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from __future__ import annotations |
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from .adaptors import FunctionSignature, adaptor, apply_alias, to_kwargs |
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from .compose import Compose, OneOf, RandomOrder, SomeOf |
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from .croppad.array import ( |
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BorderPad, |
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BoundingRect, |
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CenterScaleCrop, |
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CenterSpatialCrop, |
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Crop, |
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CropForeground, |
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DivisiblePad, |
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Pad, |
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RandCropByLabelClasses, |
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RandCropByPosNegLabel, |
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RandScaleCrop, |
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RandSpatialCrop, |
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RandSpatialCropSamples, |
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RandWeightedCrop, |
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ResizeWithPadOrCrop, |
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SpatialCrop, |
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SpatialPad, |
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) |
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from .croppad.batch import PadListDataCollate |
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from .croppad.dictionary import ( |
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BorderPadd, |
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BorderPadD, |
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BorderPadDict, |
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BoundingRectd, |
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BoundingRectD, |
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BoundingRectDict, |
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CenterScaleCropd, |
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CenterScaleCropD, |
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CenterScaleCropDict, |
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CenterSpatialCropd, |
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CenterSpatialCropD, |
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CenterSpatialCropDict, |
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Cropd, |
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CropD, |
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CropDict, |
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CropForegroundd, |
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CropForegroundD, |
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CropForegroundDict, |
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DivisiblePadd, |
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DivisiblePadD, |
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DivisiblePadDict, |
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Padd, |
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PadD, |
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PadDict, |
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RandCropByLabelClassesd, |
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RandCropByLabelClassesD, |
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RandCropByLabelClassesDict, |
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RandCropByPosNegLabeld, |
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RandCropByPosNegLabelD, |
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RandCropByPosNegLabelDict, |
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RandCropd, |
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RandCropD, |
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RandCropDict, |
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RandScaleCropd, |
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RandScaleCropD, |
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RandScaleCropDict, |
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RandSpatialCropd, |
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RandSpatialCropD, |
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RandSpatialCropDict, |
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RandSpatialCropSamplesd, |
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RandSpatialCropSamplesD, |
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RandSpatialCropSamplesDict, |
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RandWeightedCropd, |
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RandWeightedCropD, |
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RandWeightedCropDict, |
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ResizeWithPadOrCropd, |
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ResizeWithPadOrCropD, |
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ResizeWithPadOrCropDict, |
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SpatialCropd, |
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SpatialCropD, |
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SpatialCropDict, |
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SpatialPadd, |
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SpatialPadD, |
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SpatialPadDict, |
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) |
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from .croppad.functional import crop_func, crop_or_pad_nd, pad_func, pad_nd |
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from .intensity.array import ( |
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AdjustContrast, |
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ClipIntensityPercentiles, |
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ComputeHoVerMaps, |
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DetectEnvelope, |
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ForegroundMask, |
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GaussianSharpen, |
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GaussianSmooth, |
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GibbsNoise, |
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HistogramNormalize, |
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IntensityRemap, |
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KSpaceSpikeNoise, |
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MaskIntensity, |
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MedianSmooth, |
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NormalizeIntensity, |
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RandAdjustContrast, |
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RandBiasField, |
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RandCoarseDropout, |
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RandCoarseShuffle, |
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RandCoarseTransform, |
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RandGaussianNoise, |
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RandGaussianSharpen, |
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RandGaussianSmooth, |
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RandGibbsNoise, |
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RandHistogramShift, |
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RandIntensityRemap, |
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RandKSpaceSpikeNoise, |
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RandRicianNoise, |
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RandScaleIntensity, |
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RandScaleIntensityFixedMean, |
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RandShiftIntensity, |
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RandStdShiftIntensity, |
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SavitzkyGolaySmooth, |
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ScaleIntensity, |
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ScaleIntensityFixedMean, |
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ScaleIntensityRange, |
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ScaleIntensityRangePercentiles, |
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ShiftIntensity, |
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StdShiftIntensity, |
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ThresholdIntensity, |
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UltrasoundConfidenceMapTransform, |
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) |
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from .intensity.dictionary import ( |
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AdjustContrastd, |
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AdjustContrastD, |
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AdjustContrastDict, |
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ClipIntensityPercentilesd, |
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ClipIntensityPercentilesD, |
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ClipIntensityPercentilesDict, |
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ComputeHoVerMapsd, |
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ComputeHoVerMapsD, |
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ComputeHoVerMapsDict, |
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ForegroundMaskd, |
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ForegroundMaskD, |
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ForegroundMaskDict, |
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GaussianSharpend, |
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GaussianSharpenD, |
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GaussianSharpenDict, |
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GaussianSmoothd, |
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GaussianSmoothD, |
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GaussianSmoothDict, |
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GibbsNoised, |
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GibbsNoiseD, |
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GibbsNoiseDict, |
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HistogramNormalized, |
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HistogramNormalizeD, |
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HistogramNormalizeDict, |
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KSpaceSpikeNoised, |
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KSpaceSpikeNoiseD, |
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KSpaceSpikeNoiseDict, |
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MaskIntensityd, |
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MaskIntensityD, |
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MaskIntensityDict, |
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MedianSmoothd, |
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MedianSmoothD, |
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MedianSmoothDict, |
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NormalizeIntensityd, |
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NormalizeIntensityD, |
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NormalizeIntensityDict, |
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RandAdjustContrastd, |
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RandAdjustContrastD, |
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RandAdjustContrastDict, |
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RandBiasFieldd, |
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RandBiasFieldD, |
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RandBiasFieldDict, |
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RandCoarseDropoutd, |
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RandCoarseDropoutD, |
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RandCoarseDropoutDict, |
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RandCoarseShuffled, |
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RandCoarseShuffleD, |
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RandCoarseShuffleDict, |
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RandGaussianNoised, |
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RandGaussianNoiseD, |
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RandGaussianNoiseDict, |
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RandGaussianSharpend, |
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RandGaussianSharpenD, |
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RandGaussianSharpenDict, |
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RandGaussianSmoothd, |
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RandGaussianSmoothD, |
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RandGaussianSmoothDict, |
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RandGibbsNoised, |
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RandGibbsNoiseD, |
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RandGibbsNoiseDict, |
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RandHistogramShiftd, |
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RandHistogramShiftD, |
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RandHistogramShiftDict, |
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RandKSpaceSpikeNoised, |
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RandKSpaceSpikeNoiseD, |
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RandKSpaceSpikeNoiseDict, |
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RandRicianNoised, |
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RandRicianNoiseD, |
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RandRicianNoiseDict, |
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RandScaleIntensityd, |
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RandScaleIntensityD, |
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RandScaleIntensityDict, |
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RandScaleIntensityFixedMeand, |
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RandScaleIntensityFixedMeanD, |
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RandScaleIntensityFixedMeanDict, |
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RandShiftIntensityd, |
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RandShiftIntensityD, |
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RandShiftIntensityDict, |
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RandStdShiftIntensityd, |
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RandStdShiftIntensityD, |
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RandStdShiftIntensityDict, |
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SavitzkyGolaySmoothd, |
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SavitzkyGolaySmoothD, |
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SavitzkyGolaySmoothDict, |
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ScaleIntensityd, |
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ScaleIntensityD, |
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ScaleIntensityDict, |
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ScaleIntensityRanged, |
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ScaleIntensityRangeD, |
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ScaleIntensityRangeDict, |
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ScaleIntensityRangePercentilesd, |
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ScaleIntensityRangePercentilesD, |
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ScaleIntensityRangePercentilesDict, |
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ShiftIntensityd, |
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ShiftIntensityD, |
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ShiftIntensityDict, |
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StdShiftIntensityd, |
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StdShiftIntensityD, |
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StdShiftIntensityDict, |
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ThresholdIntensityd, |
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ThresholdIntensityD, |
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ThresholdIntensityDict, |
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) |
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from .inverse import InvertibleTransform, TraceableTransform |
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from .inverse_batch_transform import BatchInverseTransform, Decollated, DecollateD, DecollateDict |
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from .io.array import SUPPORTED_READERS, LoadImage, SaveImage |
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from .io.dictionary import LoadImaged, LoadImageD, LoadImageDict, SaveImaged, SaveImageD, SaveImageDict |
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from .lazy.array import ApplyPending |
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from .lazy.dictionary import ApplyPendingd, ApplyPendingD, ApplyPendingDict |
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from .lazy.functional import apply_pending |
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from .lazy.utils import combine_transforms, resample |
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from .meta_utility.dictionary import ( |
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FromMetaTensord, |
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FromMetaTensorD, |
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FromMetaTensorDict, |
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ToMetaTensord, |
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ToMetaTensorD, |
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ToMetaTensorDict, |
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) |
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from .nvtx import ( |
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Mark, |
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Markd, |
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MarkD, |
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MarkDict, |
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RandMark, |
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RandMarkd, |
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RandMarkD, |
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RandMarkDict, |
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RandRangePop, |
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RandRangePopd, |
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RandRangePopD, |
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RandRangePopDict, |
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RandRangePush, |
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RandRangePushd, |
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RandRangePushD, |
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RandRangePushDict, |
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RangePop, |
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RangePopd, |
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RangePopD, |
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RangePopDict, |
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RangePush, |
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RangePushd, |
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RangePushD, |
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RangePushDict, |
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) |
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from .post.array import ( |
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Activations, |
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AsDiscrete, |
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DistanceTransformEDT, |
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FillHoles, |
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Invert, |
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KeepLargestConnectedComponent, |
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LabelFilter, |
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LabelToContour, |
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MeanEnsemble, |
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ProbNMS, |
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RemoveSmallObjects, |
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SobelGradients, |
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VoteEnsemble, |
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) |
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from .post.dictionary import ( |
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ActivationsD, |
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Activationsd, |
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ActivationsDict, |
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AsDiscreteD, |
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AsDiscreted, |
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AsDiscreteDict, |
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DistanceTransformEDTd, |
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DistanceTransformEDTD, |
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DistanceTransformEDTDict, |
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Ensembled, |
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EnsembleD, |
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EnsembleDict, |
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FillHolesD, |
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FillHolesd, |
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FillHolesDict, |
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InvertD, |
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Invertd, |
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InvertDict, |
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KeepLargestConnectedComponentD, |
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KeepLargestConnectedComponentd, |
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KeepLargestConnectedComponentDict, |
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LabelFilterD, |
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LabelFilterd, |
|
|
LabelFilterDict, |
|
|
LabelToContourD, |
|
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LabelToContourd, |
|
|
LabelToContourDict, |
|
|
MeanEnsembleD, |
|
|
MeanEnsembled, |
|
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MeanEnsembleDict, |
|
|
ProbNMSD, |
|
|
ProbNMSd, |
|
|
ProbNMSDict, |
|
|
RemoveSmallObjectsD, |
|
|
RemoveSmallObjectsd, |
|
|
RemoveSmallObjectsDict, |
|
|
SaveClassificationD, |
|
|
SaveClassificationd, |
|
|
SaveClassificationDict, |
|
|
SobelGradientsd, |
|
|
SobelGradientsD, |
|
|
SobelGradientsDict, |
|
|
VoteEnsembleD, |
|
|
VoteEnsembled, |
|
|
VoteEnsembleDict, |
|
|
) |
|
|
from .regularization.array import CutMix, CutOut, MixUp |
|
|
from .regularization.dictionary import ( |
|
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CutMixd, |
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CutMixD, |
|
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CutMixDict, |
|
|
CutOutd, |
|
|
CutOutD, |
|
|
CutOutDict, |
|
|
MixUpd, |
|
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MixUpD, |
|
|
MixUpDict, |
|
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) |
|
|
from .signal.array import ( |
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SignalContinuousWavelet, |
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SignalFillEmpty, |
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SignalRandAddGaussianNoise, |
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SignalRandAddSine, |
|
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SignalRandAddSinePartial, |
|
|
SignalRandAddSquarePulse, |
|
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SignalRandAddSquarePulsePartial, |
|
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SignalRandDrop, |
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SignalRandScale, |
|
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SignalRandShift, |
|
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SignalRemoveFrequency, |
|
|
) |
|
|
from .signal.dictionary import SignalFillEmptyd, SignalFillEmptyD, SignalFillEmptyDict |
|
|
from .smooth_field.array import ( |
|
|
RandSmoothDeform, |
|
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RandSmoothFieldAdjustContrast, |
|
|
RandSmoothFieldAdjustIntensity, |
|
|
SmoothField, |
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) |
|
|
from .smooth_field.dictionary import ( |
|
|
RandSmoothDeformd, |
|
|
RandSmoothDeformD, |
|
|
RandSmoothDeformDict, |
|
|
RandSmoothFieldAdjustContrastd, |
|
|
RandSmoothFieldAdjustContrastD, |
|
|
RandSmoothFieldAdjustContrastDict, |
|
|
RandSmoothFieldAdjustIntensityd, |
|
|
RandSmoothFieldAdjustIntensityD, |
|
|
RandSmoothFieldAdjustIntensityDict, |
|
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) |
|
|
from .spatial.array import ( |
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Affine, |
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AffineGrid, |
|
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Flip, |
|
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GridDistortion, |
|
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GridPatch, |
|
|
GridSplit, |
|
|
Orientation, |
|
|
Rand2DElastic, |
|
|
Rand3DElastic, |
|
|
RandAffine, |
|
|
RandAffineGrid, |
|
|
RandAxisFlip, |
|
|
RandDeformGrid, |
|
|
RandFlip, |
|
|
RandGridDistortion, |
|
|
RandGridPatch, |
|
|
RandRotate, |
|
|
RandRotate90, |
|
|
RandSimulateLowResolution, |
|
|
RandZoom, |
|
|
Resample, |
|
|
ResampleToMatch, |
|
|
Resize, |
|
|
Rotate, |
|
|
Rotate90, |
|
|
Spacing, |
|
|
SpatialResample, |
|
|
Zoom, |
|
|
) |
|
|
from .spatial.dictionary import ( |
|
|
Affined, |
|
|
AffineD, |
|
|
AffineDict, |
|
|
Flipd, |
|
|
FlipD, |
|
|
FlipDict, |
|
|
GridDistortiond, |
|
|
GridDistortionD, |
|
|
GridDistortionDict, |
|
|
GridPatchd, |
|
|
GridPatchD, |
|
|
GridPatchDict, |
|
|
GridSplitd, |
|
|
GridSplitD, |
|
|
GridSplitDict, |
|
|
Orientationd, |
|
|
OrientationD, |
|
|
OrientationDict, |
|
|
Rand2DElasticd, |
|
|
Rand2DElasticD, |
|
|
Rand2DElasticDict, |
|
|
Rand3DElasticd, |
|
|
Rand3DElasticD, |
|
|
Rand3DElasticDict, |
|
|
RandAffined, |
|
|
RandAffineD, |
|
|
RandAffineDict, |
|
|
RandAxisFlipd, |
|
|
RandAxisFlipD, |
|
|
RandAxisFlipDict, |
|
|
RandFlipd, |
|
|
RandFlipD, |
|
|
RandFlipDict, |
|
|
RandGridDistortiond, |
|
|
RandGridDistortionD, |
|
|
RandGridDistortionDict, |
|
|
RandGridPatchd, |
|
|
RandGridPatchD, |
|
|
RandGridPatchDict, |
|
|
RandRotate90d, |
|
|
RandRotate90D, |
|
|
RandRotate90Dict, |
|
|
RandRotated, |
|
|
RandRotateD, |
|
|
RandRotateDict, |
|
|
RandSimulateLowResolutiond, |
|
|
RandSimulateLowResolutionD, |
|
|
RandSimulateLowResolutionDict, |
|
|
RandZoomd, |
|
|
RandZoomD, |
|
|
RandZoomDict, |
|
|
ResampleToMatchd, |
|
|
ResampleToMatchD, |
|
|
ResampleToMatchDict, |
|
|
Resized, |
|
|
ResizeD, |
|
|
ResizeDict, |
|
|
Rotate90d, |
|
|
Rotate90D, |
|
|
Rotate90Dict, |
|
|
Rotated, |
|
|
RotateD, |
|
|
RotateDict, |
|
|
Spacingd, |
|
|
SpacingD, |
|
|
SpacingDict, |
|
|
SpatialResampled, |
|
|
SpatialResampleD, |
|
|
SpatialResampleDict, |
|
|
Zoomd, |
|
|
ZoomD, |
|
|
ZoomDict, |
|
|
) |
|
|
from .spatial.functional import spatial_resample |
|
|
from .traits import LazyTrait, MultiSampleTrait, RandomizableTrait, ThreadUnsafe |
|
|
from .transform import LazyTransform, MapTransform, Randomizable, RandomizableTransform, Transform, apply_transform |
|
|
from .utility.array import ( |
|
|
AddCoordinateChannels, |
|
|
AddExtremePointsChannel, |
|
|
AsChannelLast, |
|
|
CastToType, |
|
|
ClassesToIndices, |
|
|
ConvertToMultiChannelBasedOnBratsClasses, |
|
|
CuCIM, |
|
|
DataStats, |
|
|
EnsureChannelFirst, |
|
|
EnsureType, |
|
|
FgBgToIndices, |
|
|
Identity, |
|
|
ImageFilter, |
|
|
IntensityStats, |
|
|
LabelToMask, |
|
|
Lambda, |
|
|
MapLabelValue, |
|
|
RandCuCIM, |
|
|
RandIdentity, |
|
|
RandImageFilter, |
|
|
RandLambda, |
|
|
RemoveRepeatedChannel, |
|
|
RepeatChannel, |
|
|
SimulateDelay, |
|
|
SplitDim, |
|
|
SqueezeDim, |
|
|
ToCupy, |
|
|
ToDevice, |
|
|
ToNumpy, |
|
|
ToPIL, |
|
|
TorchVision, |
|
|
ToTensor, |
|
|
Transpose, |
|
|
) |
|
|
from .utility.dictionary import ( |
|
|
AddCoordinateChannelsd, |
|
|
AddCoordinateChannelsD, |
|
|
AddCoordinateChannelsDict, |
|
|
AddExtremePointsChanneld, |
|
|
AddExtremePointsChannelD, |
|
|
AddExtremePointsChannelDict, |
|
|
AsChannelLastd, |
|
|
AsChannelLastD, |
|
|
AsChannelLastDict, |
|
|
CastToTyped, |
|
|
CastToTypeD, |
|
|
CastToTypeDict, |
|
|
ClassesToIndicesd, |
|
|
ClassesToIndicesD, |
|
|
ClassesToIndicesDict, |
|
|
ConcatItemsd, |
|
|
ConcatItemsD, |
|
|
ConcatItemsDict, |
|
|
ConvertToMultiChannelBasedOnBratsClassesd, |
|
|
ConvertToMultiChannelBasedOnBratsClassesD, |
|
|
ConvertToMultiChannelBasedOnBratsClassesDict, |
|
|
CopyItemsd, |
|
|
CopyItemsD, |
|
|
CopyItemsDict, |
|
|
CuCIMd, |
|
|
CuCIMD, |
|
|
CuCIMDict, |
|
|
DataStatsd, |
|
|
DataStatsD, |
|
|
DataStatsDict, |
|
|
DeleteItemsd, |
|
|
DeleteItemsD, |
|
|
DeleteItemsDict, |
|
|
EnsureChannelFirstd, |
|
|
EnsureChannelFirstD, |
|
|
EnsureChannelFirstDict, |
|
|
EnsureTyped, |
|
|
EnsureTypeD, |
|
|
EnsureTypeDict, |
|
|
FgBgToIndicesd, |
|
|
FgBgToIndicesD, |
|
|
FgBgToIndicesDict, |
|
|
FlattenSubKeysd, |
|
|
FlattenSubKeysD, |
|
|
FlattenSubKeysDict, |
|
|
Identityd, |
|
|
IdentityD, |
|
|
IdentityDict, |
|
|
ImageFilterd, |
|
|
ImageFilterD, |
|
|
ImageFilterDict, |
|
|
IntensityStatsd, |
|
|
IntensityStatsD, |
|
|
IntensityStatsDict, |
|
|
LabelToMaskd, |
|
|
LabelToMaskD, |
|
|
LabelToMaskDict, |
|
|
Lambdad, |
|
|
LambdaD, |
|
|
LambdaDict, |
|
|
MapLabelValued, |
|
|
MapLabelValueD, |
|
|
MapLabelValueDict, |
|
|
RandCuCIMd, |
|
|
RandCuCIMD, |
|
|
RandCuCIMDict, |
|
|
RandImageFilterd, |
|
|
RandImageFilterD, |
|
|
RandImageFilterDict, |
|
|
RandLambdad, |
|
|
RandLambdaD, |
|
|
RandLambdaDict, |
|
|
RandTorchVisiond, |
|
|
RandTorchVisionD, |
|
|
RandTorchVisionDict, |
|
|
RemoveRepeatedChanneld, |
|
|
RemoveRepeatedChannelD, |
|
|
RemoveRepeatedChannelDict, |
|
|
RepeatChanneld, |
|
|
RepeatChannelD, |
|
|
RepeatChannelDict, |
|
|
SelectItemsd, |
|
|
SelectItemsD, |
|
|
SelectItemsDict, |
|
|
SimulateDelayd, |
|
|
SimulateDelayD, |
|
|
SimulateDelayDict, |
|
|
SplitDimd, |
|
|
SplitDimD, |
|
|
SplitDimDict, |
|
|
SqueezeDimd, |
|
|
SqueezeDimD, |
|
|
SqueezeDimDict, |
|
|
ToCupyd, |
|
|
ToCupyD, |
|
|
ToCupyDict, |
|
|
ToDeviced, |
|
|
ToDeviceD, |
|
|
ToDeviceDict, |
|
|
ToNumpyd, |
|
|
ToNumpyD, |
|
|
ToNumpyDict, |
|
|
ToPILd, |
|
|
ToPILD, |
|
|
ToPILDict, |
|
|
TorchVisiond, |
|
|
TorchVisionD, |
|
|
TorchVisionDict, |
|
|
ToTensord, |
|
|
ToTensorD, |
|
|
ToTensorDict, |
|
|
Transposed, |
|
|
TransposeD, |
|
|
TransposeDict, |
|
|
) |
|
|
from .utils import ( |
|
|
Fourier, |
|
|
allow_missing_keys_mode, |
|
|
attach_hook, |
|
|
check_non_lazy_pending_ops, |
|
|
compute_divisible_spatial_size, |
|
|
convert_applied_interp_mode, |
|
|
convert_pad_mode, |
|
|
convert_to_contiguous, |
|
|
copypaste_arrays, |
|
|
create_control_grid, |
|
|
create_grid, |
|
|
create_rotate, |
|
|
create_scale, |
|
|
create_shear, |
|
|
create_translate, |
|
|
distance_transform_edt, |
|
|
equalize_hist, |
|
|
extreme_points_to_image, |
|
|
generate_label_classes_crop_centers, |
|
|
generate_pos_neg_label_crop_centers, |
|
|
generate_spatial_bounding_box, |
|
|
get_extreme_points, |
|
|
get_largest_connected_component_mask, |
|
|
get_number_image_type_conversions, |
|
|
get_transform_backends, |
|
|
img_bounds, |
|
|
in_bounds, |
|
|
is_empty, |
|
|
is_positive, |
|
|
map_binary_to_indices, |
|
|
map_classes_to_indices, |
|
|
map_spatial_axes, |
|
|
print_transform_backends, |
|
|
rand_choice, |
|
|
remove_small_objects, |
|
|
rescale_array, |
|
|
rescale_array_int_max, |
|
|
rescale_instance_array, |
|
|
reset_ops_id, |
|
|
resize_center, |
|
|
resolves_modes, |
|
|
sync_meta_info, |
|
|
weighted_patch_samples, |
|
|
zero_margins, |
|
|
) |
|
|
from .utils_pytorch_numpy_unification import ( |
|
|
allclose, |
|
|
any_np_pt, |
|
|
ascontiguousarray, |
|
|
clip, |
|
|
concatenate, |
|
|
cumsum, |
|
|
floor_divide, |
|
|
in1d, |
|
|
isfinite, |
|
|
isnan, |
|
|
maximum, |
|
|
mode, |
|
|
moveaxis, |
|
|
nonzero, |
|
|
percentile, |
|
|
ravel, |
|
|
repeat, |
|
|
stack, |
|
|
unravel_index, |
|
|
where, |
|
|
) |
|
|
|