|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
from __future__ import annotations |
|
|
|
|
|
import datetime |
|
|
import json |
|
|
import os |
|
|
from collections.abc import Mapping, Sequence |
|
|
from typing import IO, Any |
|
|
|
|
|
import torch |
|
|
|
|
|
from monai.config import get_config_values |
|
|
from monai.utils import JITMetadataKeys |
|
|
|
|
|
METADATA_FILENAME = "metadata.json" |
|
|
|
|
|
|
|
|
def save_net_with_metadata( |
|
|
jit_obj: torch.nn.Module, |
|
|
filename_prefix_or_stream: str | IO[Any], |
|
|
include_config_vals: bool = True, |
|
|
append_timestamp: bool = False, |
|
|
meta_values: Mapping[str, Any] | None = None, |
|
|
more_extra_files: Mapping[str, bytes] | None = None, |
|
|
) -> None: |
|
|
""" |
|
|
Save the JIT object (script or trace produced object) `jit_obj` to the given file or stream with metadata |
|
|
included as a JSON file. The Torchscript format is a zip file which can contain extra file data which is used |
|
|
here as a mechanism for storing metadata about the network being saved. The data in `meta_values` should be |
|
|
compatible with conversion to JSON using the standard library function `dumps`. The intent is this metadata will |
|
|
include information about the network applicable to some use case, such as describing the input and output format, |
|
|
a network name and version, a plain language description of what the network does, and other relevant scientific |
|
|
information. Clients can use this information to determine automatically how to use the network, and users can |
|
|
read what the network does and keep track of versions. |
|
|
|
|
|
Examples:: |
|
|
|
|
|
net = torch.jit.script(monai.networks.nets.UNet(2, 1, 1, [8, 16], [2])) |
|
|
|
|
|
meta = { |
|
|
"name": "Test UNet", |
|
|
"used_for": "demonstration purposes", |
|
|
"input_dims": 2, |
|
|
"output_dims": 2 |
|
|
} |
|
|
|
|
|
# save the Torchscript bundle with the above dictionary stored as an extra file |
|
|
save_net_with_metadata(m, "test", meta_values=meta) |
|
|
|
|
|
# load the network back, `loaded_meta` has same data as `meta` plus version information |
|
|
loaded_net, loaded_meta, _ = load_net_with_metadata("test.ts") |
|
|
|
|
|
|
|
|
Args: |
|
|
jit_obj: object to save, should be generated by `script` or `trace`. |
|
|
filename_prefix_or_stream: filename or file-like stream object, if filename has no extension it becomes `.ts`. |
|
|
include_config_vals: if True, MONAI, Pytorch, and Numpy versions are included in metadata. |
|
|
append_timestamp: if True, a timestamp for "now" is appended to the file's name before the extension. |
|
|
meta_values: metadata values to store with the object, not limited just to keys in `JITMetadataKeys`. |
|
|
more_extra_files: other extra file data items to include in bundle, see `_extra_files` of `torch.jit.save`. |
|
|
""" |
|
|
|
|
|
now = datetime.datetime.now() |
|
|
metadict = {} |
|
|
|
|
|
if include_config_vals: |
|
|
metadict.update(get_config_values()) |
|
|
metadict[JITMetadataKeys.TIMESTAMP.value] = now.astimezone().isoformat() |
|
|
|
|
|
if meta_values is not None: |
|
|
metadict.update(meta_values) |
|
|
|
|
|
json_data = json.dumps(metadict) |
|
|
|
|
|
extra_files = {METADATA_FILENAME: json_data.encode()} |
|
|
|
|
|
if more_extra_files is not None: |
|
|
extra_files.update(more_extra_files) |
|
|
|
|
|
if isinstance(filename_prefix_or_stream, str): |
|
|
filename_no_ext, ext = os.path.splitext(filename_prefix_or_stream) |
|
|
if ext == "": |
|
|
ext = ".ts" |
|
|
|
|
|
if append_timestamp: |
|
|
filename_prefix_or_stream = now.strftime(f"{filename_no_ext}_%Y%m%d%H%M%S{ext}") |
|
|
else: |
|
|
filename_prefix_or_stream = filename_no_ext + ext |
|
|
|
|
|
torch.jit.save(jit_obj, filename_prefix_or_stream, extra_files) |
|
|
|
|
|
|
|
|
def load_net_with_metadata( |
|
|
filename_prefix_or_stream: str | IO[Any], |
|
|
map_location: torch.device | None = None, |
|
|
more_extra_files: Sequence[str] = (), |
|
|
) -> tuple[torch.nn.Module, dict, dict]: |
|
|
""" |
|
|
Load the module object from the given Torchscript filename or stream, and convert the stored JSON metadata |
|
|
back to a dict object. This will produce an empty dict if the metadata file is not present. |
|
|
|
|
|
Args: |
|
|
filename_prefix_or_stream: filename or file-like stream object. |
|
|
map_location: network map location as in `torch.jit.load`. |
|
|
more_extra_files: other extra file data names to load from bundle, see `_extra_files` of `torch.jit.load`. |
|
|
Returns: |
|
|
Triple containing loaded object, metadata dict, and extra files dict containing other file data if present |
|
|
""" |
|
|
extra_files = {f: "" for f in more_extra_files} |
|
|
extra_files[METADATA_FILENAME] = "" |
|
|
|
|
|
jit_obj = torch.jit.load(filename_prefix_or_stream, map_location, extra_files) |
|
|
|
|
|
extra_files = dict(extra_files.items()) |
|
|
|
|
|
if METADATA_FILENAME in extra_files: |
|
|
json_data = extra_files[METADATA_FILENAME] |
|
|
del extra_files[METADATA_FILENAME] |
|
|
else: |
|
|
json_data = "{}" |
|
|
|
|
|
json_data_dict = json.loads(json_data) |
|
|
|
|
|
return jit_obj, json_data_dict, extra_files |
|
|
|