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7421.1, + "Centroid Y µm": 23637.5, + "Num Detections": 23378, + "Num Negative": 20086, + "Num Positive": 3292, + "Positive %": 14.08, + "Num Positive per mm^2": 1463.2 + } +} \ No newline at end of file diff --git a/038/TumorCenter_CD3_block10_x1_y7_patient038_0.json b/038/TumorCenter_CD3_block10_x1_y7_patient038_0.json new file mode 100644 index 0000000000000000000000000000000000000000..dbb825c46bf1f2b1afde8801201e1b3ebf5dd84b --- /dev/null +++ b/038/TumorCenter_CD3_block10_x1_y7_patient038_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6696.5, + "Centroid Y µm": 17490.7, + "Num Detections": 23163, + "Num Negative": 18426, + "Num Positive": 4737, + "Positive %": 20.45, + "Num Positive per mm^2": 1853.1 + } +} \ No newline at end of file diff --git a/038/TumorCenter_CD3_block10_x2_y7_patient038_1.json b/038/TumorCenter_CD3_block10_x2_y7_patient038_1.json new file mode 100644 index 0000000000000000000000000000000000000000..91e58606352534241becd24af792d2ce7fbeb907 --- /dev/null +++ b/038/TumorCenter_CD3_block10_x2_y7_patient038_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 9120.2, + "Centroid Y µm": 17440.8, + "Num Detections": 21771, + "Num Negative": 18569, + "Num Positive": 3202, + "Positive %": 14.71, + "Num Positive per mm^2": 1441.2 + } +} \ No newline at end of file diff --git a/038/TumorCenter_CD8_block10_x1_y7_patient038_0.json b/038/TumorCenter_CD8_block10_x1_y7_patient038_0.json new file mode 100644 index 0000000000000000000000000000000000000000..96f9928d8727a9260b4d70b7dd6b5cc0bfd7e7c2 --- /dev/null +++ b/038/TumorCenter_CD8_block10_x1_y7_patient038_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4022.9, + "Centroid Y µm": 18390.3, + "Num Detections": 22551, + "Num Negative": 17940, + "Num Positive": 4611, + "Positive %": 20.45, + "Num Positive per mm^2": 1845.2 + } +} \ No newline at end of file diff --git a/038/TumorCenter_CD8_block10_x2_y7_patient038_1.json b/038/TumorCenter_CD8_block10_x2_y7_patient038_1.json new file mode 100644 index 0000000000000000000000000000000000000000..078ca2e01daa107dbb1b8a31e122424377cad22d --- /dev/null +++ b/038/TumorCenter_CD8_block10_x2_y7_patient038_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6446.6, + "Centroid Y µm": 18265.3, + "Num Detections": 21708, + "Num Negative": 18703, + "Num Positive": 3005, + "Positive %": 13.84, + "Num Positive per mm^2": 1357.5 + } +} \ No newline at end of file diff --git a/038/history_text.txt b/038/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/038/icd_codes.txt b/038/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/038/ops_codes.txt b/038/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/038/patient_clinical_data.json b/038/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..64ae5e235c2b59543ae949318362349020a1fb78 --- /dev/null +++ b/038/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 55, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 39, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/038/patient_pathological_data.json b/038/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..f77aae7301112d2eb86928cd09a1791045d0701e --- /dev/null +++ b/038/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "038", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT2", + "pN_stage": "pN2", + "grading": "hpv_association_p16", + "hpv_association_p16": "positive", + "number_of_positive_lymph_nodes": 4.0, + "number_of_resected_lymph_nodes": 60, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "yes", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "Ris0", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Basaloid", + "infiltration_depth_in_mm": 6.0 +} \ No newline at end of file diff --git a/038/surgery_description.txt b/038/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/038/surgery_report.txt b/038/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/039/InvasionFront_CD3_block10_x5_y7_patient039_0.json b/039/InvasionFront_CD3_block10_x5_y7_patient039_0.json new file mode 100644 index 0000000000000000000000000000000000000000..f3fa3921d7569ac94430decec823a7ab2b8c832f --- /dev/null +++ b/039/InvasionFront_CD3_block10_x5_y7_patient039_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17858.3, + "Centroid Y µm": 24038.6, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/039/InvasionFront_CD3_block10_x6_y7_patient039_1.json b/039/InvasionFront_CD3_block10_x6_y7_patient039_1.json new file mode 100644 index 0000000000000000000000000000000000000000..3e226063460bfd557d1bf090c9aa6383eae997e7 --- /dev/null +++ b/039/InvasionFront_CD3_block10_x6_y7_patient039_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 20600.4, + "Centroid Y µm": 23988.2, + "Num Detections": 10748, + "Num Negative": 10430, + "Num Positive": 318, + "Positive %": 2.959, + "Num Positive per mm^2": 173.9 + } +} \ No newline at end of file diff --git a/039/InvasionFront_CD8_block10_x5_y7_patient039_0.json b/039/InvasionFront_CD8_block10_x5_y7_patient039_0.json new file mode 100644 index 0000000000000000000000000000000000000000..a9af19cae4f32621e8c5ac2220a05d9f57645221 --- /dev/null +++ b/039/InvasionFront_CD8_block10_x5_y7_patient039_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17565.7, + "Centroid Y µm": 24287.1, + "Num Detections": 5718, + "Num Negative": 5658, + "Num Positive": 60, + "Positive %": 1.049, + "Num Positive per mm^2": 84.27 + } +} \ No newline at end of file diff --git a/039/InvasionFront_CD8_block10_x6_y7_patient039_1.json b/039/InvasionFront_CD8_block10_x6_y7_patient039_1.json new file mode 100644 index 0000000000000000000000000000000000000000..74eea98ce553c5cc105263d7384ca95db6d57d18 --- /dev/null +++ b/039/InvasionFront_CD8_block10_x6_y7_patient039_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 20189.3, + "Centroid Y µm": 23862.4, + "Num Detections": 6346, + "Num Negative": 6185, + "Num Positive": 161, + "Positive %": 2.537, + "Num Positive per mm^2": 208.52 + } +} \ No newline at end of file diff --git a/039/TumorCenter_CD3_block10_x5_y7_patient039_0.json b/039/TumorCenter_CD3_block10_x5_y7_patient039_0.json new file mode 100644 index 0000000000000000000000000000000000000000..4a0286f976e532ea70880bcd7bbc0ea7ddeb1671 --- /dev/null +++ b/039/TumorCenter_CD3_block10_x5_y7_patient039_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19064.9, + "Centroid Y µm": 17290.8, + 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b/039/TumorCenter_CD8_block10_x5_y7_patient039_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16416.3, + "Centroid Y µm": 17840.6, + "Num Detections": 18646, + "Num Negative": 17475, + "Num Positive": 1171, + "Positive %": 6.28, + "Num Positive per mm^2": 521.67 + } +} \ No newline at end of file diff --git a/039/TumorCenter_CD8_block10_x6_y7_patient039_1.json b/039/TumorCenter_CD8_block10_x6_y7_patient039_1.json new file mode 100644 index 0000000000000000000000000000000000000000..67c1b17affdb7ff10c1043776008bb15b3633951 --- /dev/null +++ b/039/TumorCenter_CD8_block10_x6_y7_patient039_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18890.0, + "Centroid Y µm": 17815.6, + "Num Detections": 20037, + "Num Negative": 18529, + "Num Positive": 1508, + "Positive %": 7.526, + "Num Positive per mm^2": 635.67 + } +} \ No newline at end of file diff --git a/039/history_text.txt b/039/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/039/icd_codes.txt b/039/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/039/ops_codes.txt b/039/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/039/patient_clinical_data.json b/039/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..8da7bde22e5c26cf77b0a43bb18e180e3f7aae1c --- /dev/null +++ b/039/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 46, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 66, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/039/patient_pathological_data.json b/039/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..3c7b04f17d9eb6ed22e70947d5d0d898ec8ddee7 --- /dev/null +++ b/039/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "039", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT3", + "pN_stage": "pN1", + "grading": "G3", + "hpv_association_p16": "negative", + "number_of_positive_lymph_nodes": 1.0, + "number_of_resected_lymph_nodes": 27, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + 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0000000000000000000000000000000000000000..9e0076aea0c2f1c11fb9603c8e21c20988ba5c8b --- /dev/null +++ b/040/InvasionFront_CD8_block8_x3_y7_patient040_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11344.0, + "Centroid Y µm": 17640.7, + "Num Detections": 18234, + "Num Negative": 15237, + "Num Positive": 2997, + "Positive %": 16.44, + "Num Positive per mm^2": 1262.1 + } +} \ No newline at end of file diff --git a/040/InvasionFront_CD8_block8_x4_y7_patient040_1.json b/040/InvasionFront_CD8_block8_x4_y7_patient040_1.json new file mode 100644 index 0000000000000000000000000000000000000000..c5720ba8d0a83129abb8306ad02bcd8411464507 --- /dev/null +++ b/040/InvasionFront_CD8_block8_x4_y7_patient040_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14067.6, + "Centroid Y µm": 17940.5, + "Num Detections": 21823, + "Num Negative": 18669, + "Num Positive": 3154, + "Positive %": 14.45, + "Num Positive per mm^2": 1184.6 + } +} \ No newline at end of file diff --git a/040/TumorCenter_CD3_block8_x3_y7_patient040_0.json b/040/TumorCenter_CD3_block8_x3_y7_patient040_0.json new file mode 100644 index 0000000000000000000000000000000000000000..0bfa4f41d05f91237b2a2dd2802cfae289677025 --- /dev/null +++ b/040/TumorCenter_CD3_block8_x3_y7_patient040_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12168.6, + "Centroid Y µm": 18365.3, + "Num Detections": 25589, + "Num Negative": 21559, + "Num Positive": 4030, + "Positive %": 15.75, + "Num Positive per mm^2": 1519.2 + } +} \ No newline at end of file diff --git a/040/TumorCenter_CD3_block8_x4_y7_patient040_1.json b/040/TumorCenter_CD3_block8_x4_y7_patient040_1.json new file mode 100644 index 0000000000000000000000000000000000000000..151d029bf58543c4a9e1e06abd83d589b0ddb47a --- /dev/null +++ b/040/TumorCenter_CD3_block8_x4_y7_patient040_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14742.2, + "Centroid Y µm": 18090.4, + "Num Detections": 22440, + "Num Negative": 18756, + "Num Positive": 3684, + "Positive %": 16.42, + "Num Positive per mm^2": 1434.6 + } +} \ No newline at end of file diff --git a/040/TumorCenter_CD8_block8_x3_y7_patient040_0.json b/040/TumorCenter_CD8_block8_x3_y7_patient040_0.json new file mode 100644 index 0000000000000000000000000000000000000000..0e99c989e41cda35fa097242dc2b008f2e394adc --- /dev/null +++ b/040/TumorCenter_CD8_block8_x3_y7_patient040_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11868.7, + "Centroid Y µm": 18015.5, + "Num Detections": 27491, + "Num Negative": 21884, + "Num Positive": 5607, + "Positive %": 20.4, + "Num Positive per mm^2": 2030.3 + } +} \ No newline at end of file diff --git a/040/TumorCenter_CD8_block8_x4_y7_patient040_1.json b/040/TumorCenter_CD8_block8_x4_y7_patient040_1.json new file mode 100644 index 0000000000000000000000000000000000000000..dd8354baa1b7f700d6f42edbc58cfea84e70ffaa --- /dev/null +++ b/040/TumorCenter_CD8_block8_x4_y7_patient040_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14517.3, + "Centroid Y µm": 17865.5, + "Num Detections": 25278, + "Num Negative": 21116, + "Num Positive": 4162, + "Positive %": 16.46, + "Num Positive per mm^2": 1562.0 + } +} \ No newline at end of file diff --git a/040/history_text.txt b/040/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/040/icd_codes.txt b/040/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/040/ops_codes.txt b/040/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/040/patient_clinical_data.json b/040/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..1a6be1c155812d798311e80be88a887809b8443e --- /dev/null +++ b/040/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 57, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 10, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/040/patient_pathological_data.json b/040/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..47dde4782d8a45818f7c21510e0f6c2027c8e2cd --- /dev/null +++ b/040/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "040", + "primary_tumor_site": "Hypopharynx", + "pT_stage": "pT1", + "pN_stage": "pN2b", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 4.0, + "number_of_resected_lymph_nodes": 35, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "<0.1", + "histologic_type": "SCC_Basaloid", + "infiltration_depth_in_mm": 2.0 +} \ No newline at end of file diff --git a/040/surgery_description.txt b/040/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/040/surgery_report.txt b/040/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/041/InvasionFront_CD3_block18_x5_y10_patient041_0.json b/041/InvasionFront_CD3_block18_x5_y10_patient041_0.json new file mode 100644 index 0000000000000000000000000000000000000000..b7fe09a65919def838126a65296c3062b621a1eb --- /dev/null +++ b/041/InvasionFront_CD3_block18_x5_y10_patient041_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15716.7, + "Centroid Y µm": 29959.1, + "Num Detections": 19700, + "Num Negative": 18244, + "Num Positive": 1456, + "Positive %": 7.391, + "Num Positive per mm^2": 640.6 + } +} \ No newline at end of file diff --git a/041/InvasionFront_CD3_block18_x6_y10_patient041_1.json b/041/InvasionFront_CD3_block18_x6_y10_patient041_1.json new file mode 100644 index 0000000000000000000000000000000000000000..75e68bec6898cb2db50800bd21f1485d6cb2104b --- /dev/null +++ b/041/InvasionFront_CD3_block18_x6_y10_patient041_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18165.4, + "Centroid Y µm": 30159.0, + "Num Detections": 21217, + "Num Negative": 19047, + "Num Positive": 2170, + "Positive %": 10.23, + "Num Positive per mm^2": 922.11 + } +} \ No newline at end of file diff --git a/041/InvasionFront_CD8_block18_x5_y10_patient041_0.json b/041/InvasionFront_CD8_block18_x5_y10_patient041_0.json new file mode 100644 index 0000000000000000000000000000000000000000..eb0dbd2750230cb24177d5ba1e1d997151d04d7b --- /dev/null +++ b/041/InvasionFront_CD8_block18_x5_y10_patient041_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16266.4, + "Centroid Y µm": 32357.9, + "Num Detections": 20290, + "Num Negative": 19946, + "Num Positive": 344, + "Positive %": 1.695, + "Num Positive per mm^2": 148.29 + } +} \ No newline at end of file diff --git a/041/InvasionFront_CD8_block18_x6_y10_patient041_1.json b/041/InvasionFront_CD8_block18_x6_y10_patient041_1.json new file mode 100644 index 0000000000000000000000000000000000000000..d43f2e77cdb6e2edf3bcca063b91d396b5661b6c --- /dev/null +++ b/041/InvasionFront_CD8_block18_x6_y10_patient041_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18715.1, + "Centroid Y µm": 32407.8, + "Num Detections": 21704, + "Num Negative": 20889, + "Num Positive": 815, + "Positive %": 3.755, + "Num Positive per mm^2": 348.93 + } +} \ No newline at end of file diff --git a/041/TumorCenter_CD3_block18_x5_y10_patient041_0.json b/041/TumorCenter_CD3_block18_x5_y10_patient041_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c65129ad6a159615ac3766fe69d2f9e82484614e --- /dev/null +++ b/041/TumorCenter_CD3_block18_x5_y10_patient041_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15491.8, + "Centroid Y µm": 24287.1, + "Num Detections": 9676, + "Num Negative": 8481, + "Num Positive": 1195, + "Positive %": 12.35, + "Num Positive per mm^2": 727.48 + } +} \ No newline at end of file diff --git a/041/TumorCenter_CD3_block18_x6_y10_patient041_1.json b/041/TumorCenter_CD3_block18_x6_y10_patient041_1.json new file mode 100644 index 0000000000000000000000000000000000000000..7c7c86676691b7df41f72cc5b3b96376551102a2 --- /dev/null +++ b/041/TumorCenter_CD3_block18_x6_y10_patient041_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18015.5, + "Centroid Y µm": 24387.1, + "Num Detections": 21760, + "Num Negative": 21397, + "Num Positive": 363, + "Positive %": 1.668, + "Num Positive per mm^2": 154.36 + } +} \ No newline at end of file diff --git a/041/TumorCenter_CD8_block18_x5_y10_patient041_0.json b/041/TumorCenter_CD8_block18_x5_y10_patient041_0.json new file mode 100644 index 0000000000000000000000000000000000000000..6d793eeafd9f7be27afcc4529664069b26f85dde --- /dev/null +++ b/041/TumorCenter_CD8_block18_x5_y10_patient041_0.json @@ -0,0 +1,11 @@ +{ 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diff --git a/041/icd_codes.txt b/041/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/041/ops_codes.txt b/041/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/041/patient_clinical_data.json b/041/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..3005dfc259fad99e5f6cdd336a2a9992e830e7dd --- /dev/null +++ b/041/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2017, + "age_at_initial_diagnosis": 61, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 31, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + 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\ No newline at end of file diff --git a/042/InvasionFront_CD3_block4_x2_y4_patient042_1.json b/042/InvasionFront_CD3_block4_x2_y4_patient042_1.json new file mode 100644 index 0000000000000000000000000000000000000000..c3d350611597fa13d06dceff98ed7eec3128221e --- /dev/null +++ b/042/InvasionFront_CD3_block4_x2_y4_patient042_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 9395.0, + "Centroid Y µm": 16091.5, + "Num Detections": 16551, + "Num Negative": 14566, + "Num Positive": 1985, + "Positive %": 11.99, + "Num Positive per mm^2": 919.29 + } +} \ No newline at end of file diff --git a/042/InvasionFront_CD8_block4_x1_y4_patient042_0.json b/042/InvasionFront_CD8_block4_x1_y4_patient042_0.json new file mode 100644 index 0000000000000000000000000000000000000000..040d1a02d8c335610b276bbc860597fe8b46ecc5 --- /dev/null +++ b/042/InvasionFront_CD8_block4_x1_y4_patient042_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4029.5, + 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--- /dev/null +++ b/042/TumorCenter_CD3_block4_x1_y4_patient042_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3598.1, + "Centroid Y µm": 10069.7, + "Num Detections": 24697, + "Num Negative": 15790, + "Num Positive": 8907, + "Positive %": 36.07, + "Num Positive per mm^2": 3386.3 + } +} \ No newline at end of file diff --git a/042/TumorCenter_CD3_block4_x2_y4_patient042_1.json b/042/TumorCenter_CD3_block4_x2_y4_patient042_1.json new file mode 100644 index 0000000000000000000000000000000000000000..ea797f068d00885c1dea67e986c01fe1b7896e7f --- /dev/null +++ b/042/TumorCenter_CD3_block4_x2_y4_patient042_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6296.7, + "Centroid Y µm": 10169.6, + "Num Detections": 21893, + "Num Negative": 16129, + "Num Positive": 5764, + "Positive %": 26.33, + "Num Positive per mm^2": 2643.6 + } +} \ No newline at end of file diff --git a/042/TumorCenter_CD8_block4_x1_y4_patient042_0.json 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%": 27.88, + "Num Positive per mm^2": 2729.2 + } +} \ No newline at end of file diff --git a/042/history_text.txt b/042/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/042/icd_codes.txt b/042/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/042/ops_codes.txt b/042/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/042/patient_clinical_data.json b/042/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..bfe6a1dbb6a0794ac7892698fa34a447d0dd2f3d --- /dev/null +++ b/042/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2016, + "age_at_initial_diagnosis": 61, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": 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+ "Positive %": 4.311, + "Num Positive per mm^2": 434.47 + } +} \ No newline at end of file diff --git a/043/TumorCenter_CD3_block9_x5_y6_patient043_0.json b/043/TumorCenter_CD3_block9_x5_y6_patient043_0.json new file mode 100644 index 0000000000000000000000000000000000000000..344299dbd83c017664fa58a2e087f520a2fc6d7c --- /dev/null +++ b/043/TumorCenter_CD3_block9_x5_y6_patient043_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16491.3, + "Centroid Y µm": 20864.0, + "Num Detections": 17205, + "Num Negative": 16264, + "Num Positive": 941, + "Positive %": 5.469, + "Num Positive per mm^2": 398.8 + } +} \ No newline at end of file diff --git a/043/TumorCenter_CD3_block9_x6_y6_patient043_1.json b/043/TumorCenter_CD3_block9_x6_y6_patient043_1.json new file mode 100644 index 0000000000000000000000000000000000000000..6a6a5bfa3118ade6939f12d64fcee7caf91a1c31 --- /dev/null +++ b/043/TumorCenter_CD3_block9_x6_y6_patient043_1.json @@ -0,0 +1,11 @@ +{ + 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file mode 100644 index 0000000000000000000000000000000000000000..ab7f7d874d64aaaf67580d11e7b258d0cbbc9f07 --- /dev/null +++ b/043/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2014, + "age_at_initial_diagnosis": 65, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 60, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/043/patient_pathological_data.json b/043/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..3c0805c5eedf482d09da8b4e9177d0cb9a62861a --- /dev/null +++ b/043/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "043", + "primary_tumor_site": "Oral_Cavity", + "pT_stage": "pT4a", + "pN_stage": "NX", + "grading": "G2", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": NaN, + "number_of_resected_lymph_nodes": 0, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 9.0 +} \ No newline at end of file diff --git a/043/surgery_description.txt b/043/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/043/surgery_report.txt b/043/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/044/InvasionFront_CD3_block6_x5_y9_patient044_0.json b/044/InvasionFront_CD3_block6_x5_y9_patient044_0.json new file mode 100644 index 0000000000000000000000000000000000000000..7ef4f2edc65e545c28fcacaab73411a74faf7835 --- /dev/null +++ b/044/InvasionFront_CD3_block6_x5_y9_patient044_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16666.2, + "Centroid Y µm": 23737.4, + "Num Detections": 24509, + "Num Negative": 23003, + "Num Positive": 1506, + "Positive %": 6.145, + "Num Positive per mm^2": 580.76 + } +} \ No newline at end of file diff --git a/044/InvasionFront_CD3_block6_x6_y9_patient044_1.json b/044/InvasionFront_CD3_block6_x6_y9_patient044_1.json new file mode 100644 index 0000000000000000000000000000000000000000..7ca1c85304eab403016632bff47d56ff08e35037 --- /dev/null +++ b/044/InvasionFront_CD3_block6_x6_y9_patient044_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19314.8, + "Centroid Y µm": 23862.4, + "Num Detections": 18241, + "Num Negative": 18173, + "Num Positive": 68, + "Positive %": 0.3728, + "Num Positive per mm^2": 33.33 + } +} \ No newline at end of file diff --git a/044/InvasionFront_CD8_block6_x5_y7_patient044_0.json b/044/InvasionFront_CD8_block6_x5_y7_patient044_0.json new file mode 100644 index 0000000000000000000000000000000000000000..330342739bb637530f93c7ed50df8ebb6b2be89b --- /dev/null +++ b/044/InvasionFront_CD8_block6_x5_y7_patient044_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17290.8, + "Centroid Y µm": 17840.6, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/044/InvasionFront_CD8_block6_x6_y7_patient044_1.json 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Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/044/TumorCenter_CD3_block6_x6_y7_patient044_1.json b/044/TumorCenter_CD3_block6_x6_y7_patient044_1.json new file mode 100644 index 0000000000000000000000000000000000000000..1fa66c0affaa8e7bc045b11aba365d4b2c86230f --- /dev/null +++ b/044/TumorCenter_CD3_block6_x6_y7_patient044_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18965.0, + "Centroid Y µm": 18165.4, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/044/TumorCenter_CD8_block6_x5_y7_patient044_0.json b/044/TumorCenter_CD8_block6_x5_y7_patient044_0.json new file mode 100644 index 0000000000000000000000000000000000000000..d7b16ffcb58d03678d4bd63fe97612879b6b5f2a --- /dev/null +++ b/044/TumorCenter_CD8_block6_x5_y7_patient044_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16316.4, + 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0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/044/ops_codes.txt b/044/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/044/patient_clinical_data.json b/044/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..05333a3f3ad2de01b6c8c8ba98ce4a3143981773 --- /dev/null +++ b/044/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2018, + "age_at_initial_diagnosis": 50, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 27, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/044/patient_pathological_data.json b/044/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..e12c1dd8ba7fa88234730a64ee789acfbacc6f72 --- /dev/null +++ b/044/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "044", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT1", + "pN_stage": "pN2b", + "grading": "G3", + "hpv_association_p16": "negative", + "number_of_positive_lymph_nodes": 7.0, + "number_of_resected_lymph_nodes": 58, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R1", + "resection_status_carcinoma_in_situ": "Ris1", + "carcinoma_in_situ": "yes", + "closest_resection_margin_in_cm": "0", + "histologic_type": 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+ } +} \ No newline at end of file diff --git a/045/InvasionFront_CD3_block5_x4_y10_patient045_1.json b/045/InvasionFront_CD3_block5_x4_y10_patient045_1.json new file mode 100644 index 0000000000000000000000000000000000000000..fadef727191066180bf2db24eee4f783891ac5d3 --- /dev/null +++ b/045/InvasionFront_CD3_block5_x4_y10_patient045_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13717.7, + "Centroid Y µm": 25461.5, + "Num Detections": 21302, + "Num Negative": 18543, + "Num Positive": 2759, + "Positive %": 12.95, + "Num Positive per mm^2": 1144.3 + } +} \ No newline at end of file diff --git a/045/InvasionFront_CD8_block5_x3_y8_patient045_0.json b/045/InvasionFront_CD8_block5_x3_y8_patient045_0.json new file mode 100644 index 0000000000000000000000000000000000000000..f05e33782d697da2e9acc664e216cf2fbc901346 --- /dev/null +++ b/045/InvasionFront_CD8_block5_x3_y8_patient045_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 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0000000000000000000000000000000000000000..19b0e7726010615f98eb9a96019d4beb9ac122c9 --- /dev/null +++ b/045/TumorCenter_CD3_block5_x3_y8_patient045_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11419.0, + "Centroid Y µm": 19964.4, + "Num Detections": 23803, + "Num Negative": 18547, + "Num Positive": 5256, + "Positive %": 22.08, + "Num Positive per mm^2": 2206.7 + } +} \ No newline at end of file diff --git a/045/TumorCenter_CD3_block5_x4_y8_patient045_1.json b/045/TumorCenter_CD3_block5_x4_y8_patient045_1.json new file mode 100644 index 0000000000000000000000000000000000000000..58ef73e5a0db2b1633a477421e2c8d87ac900fb0 --- /dev/null +++ b/045/TumorCenter_CD3_block5_x4_y8_patient045_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14067.6, + "Centroid Y µm": 20089.4, + "Num Detections": 22634, + "Num Negative": 19003, + "Num Positive": 3631, + "Positive %": 16.04, + "Num Positive per mm^2": 1572.2 + } +} \ No newline at end of file diff --git a/045/TumorCenter_CD8_block5_x3_y8_patient045_0.json b/045/TumorCenter_CD8_block5_x3_y8_patient045_0.json new file mode 100644 index 0000000000000000000000000000000000000000..9682946eb4446df0ee1b055c84798826656822d0 --- /dev/null +++ b/045/TumorCenter_CD8_block5_x3_y8_patient045_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 10869.2, + "Centroid Y µm": 20189.3, + "Num Detections": 25538, + "Num Negative": 22698, + "Num Positive": 2840, + "Positive %": 11.12, + "Num Positive per mm^2": 1201.5 + } +} \ No newline at end of file diff --git a/045/TumorCenter_CD8_block5_x4_y8_patient045_1.json b/045/TumorCenter_CD8_block5_x4_y8_patient045_1.json new file mode 100644 index 0000000000000000000000000000000000000000..343cfdc5260171e4cfc2a0b2957d33bd9277e216 --- /dev/null +++ b/045/TumorCenter_CD8_block5_x4_y8_patient045_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13542.8, + "Centroid Y µm": 20064.4, + "Num Detections": 24499, + "Num Negative": 22989, + "Num Positive": 1510, + "Positive %": 6.164, + "Num Positive per mm^2": 651.9 + } +} \ No newline at end of file diff --git a/045/history_text.txt b/045/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/045/icd_codes.txt b/045/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/045/ops_codes.txt b/045/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/045/patient_clinical_data.json b/045/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..e5d6215e3392bbf900f659984ce3109c348755b6 --- /dev/null +++ b/045/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2012, + "age_at_initial_diagnosis": 51, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 56, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/045/patient_pathological_data.json b/045/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..ff993224ad16bcee806d19b89648960c173cfe85 --- /dev/null +++ b/045/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "045", + "primary_tumor_site": "Hypopharynx", + "pT_stage": "pT2", + "pN_stage": "pN0", + "grading": "G2", + "hpv_association_p16": 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index 0000000000000000000000000000000000000000..2ce30d7bfd0215612c2959168fc6fbe1de57acb7 --- /dev/null +++ b/046/InvasionFront_CD3_block16_x3_y3_patient046_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11802.8, + "Centroid Y µm": 12006.6, + "Num Detections": 18347, + "Num Negative": 17262, + "Num Positive": 1085, + "Positive %": 5.914, + "Num Positive per mm^2": 451.0 + } +} \ No newline at end of file diff --git a/046/InvasionFront_CD3_block16_x4_y3_patient046_1.json b/046/InvasionFront_CD3_block16_x4_y3_patient046_1.json new file mode 100644 index 0000000000000000000000000000000000000000..7a882f80fa210afed3b125f41c313352095785aa --- /dev/null +++ b/046/InvasionFront_CD3_block16_x4_y3_patient046_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14393.3, + "Centroid Y µm": 11970.1, + "Num Detections": 17954, + "Num Negative": 17559, + "Num Positive": 395, + "Positive %": 2.2, + "Num Positive per mm^2": 169.28 + } +} \ No newline at end of file diff --git a/046/InvasionFront_CD8_block16_x3_y3_patient046_0.json b/046/InvasionFront_CD8_block16_x3_y3_patient046_0.json new file mode 100644 index 0000000000000000000000000000000000000000..71c11f31acebbe1315ead942c07f45a242a3e641 --- /dev/null +++ b/046/InvasionFront_CD8_block16_x3_y3_patient046_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11085.3, + "Centroid Y µm": 7393.4, + "Num Detections": 19559, + "Num Negative": 18838, + "Num Positive": 721, + "Positive %": 3.686, + "Num Positive per mm^2": 299.36 + } +} \ No newline at end of file diff --git a/046/InvasionFront_CD8_block16_x4_y3_patient046_1.json b/046/InvasionFront_CD8_block16_x4_y3_patient046_1.json new file mode 100644 index 0000000000000000000000000000000000000000..b7dc09a83dde33169f55a6eeff06511e1609a906 --- /dev/null +++ b/046/InvasionFront_CD8_block16_x4_y3_patient046_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13737.0, + "Centroid Y µm": 7656.0, + "Num Detections": 20569, + "Num Negative": 20246, + "Num Positive": 323, + "Positive %": 1.57, + "Num Positive per mm^2": 138.59 + } +} \ No newline at end of file diff --git a/046/TumorCenter_CD3_block16_x3_y3_patient046_0.json b/046/TumorCenter_CD3_block16_x3_y3_patient046_0.json new file mode 100644 index 0000000000000000000000000000000000000000..4e5bb70cc06dec19ababcc1cb03943f050af9632 --- /dev/null +++ b/046/TumorCenter_CD3_block16_x3_y3_patient046_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 12293.5, + "Centroid Y µm": 7695.9, + "Num Detections": 20444, + "Num Negative": 19244, + "Num Positive": 1200, + "Positive %": 5.87, + "Num Positive per mm^2": 449.41 + } +} \ No newline at end of file diff --git a/046/TumorCenter_CD3_block16_x4_y3_patient046_1.json b/046/TumorCenter_CD3_block16_x4_y3_patient046_1.json new file mode 100644 index 0000000000000000000000000000000000000000..b8bace2cfb241999f6dfa2a51e620a18825b88f3 --- /dev/null +++ b/046/TumorCenter_CD3_block16_x4_y3_patient046_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14717.2, + "Centroid Y µm": 7820.9, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/046/TumorCenter_CD8_block16_x3_y3_patient046_0.json b/046/TumorCenter_CD8_block16_x3_y3_patient046_0.json new file mode 100644 index 0000000000000000000000000000000000000000..04e4a3c36abed36a5ee99c537ad5e0f2be6ea98a --- /dev/null +++ b/046/TumorCenter_CD8_block16_x3_y3_patient046_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11019.2, + "Centroid Y µm": 7720.9, + "Num Detections": 22311, + "Num Negative": 21096, + "Num Positive": 1215, + "Positive %": 5.446, + "Num Positive per mm^2": 463.18 + } +} \ No newline at end of file diff --git a/046/TumorCenter_CD8_block16_x4_y3_patient046_1.json b/046/TumorCenter_CD8_block16_x4_y3_patient046_1.json new file mode 100644 index 0000000000000000000000000000000000000000..de3bd770a8a49375feef21240424f59718c35cbc --- /dev/null +++ b/046/TumorCenter_CD8_block16_x4_y3_patient046_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13617.8, + "Centroid Y µm": 7670.9, + "Num Detections": 4119, + "Num Negative": 3896, + "Num Positive": 223, + "Positive %": 5.414, + "Num Positive per mm^2": 374.47 + } +} \ No newline at end of file diff --git a/046/history_text.txt b/046/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/046/icd_codes.txt b/046/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/046/ops_codes.txt b/046/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/046/patient_clinical_data.json b/046/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..df1f9d8787d8932e6ee8bec5891261840a0ee371 --- /dev/null +++ b/046/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 61, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased not tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 42, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/046/patient_pathological_data.json b/046/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..55fdddcb6746439aa97c5073bd1a76a45d5e940a --- /dev/null +++ b/046/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "046", + "primary_tumor_site": "Oral_Cavity", + "pT_stage": "pT2", + "pN_stage": "pN2b", + "grading": "G3", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 2.0, + "number_of_resected_lymph_nodes": 29, + "perinodal_invasion": "yes", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.2", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 20.0 +} \ No newline at end of file diff --git a/046/surgery_description.txt b/046/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git 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100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/047/ops_codes.txt b/047/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/047/patient_clinical_data.json b/047/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..2319451cd28c0588d7aa5a4a28a9fb83f160d00e --- /dev/null +++ b/047/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2009, + "age_at_initial_diagnosis": 47, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 24, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", 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} +} \ No newline at end of file diff --git a/048/InvasionFront_CD3_block10_x4_y8_patient048_1.json b/048/InvasionFront_CD3_block10_x4_y8_patient048_1.json new file mode 100644 index 0000000000000000000000000000000000000000..7c648e57aab6791570e552b9c61ab3ed1896c7ab --- /dev/null +++ b/048/InvasionFront_CD3_block10_x4_y8_patient048_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15092.0, + "Centroid Y µm": 26361.0, + "Num Detections": 22354, + "Num Negative": 20608, + "Num Positive": 1746, + "Positive %": 7.811, + "Num Positive per mm^2": 712.29 + } +} \ No newline at end of file diff --git a/048/InvasionFront_CD8_block10_x3_y8_patient048_0.json b/048/InvasionFront_CD8_block10_x3_y8_patient048_0.json new file mode 100644 index 0000000000000000000000000000000000000000..099751c39705eb2dfd755c2983fc670b33ed4ca3 --- /dev/null +++ b/048/InvasionFront_CD8_block10_x3_y8_patient048_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 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0000000000000000000000000000000000000000..dbb5a4b95d4e6339df530ea5fbfc8a3c8c15dc86 --- /dev/null +++ b/048/TumorCenter_CD3_block10_x3_y8_patient048_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13942.6, + "Centroid Y µm": 19814.5, + "Num Detections": 23631, + "Num Negative": 21482, + "Num Positive": 2149, + "Positive %": 9.094, + "Num Positive per mm^2": 826.71 + } +} \ No newline at end of file diff --git a/048/TumorCenter_CD3_block10_x4_y8_patient048_1.json b/048/TumorCenter_CD3_block10_x4_y8_patient048_1.json new file mode 100644 index 0000000000000000000000000000000000000000..bea347a8f132d9d9020bd8a7172412acfeaef32e --- /dev/null +++ b/048/TumorCenter_CD3_block10_x4_y8_patient048_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16516.3, + "Centroid Y µm": 19789.5, + "Num Detections": 22127, + "Num Negative": 20575, + "Num Positive": 1552, + "Positive %": 7.014, + "Num Positive per mm^2": 626.32 + } +} \ No newline at end of file diff --git a/048/TumorCenter_CD8_block10_x3_y8_patient048_0.json b/048/TumorCenter_CD8_block10_x3_y8_patient048_0.json new file mode 100644 index 0000000000000000000000000000000000000000..35a42be0d036b18e7b8c73357be015732251d22f --- /dev/null +++ b/048/TumorCenter_CD8_block10_x3_y8_patient048_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11344.0, + "Centroid Y µm": 20589.1, + "Num Detections": 22120, + "Num Negative": 16878, + "Num Positive": 5242, + "Positive %": 23.7, + "Num Positive per mm^2": 1975.1 + } +} \ No newline at end of file diff --git a/048/TumorCenter_CD8_block10_x4_y8_patient048_1.json b/048/TumorCenter_CD8_block10_x4_y8_patient048_1.json new file mode 100644 index 0000000000000000000000000000000000000000..047dc18b7430265f454fcb3b9a09e775d0a3d787 --- /dev/null +++ b/048/TumorCenter_CD8_block10_x4_y8_patient048_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13967.6, + "Centroid Y µm": 20489.2, + "Num Detections": 21457, + "Num Negative": 15594, + "Num Positive": 5863, + "Positive %": 27.32, + "Num Positive per mm^2": 2281.7 + } +} \ No newline at end of file diff --git a/048/history_text.txt b/048/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/048/icd_codes.txt b/048/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/048/ops_codes.txt b/048/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/048/patient_clinical_data.json b/048/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..39a1c93833f5b719b4df8e067a406af25a764f9e --- /dev/null +++ b/048/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 51, + "sex": "female", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 19, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/048/patient_pathological_data.json b/048/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..21946e7fd6045902912dd19d927102330a583a26 --- /dev/null +++ b/048/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "048", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT2", + "pN_stage": "pN2", + "grading": "hpv_association_p16", + "hpv_association_p16": "positive", + 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0000000000000000000000000000000000000000..aa26243632f377b3400428d320484bbd25e5ee85 --- /dev/null +++ b/049/InvasionFront_CD3_block5_x1_y6_patient049_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4097.8, + "Centroid Y µm": 15142.0, + "Num Detections": 18379, + "Num Negative": 13912, + "Num Positive": 4467, + "Positive %": 24.3, + "Num Positive per mm^2": 2194.1 + } +} \ No newline at end of file diff --git a/049/InvasionFront_CD3_block5_x2_y6_patient049_1.json b/049/InvasionFront_CD3_block5_x2_y6_patient049_1.json new file mode 100644 index 0000000000000000000000000000000000000000..a87a5620fe851d4e18c9fcda58c643b63a4ba4b8 --- /dev/null +++ b/049/InvasionFront_CD3_block5_x2_y6_patient049_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6621.5, + "Centroid Y µm": 15167.0, + "Num Detections": 24930, + "Num Negative": 19981, + "Num Positive": 4949, + "Positive %": 19.85, + "Num Positive per mm^2": 1936.8 + } +} \ No newline at end of file diff --git a/049/InvasionFront_CD8_block5_x1_y5_patient049_0.json b/049/InvasionFront_CD8_block5_x1_y5_patient049_0.json new file mode 100644 index 0000000000000000000000000000000000000000..ab5b72e956585f38f2213714a9971457601fdb06 --- /dev/null +++ b/049/InvasionFront_CD8_block5_x1_y5_patient049_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3922.9, + "Centroid Y µm": 12643.3, + "Num Detections": 19396, + "Num Negative": 16747, + "Num Positive": 2649, + "Positive %": 13.66, + "Num Positive per mm^2": 1106.0 + } +} \ No newline at end of file diff --git a/049/InvasionFront_CD8_block5_x2_y5_patient049_1.json b/049/InvasionFront_CD8_block5_x2_y5_patient049_1.json new file mode 100644 index 0000000000000000000000000000000000000000..7154362eccd4fdd5a997330a83caab68fd0da828 --- /dev/null +++ b/049/InvasionFront_CD8_block5_x2_y5_patient049_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6496.6, + "Centroid Y µm": 12668.3, + "Num Detections": 20880, + "Num Negative": 17629, + "Num Positive": 3251, + "Positive %": 15.57, + "Num Positive per mm^2": 1263.4 + } +} \ No newline at end of file diff --git a/049/TumorCenter_CD3_block5_x1_y5_patient049_0.json b/049/TumorCenter_CD3_block5_x1_y5_patient049_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c66849e0f7cbd4fbf218eb263441e8f353f9921a --- /dev/null +++ b/049/TumorCenter_CD3_block5_x1_y5_patient049_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4847.4, + "Centroid Y µm": 11643.8, + "Num Detections": 21160, + "Num Negative": 16029, + "Num Positive": 5131, + "Positive %": 24.25, + "Num Positive per mm^2": 1955.8 + } +} \ No newline at end of file diff --git a/049/TumorCenter_CD3_block5_x2_y5_patient049_1.json b/049/TumorCenter_CD3_block5_x2_y5_patient049_1.json new file mode 100644 index 0000000000000000000000000000000000000000..b9af44f8ef824c49ff86daa7659b0c42b8d9174d --- /dev/null +++ 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diff --git a/049/patient_clinical_data.json b/049/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..db32bf4f305c0655d729d4623fc36f4ab953c0ce --- /dev/null +++ b/049/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2017, + "age_at_initial_diagnosis": 71, + "sex": "female", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 14, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/049/patient_pathological_data.json b/049/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..476e230a632614a91c35d70771dc04d0f4f82662 --- /dev/null +++ b/049/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "049", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT1", + "pN_stage": "pN0", + "grading": "G2", + "hpv_association_p16": "negative", + "number_of_positive_lymph_nodes": 0.0, + "number_of_resected_lymph_nodes": 12, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 2.0 +} \ No newline at end of file diff --git a/049/surgery_description.txt b/049/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git 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%": 0.5837, + "Num Positive per mm^2": 42.73 + } +} \ No newline at end of file diff --git a/050/TumorCenter_CD3_block16_x2_y8_patient050_1.json b/050/TumorCenter_CD3_block16_x2_y8_patient050_1.json new file mode 100644 index 0000000000000000000000000000000000000000..5f48843db3d2623aa595b2c5c7a5d01dc240e07c --- /dev/null +++ b/050/TumorCenter_CD3_block16_x2_y8_patient050_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6596.5, + "Centroid Y µm": 20214.3, + "Num Detections": 11751, + "Num Negative": 11539, + "Num Positive": 212, + "Positive %": 1.804, + "Num Positive per mm^2": 107.09 + } +} \ No newline at end of file diff --git a/050/TumorCenter_CD8_block16_x1_y8_patient050_0.json b/050/TumorCenter_CD8_block16_x1_y8_patient050_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5e629da25a8cb7698be8ba31b140df531ffc7fd1 --- /dev/null +++ b/050/TumorCenter_CD8_block16_x1_y8_patient050_0.json @@ -0,0 +1,11 @@ +{ + 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--git a/050/icd_codes.txt b/050/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/050/ops_codes.txt b/050/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/050/patient_clinical_data.json b/050/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..f8d8c949e7390409c9568d397af49eb3a6f43597 --- /dev/null +++ b/050/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2012, + "age_at_initial_diagnosis": 83, + "sex": "male", + "smoking_status": "former", + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 0, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": 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"Positive %": 3.395, + "Num Positive per mm^2": 266.39 + } +} \ No newline at end of file diff --git a/051/InvasionFront_CD3_block7_x2_y5_patient051_1.json b/051/InvasionFront_CD3_block7_x2_y5_patient051_1.json new file mode 100644 index 0000000000000000000000000000000000000000..91ae1944226fe8047ed3e040548df26b99af3be1 --- /dev/null +++ b/051/InvasionFront_CD3_block7_x2_y5_patient051_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6721.4, + "Centroid Y µm": 12118.6, + "Num Detections": 19289, + "Num Negative": 18660, + "Num Positive": 629, + "Positive %": 3.261, + "Num Positive per mm^2": 267.38 + } +} \ No newline at end of file diff --git a/051/InvasionFront_CD8_block7_x1_y5_patient051_0.json b/051/InvasionFront_CD8_block7_x1_y5_patient051_0.json new file mode 100644 index 0000000000000000000000000000000000000000..6863dfb8df181e0adadaa51cc6b9e5f6ca229ff5 --- /dev/null +++ b/051/InvasionFront_CD8_block7_x1_y5_patient051_0.json @@ -0,0 +1,11 @@ +{ + 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0000000000000000000000000000000000000000..5cef443fa24a3c244c21e0b7b708a202e381ee19 --- /dev/null +++ b/051/TumorCenter_CD3_block7_x1_y5_patient051_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3723.0, + "Centroid Y µm": 12443.4, + "Num Detections": 16167, + "Num Negative": 14401, + "Num Positive": 1766, + "Positive %": 10.92, + "Num Positive per mm^2": 796.16 + } +} \ No newline at end of file diff --git a/051/TumorCenter_CD3_block7_x2_y5_patient051_1.json b/051/TumorCenter_CD3_block7_x2_y5_patient051_1.json new file mode 100644 index 0000000000000000000000000000000000000000..b381b5d117f573460b81ee6137dfff2f3802a11d --- /dev/null +++ b/051/TumorCenter_CD3_block7_x2_y5_patient051_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6296.7, + "Centroid Y µm": 12543.4, + "Num Detections": 18358, + "Num Negative": 17951, + "Num Positive": 407, + "Positive %": 2.217, + "Num Positive per mm^2": 178.99 + } +} \ No newline at end of file diff --git a/051/TumorCenter_CD8_block7_x1_y5_patient051_0.json b/051/TumorCenter_CD8_block7_x1_y5_patient051_0.json new file mode 100644 index 0000000000000000000000000000000000000000..68219fcb2bfc7adf7e9c81f71276d1ac82e3fd35 --- /dev/null +++ b/051/TumorCenter_CD8_block7_x1_y5_patient051_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3473.2, + "Centroid Y µm": 12518.4, + "Num Detections": 18284, + "Num Negative": 17517, + "Num Positive": 767, + "Positive %": 4.195, + "Num Positive per mm^2": 352.15 + } +} \ No newline at end of file diff --git a/051/TumorCenter_CD8_block7_x2_y5_patient051_1.json b/051/TumorCenter_CD8_block7_x2_y5_patient051_1.json new file mode 100644 index 0000000000000000000000000000000000000000..cd871d58442c4b507bd854748564a880bd44e329 --- /dev/null +++ b/051/TumorCenter_CD8_block7_x2_y5_patient051_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6071.8, + "Centroid Y µm": 12618.3, + "Num Detections": 19989, + "Num Negative": 19865, + "Num Positive": 124, + "Positive %": 0.6203, + "Num Positive per mm^2": 52.08 + } +} \ No newline at end of file diff --git a/051/history_text.txt b/051/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/051/icd_codes.txt b/051/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/051/ops_codes.txt b/051/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/051/patient_clinical_data.json b/051/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..d7ebe49be669d125d928860d4b835023c47759f9 --- /dev/null +++ b/051/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2014, + "age_at_initial_diagnosis": 60, + "sex": "male", + 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--git a/052/InvasionFront_CD8_block3_x1_y10_patient052_0.json b/052/InvasionFront_CD8_block3_x1_y10_patient052_0.json new file mode 100644 index 0000000000000000000000000000000000000000..98e3c579547c32eaab4d0b5052b6aa26192f250d --- /dev/null +++ b/052/InvasionFront_CD8_block3_x1_y10_patient052_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4956.0, + "Centroid Y µm": 24686.9, + "Num Detections": 12442, + "Num Negative": 11418, + "Num Positive": 1024, + "Positive %": 8.23, + "Num Positive per mm^2": 605.17 + } +} \ No newline at end of file diff --git a/052/InvasionFront_CD8_block3_x2_y10_patient052_1.json b/052/InvasionFront_CD8_block3_x2_y10_patient052_1.json new file mode 100644 index 0000000000000000000000000000000000000000..131b10aa99ca0a5230db60e0a999070efee02851 --- /dev/null +++ b/052/InvasionFront_CD8_block3_x2_y10_patient052_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7621.0, + "Centroid Y µm": 24686.9, + "Num 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at end of file diff --git a/055/InvasionFront_CD8_block13_x1_y12_patient055_0.json b/055/InvasionFront_CD8_block13_x1_y12_patient055_0.json new file mode 100644 index 0000000000000000000000000000000000000000..19d5dfdbf9a45b2f4367b58fb9e0e1f1b4ffb2cd --- /dev/null +++ b/055/InvasionFront_CD8_block13_x1_y12_patient055_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3947.9, + "Centroid Y µm": 30633.8, + "Num Detections": 18151, + "Num Negative": 17522, + "Num Positive": 629, + "Positive %": 3.465, + "Num Positive per mm^2": 272.46 + } +} \ No newline at end of file diff --git a/055/InvasionFront_CD8_block13_x2_y12_patient055_1.json b/055/InvasionFront_CD8_block13_x2_y12_patient055_1.json new file mode 100644 index 0000000000000000000000000000000000000000..5b559d93a522c07b65d16f5fb18144462c271b63 --- /dev/null +++ b/055/InvasionFront_CD8_block13_x2_y12_patient055_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6621.5, + "Centroid 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%": 9.334, + "Num Positive per mm^2": 685.11 + } +} \ No newline at end of file diff --git a/057/InvasionFront_CD3_block21_x4_y2_patient057_1.json b/057/InvasionFront_CD3_block21_x4_y2_patient057_1.json new file mode 100644 index 0000000000000000000000000000000000000000..aab98409d2516a3bd90fe4fdac4104a4216d634b --- /dev/null +++ b/057/InvasionFront_CD3_block21_x4_y2_patient057_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16716.1, + "Centroid Y µm": 15504.3, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/057/InvasionFront_CD8_block21_x3_y2_patient057_0.json b/057/InvasionFront_CD8_block21_x3_y2_patient057_0.json new file mode 100644 index 0000000000000000000000000000000000000000..add343f9f4b57e383d53a880b554e7f3845b4556 --- /dev/null +++ b/057/InvasionFront_CD8_block21_x3_y2_patient057_0.json @@ -0,0 +1,11 @@ +{ + 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a/057/TumorCenter_CD8_block21_x3_y2_patient057_0.json b/057/TumorCenter_CD8_block21_x3_y2_patient057_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5f427cd6e7bc088c88a703d22c60d5d106b6f9b8 --- /dev/null +++ b/057/TumorCenter_CD8_block21_x3_y2_patient057_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13917.6, + "Centroid Y µm": 19864.5, + "Num Detections": 22467, + "Num Negative": 22135, + "Num Positive": 332, + "Positive %": 1.478, + "Num Positive per mm^2": 131.42 + } +} \ No newline at end of file diff --git a/057/TumorCenter_CD8_block21_x4_y2_patient057_1.json b/057/TumorCenter_CD8_block21_x4_y2_patient057_1.json new file mode 100644 index 0000000000000000000000000000000000000000..19358fe3706d47aa7b0629d14678a6742ba9e0a7 --- /dev/null +++ b/057/TumorCenter_CD8_block21_x4_y2_patient057_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16741.1, + "Centroid Y µm": 19764.5, + "Num Detections": 19320, + "Num Negative": 18659, + "Num Positive": 661, + "Positive %": 3.421, + "Num Positive per mm^2": 292.11 + } +} \ No newline at end of file diff --git a/057/history_text.txt b/057/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/057/icd_codes.txt b/057/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/057/ops_codes.txt b/057/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/057/patient_clinical_data.json b/057/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..ed56596cafca3b0ed32ac4f9d7d46f2bb399f40b --- /dev/null +++ b/057/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 64, + "sex": "male", + "smoking_status": 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end of file diff --git a/058/InvasionFront_CD8_block12_x1_y1_patient058_0.json b/058/InvasionFront_CD8_block12_x1_y1_patient058_0.json new file mode 100644 index 0000000000000000000000000000000000000000..0efacf9f8b371b64dd53d070461915ad2e4a511b --- /dev/null +++ b/058/InvasionFront_CD8_block12_x1_y1_patient058_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3997.9, + "Centroid Y µm": 6571.5, + "Num Detections": 16843, + "Num Negative": 15530, + "Num Positive": 1313, + "Positive %": 7.796, + "Num Positive per mm^2": 656.02 + } +} \ No newline at end of file diff --git a/058/InvasionFront_CD8_block12_x2_y1_patient058_1.json b/058/InvasionFront_CD8_block12_x2_y1_patient058_1.json new file mode 100644 index 0000000000000000000000000000000000000000..1efdfc56b7d545532b31a8ba6532f6d6e4c6c18e --- /dev/null +++ b/058/InvasionFront_CD8_block12_x2_y1_patient058_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6721.4, + "Centroid Y µm": 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diff --git a/058/patient_clinical_data.json b/058/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..04ba53ceff59da401735c7ffdcf66832020bf304 --- /dev/null +++ b/058/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2006, + "age_at_initial_diagnosis": 73, + "sex": "male", + "smoking_status": null, + "primarily_metastasis": "no", + "survival_status": "deceased", + "survival_status_with_cause": "deceased tumor specific", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 10, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/058/patient_pathological_data.json b/058/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..4f7c12d57f5b65cdf0a1aefbebe2188c5ec83e75 --- /dev/null +++ b/058/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "058", + "primary_tumor_site": "Oral_Cavity", + "pT_stage": "pT2", + "pN_stage": "pN0", + "grading": "G2", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 0.0, + "number_of_resected_lymph_nodes": 18, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "1.2", + "histologic_type": "SCC_Conventional-NonKeratinizing", + "infiltration_depth_in_mm": 14.0 +} \ No newline at end of file diff --git a/058/surgery_description.txt b/058/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/058/surgery_report.txt b/058/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/059/InvasionFront_CD3_block3_x5_y9_patient059_0.json b/059/InvasionFront_CD3_block3_x5_y9_patient059_0.json new file mode 100644 index 0000000000000000000000000000000000000000..cc2387bd97deefce22ce16ac3cef80a62c0585a5 --- /dev/null +++ b/059/InvasionFront_CD3_block3_x5_y9_patient059_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16960.7, + "Centroid Y µm": 29015.8, + "Num Detections": 10120, + "Num Negative": 9988, + "Num Positive": 132, + "Positive %": 1.304, + "Num Positive per mm^2": 114.93 + } +} \ No newline at end of file diff --git a/059/InvasionFront_CD3_block3_x6_y9_patient059_1.json b/059/InvasionFront_CD3_block3_x6_y9_patient059_1.json new file mode 100644 index 0000000000000000000000000000000000000000..01e44edba9f88a88e9e83eb066088827c308a902 --- /dev/null +++ b/059/InvasionFront_CD3_block3_x6_y9_patient059_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19518.6, + "Centroid Y µm": 29446.3, + "Num Detections": 17448, + "Num Negative": 17106, + "Num Positive": 342, + "Positive %": 1.96, + "Num Positive per mm^2": 153.72 + } +} \ No newline at end of file diff --git a/059/InvasionFront_CD8_block3_x5_y8_patient059_0.json b/059/InvasionFront_CD8_block3_x5_y8_patient059_0.json new file mode 100644 index 0000000000000000000000000000000000000000..ceb2bc39c930ab322b6902b4e627d56a70ef3f2e --- /dev/null +++ b/059/InvasionFront_CD8_block3_x5_y8_patient059_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17465.8, + "Centroid Y µm": 19839.5, + "Num Detections": 18592, + "Num Negative": 18235, + "Num Positive": 357, + "Positive %": 1.92, + "Num Positive per mm^2": 167.36 + } +} \ No newline at end of file diff --git a/059/InvasionFront_CD8_block3_x6_y8_patient059_1.json b/059/InvasionFront_CD8_block3_x6_y8_patient059_1.json new file mode 100644 index 0000000000000000000000000000000000000000..059fa9a032a3f20ae2597d83c95e7e563fa161ca --- /dev/null +++ b/059/InvasionFront_CD8_block3_x6_y8_patient059_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 20114.3, + "Centroid Y µm": 19789.5, + "Num Detections": 19266, + "Num Negative": 18883, + "Num Positive": 383, + "Positive %": 1.988, + "Num Positive per mm^2": 172.72 + } +} \ No newline at end of file diff --git a/059/TumorCenter_CD3_block3_x5_y8_patient059_0.json b/059/TumorCenter_CD3_block3_x5_y8_patient059_0.json new file mode 100644 index 0000000000000000000000000000000000000000..7131327e4c5df33b18fc6b407102db0ad10c173b --- /dev/null +++ b/059/TumorCenter_CD3_block3_x5_y8_patient059_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15882.3, + "Centroid Y µm": 26491.9, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/059/TumorCenter_CD3_block3_x6_y8_patient059_1.json b/059/TumorCenter_CD3_block3_x6_y8_patient059_1.json new file mode 100644 index 0000000000000000000000000000000000000000..e7ec51fd451e930580bb177132d12fb3e7f0c505 --- /dev/null +++ b/059/TumorCenter_CD3_block3_x6_y8_patient059_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 18090.4, + "Centroid Y µm": 26585.9, + "Num Detections": 12112, + "Num Negative": 10072, + "Num Positive": 2040, + "Positive %": 16.84, + "Num Positive per mm^2": 1221.9 + } +} \ No newline at end of file diff --git a/059/TumorCenter_CD8_block3_x5_y8_patient059_0.json b/059/TumorCenter_CD8_block3_x5_y8_patient059_0.json new file mode 100644 index 0000000000000000000000000000000000000000..640209fb1a6d7664cbbab15bbc8242db0181c428 --- /dev/null +++ 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