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# Copyright (c) MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
from .adaptors import FunctionSignature, adaptor, apply_alias, to_kwargs
from .compose import Compose, OneOf, RandomOrder, SomeOf
from .croppad.array import (
BorderPad,
BoundingRect,
CenterScaleCrop,
CenterSpatialCrop,
Crop,
CropForeground,
DivisiblePad,
Pad,
RandCropByLabelClasses,
RandCropByPosNegLabel,
RandScaleCrop,
RandSpatialCrop,
RandSpatialCropSamples,
RandWeightedCrop,
ResizeWithPadOrCrop,
SpatialCrop,
SpatialPad,
)
from .croppad.batch import PadListDataCollate
from .croppad.dictionary import (
BorderPadd,
BorderPadD,
BorderPadDict,
BoundingRectd,
BoundingRectD,
BoundingRectDict,
CenterScaleCropd,
CenterScaleCropD,
CenterScaleCropDict,
CenterSpatialCropd,
CenterSpatialCropD,
CenterSpatialCropDict,
Cropd,
CropD,
CropDict,
CropForegroundd,
CropForegroundD,
CropForegroundDict,
DivisiblePadd,
DivisiblePadD,
DivisiblePadDict,
Padd,
PadD,
PadDict,
RandCropByLabelClassesd,
RandCropByLabelClassesD,
RandCropByLabelClassesDict,
RandCropByPosNegLabeld,
RandCropByPosNegLabelD,
RandCropByPosNegLabelDict,
RandCropd,
RandCropD,
RandCropDict,
RandScaleCropd,
RandScaleCropD,
RandScaleCropDict,
RandSpatialCropd,
RandSpatialCropD,
RandSpatialCropDict,
RandSpatialCropSamplesd,
RandSpatialCropSamplesD,
RandSpatialCropSamplesDict,
RandWeightedCropd,
RandWeightedCropD,
RandWeightedCropDict,
ResizeWithPadOrCropd,
ResizeWithPadOrCropD,
ResizeWithPadOrCropDict,
SpatialCropd,
SpatialCropD,
SpatialCropDict,
SpatialPadd,
SpatialPadD,
SpatialPadDict,
)
from .croppad.functional import crop_func, crop_or_pad_nd, pad_func, pad_nd
from .intensity.array import (
AdjustContrast,
ClipIntensityPercentiles,
ComputeHoVerMaps,
DetectEnvelope,
ForegroundMask,
GaussianSharpen,
GaussianSmooth,
GibbsNoise,
HistogramNormalize,
IntensityRemap,
KSpaceSpikeNoise,
MaskIntensity,
MedianSmooth,
NormalizeIntensity,
RandAdjustContrast,
RandBiasField,
RandCoarseDropout,
RandCoarseShuffle,
RandCoarseTransform,
RandGaussianNoise,
RandGaussianSharpen,
RandGaussianSmooth,
RandGibbsNoise,
RandHistogramShift,
RandIntensityRemap,
RandKSpaceSpikeNoise,
RandRicianNoise,
RandScaleIntensity,
RandScaleIntensityFixedMean,
RandShiftIntensity,
RandStdShiftIntensity,
SavitzkyGolaySmooth,
ScaleIntensity,
ScaleIntensityFixedMean,
ScaleIntensityRange,
ScaleIntensityRangePercentiles,
ShiftIntensity,
StdShiftIntensity,
ThresholdIntensity,
UltrasoundConfidenceMapTransform,
)
from .intensity.dictionary import (
AdjustContrastd,
AdjustContrastD,
AdjustContrastDict,
ClipIntensityPercentilesd,
ClipIntensityPercentilesD,
ClipIntensityPercentilesDict,
ComputeHoVerMapsd,
ComputeHoVerMapsD,
ComputeHoVerMapsDict,
ForegroundMaskd,
ForegroundMaskD,
ForegroundMaskDict,
GaussianSharpend,
GaussianSharpenD,
GaussianSharpenDict,
GaussianSmoothd,
GaussianSmoothD,
GaussianSmoothDict,
GibbsNoised,
GibbsNoiseD,
GibbsNoiseDict,
HistogramNormalized,
HistogramNormalizeD,
HistogramNormalizeDict,
KSpaceSpikeNoised,
KSpaceSpikeNoiseD,
KSpaceSpikeNoiseDict,
MaskIntensityd,
MaskIntensityD,
MaskIntensityDict,
MedianSmoothd,
MedianSmoothD,
MedianSmoothDict,
NormalizeIntensityd,
NormalizeIntensityD,
NormalizeIntensityDict,
RandAdjustContrastd,
RandAdjustContrastD,
RandAdjustContrastDict,
RandBiasFieldd,
RandBiasFieldD,
RandBiasFieldDict,
RandCoarseDropoutd,
RandCoarseDropoutD,
RandCoarseDropoutDict,
RandCoarseShuffled,
RandCoarseShuffleD,
RandCoarseShuffleDict,
RandGaussianNoised,
RandGaussianNoiseD,
RandGaussianNoiseDict,
RandGaussianSharpend,
RandGaussianSharpenD,
RandGaussianSharpenDict,
RandGaussianSmoothd,
RandGaussianSmoothD,
RandGaussianSmoothDict,
RandGibbsNoised,
RandGibbsNoiseD,
RandGibbsNoiseDict,
RandHistogramShiftd,
RandHistogramShiftD,
RandHistogramShiftDict,
RandKSpaceSpikeNoised,
RandKSpaceSpikeNoiseD,
RandKSpaceSpikeNoiseDict,
RandRicianNoised,
RandRicianNoiseD,
RandRicianNoiseDict,
RandScaleIntensityd,
RandScaleIntensityD,
RandScaleIntensityDict,
RandScaleIntensityFixedMeand,
RandScaleIntensityFixedMeanD,
RandScaleIntensityFixedMeanDict,
RandShiftIntensityd,
RandShiftIntensityD,
RandShiftIntensityDict,
RandStdShiftIntensityd,
RandStdShiftIntensityD,
RandStdShiftIntensityDict,
SavitzkyGolaySmoothd,
SavitzkyGolaySmoothD,
SavitzkyGolaySmoothDict,
ScaleIntensityd,
ScaleIntensityD,
ScaleIntensityDict,
ScaleIntensityRanged,
ScaleIntensityRangeD,
ScaleIntensityRangeDict,
ScaleIntensityRangePercentilesd,
ScaleIntensityRangePercentilesD,
ScaleIntensityRangePercentilesDict,
ShiftIntensityd,
ShiftIntensityD,
ShiftIntensityDict,
StdShiftIntensityd,
StdShiftIntensityD,
StdShiftIntensityDict,
ThresholdIntensityd,
ThresholdIntensityD,
ThresholdIntensityDict,
)
from .inverse import InvertibleTransform, TraceableTransform
from .inverse_batch_transform import BatchInverseTransform, Decollated, DecollateD, DecollateDict
from .io.array import SUPPORTED_READERS, LoadImage, SaveImage
from .io.dictionary import LoadImaged, LoadImageD, LoadImageDict, SaveImaged, SaveImageD, SaveImageDict
from .lazy.array import ApplyPending
from .lazy.dictionary import ApplyPendingd, ApplyPendingD, ApplyPendingDict
from .lazy.functional import apply_pending
from .lazy.utils import combine_transforms, resample
from .meta_utility.dictionary import (
FromMetaTensord,
FromMetaTensorD,
FromMetaTensorDict,
ToMetaTensord,
ToMetaTensorD,
ToMetaTensorDict,
)
from .nvtx import (
Mark,
Markd,
MarkD,
MarkDict,
RandMark,
RandMarkd,
RandMarkD,
RandMarkDict,
RandRangePop,
RandRangePopd,
RandRangePopD,
RandRangePopDict,
RandRangePush,
RandRangePushd,
RandRangePushD,
RandRangePushDict,
RangePop,
RangePopd,
RangePopD,
RangePopDict,
RangePush,
RangePushd,
RangePushD,
RangePushDict,
)
from .post.array import (
Activations,
AsDiscrete,
DistanceTransformEDT,
FillHoles,
Invert,
KeepLargestConnectedComponent,
LabelFilter,
LabelToContour,
MeanEnsemble,
ProbNMS,
RemoveSmallObjects,
SobelGradients,
VoteEnsemble,
)
from .post.dictionary import (
ActivationsD,
Activationsd,
ActivationsDict,
AsDiscreteD,
AsDiscreted,
AsDiscreteDict,
DistanceTransformEDTd,
DistanceTransformEDTD,
DistanceTransformEDTDict,
Ensembled,
EnsembleD,
EnsembleDict,
FillHolesD,
FillHolesd,
FillHolesDict,
InvertD,
Invertd,
InvertDict,
KeepLargestConnectedComponentD,
KeepLargestConnectedComponentd,
KeepLargestConnectedComponentDict,
LabelFilterD,
LabelFilterd,
LabelFilterDict,
LabelToContourD,
LabelToContourd,
LabelToContourDict,
MeanEnsembleD,
MeanEnsembled,
MeanEnsembleDict,
ProbNMSD,
ProbNMSd,
ProbNMSDict,
RemoveSmallObjectsD,
RemoveSmallObjectsd,
RemoveSmallObjectsDict,
SaveClassificationD,
SaveClassificationd,
SaveClassificationDict,
SobelGradientsd,
SobelGradientsD,
SobelGradientsDict,
VoteEnsembleD,
VoteEnsembled,
VoteEnsembleDict,
)
from .regularization.array import CutMix, CutOut, MixUp
from .regularization.dictionary import (
CutMixd,
CutMixD,
CutMixDict,
CutOutd,
CutOutD,
CutOutDict,
MixUpd,
MixUpD,
MixUpDict,
)
from .signal.array import (
SignalContinuousWavelet,
SignalFillEmpty,
SignalRandAddGaussianNoise,
SignalRandAddSine,
SignalRandAddSinePartial,
SignalRandAddSquarePulse,
SignalRandAddSquarePulsePartial,
SignalRandDrop,
SignalRandScale,
SignalRandShift,
SignalRemoveFrequency,
)
from .signal.dictionary import SignalFillEmptyd, SignalFillEmptyD, SignalFillEmptyDict
from .smooth_field.array import (
RandSmoothDeform,
RandSmoothFieldAdjustContrast,
RandSmoothFieldAdjustIntensity,
SmoothField,
)
from .smooth_field.dictionary import (
RandSmoothDeformd,
RandSmoothDeformD,
RandSmoothDeformDict,
RandSmoothFieldAdjustContrastd,
RandSmoothFieldAdjustContrastD,
RandSmoothFieldAdjustContrastDict,
RandSmoothFieldAdjustIntensityd,
RandSmoothFieldAdjustIntensityD,
RandSmoothFieldAdjustIntensityDict,
)
from .spatial.array import (
Affine,
AffineGrid,
Flip,
GridDistortion,
GridPatch,
GridSplit,
Orientation,
Rand2DElastic,
Rand3DElastic,
RandAffine,
RandAffineGrid,
RandAxisFlip,
RandDeformGrid,
RandFlip,
RandGridDistortion,
RandGridPatch,
RandRotate,
RandRotate90,
RandSimulateLowResolution,
RandZoom,
Resample,
ResampleToMatch,
Resize,
Rotate,
Rotate90,
Spacing,
SpatialResample,
Zoom,
)
from .spatial.dictionary import (
Affined,
AffineD,
AffineDict,
Flipd,
FlipD,
FlipDict,
GridDistortiond,
GridDistortionD,
GridDistortionDict,
GridPatchd,
GridPatchD,
GridPatchDict,
GridSplitd,
GridSplitD,
GridSplitDict,
Orientationd,
OrientationD,
OrientationDict,
Rand2DElasticd,
Rand2DElasticD,
Rand2DElasticDict,
Rand3DElasticd,
Rand3DElasticD,
Rand3DElasticDict,
RandAffined,
RandAffineD,
RandAffineDict,
RandAxisFlipd,
RandAxisFlipD,
RandAxisFlipDict,
RandFlipd,
RandFlipD,
RandFlipDict,
RandGridDistortiond,
RandGridDistortionD,
RandGridDistortionDict,
RandGridPatchd,
RandGridPatchD,
RandGridPatchDict,
RandRotate90d,
RandRotate90D,
RandRotate90Dict,
RandRotated,
RandRotateD,
RandRotateDict,
RandSimulateLowResolutiond,
RandSimulateLowResolutionD,
RandSimulateLowResolutionDict,
RandZoomd,
RandZoomD,
RandZoomDict,
ResampleToMatchd,
ResampleToMatchD,
ResampleToMatchDict,
Resized,
ResizeD,
ResizeDict,
Rotate90d,
Rotate90D,
Rotate90Dict,
Rotated,
RotateD,
RotateDict,
Spacingd,
SpacingD,
SpacingDict,
SpatialResampled,
SpatialResampleD,
SpatialResampleDict,
Zoomd,
ZoomD,
ZoomDict,
)
from .spatial.functional import spatial_resample
from .traits import LazyTrait, MultiSampleTrait, RandomizableTrait, ThreadUnsafe
from .transform import LazyTransform, MapTransform, Randomizable, RandomizableTransform, Transform, apply_transform
from .utility.array import (
AddCoordinateChannels,
AddExtremePointsChannel,
AsChannelLast,
CastToType,
ClassesToIndices,
ConvertToMultiChannelBasedOnBratsClasses,
CuCIM,
DataStats,
EnsureChannelFirst,
EnsureType,
FgBgToIndices,
Identity,
ImageFilter,
IntensityStats,
LabelToMask,
Lambda,
MapLabelValue,
RandCuCIM,
RandIdentity,
RandImageFilter,
RandLambda,
RemoveRepeatedChannel,
RepeatChannel,
SimulateDelay,
SplitDim,
SqueezeDim,
ToCupy,
ToDevice,
ToNumpy,
ToPIL,
TorchVision,
ToTensor,
Transpose,
)
from .utility.dictionary import (
AddCoordinateChannelsd,
AddCoordinateChannelsD,
AddCoordinateChannelsDict,
AddExtremePointsChanneld,
AddExtremePointsChannelD,
AddExtremePointsChannelDict,
AsChannelLastd,
AsChannelLastD,
AsChannelLastDict,
CastToTyped,
CastToTypeD,
CastToTypeDict,
ClassesToIndicesd,
ClassesToIndicesD,
ClassesToIndicesDict,
ConcatItemsd,
ConcatItemsD,
ConcatItemsDict,
ConvertToMultiChannelBasedOnBratsClassesd,
ConvertToMultiChannelBasedOnBratsClassesD,
ConvertToMultiChannelBasedOnBratsClassesDict,
CopyItemsd,
CopyItemsD,
CopyItemsDict,
CuCIMd,
CuCIMD,
CuCIMDict,
DataStatsd,
DataStatsD,
DataStatsDict,
DeleteItemsd,
DeleteItemsD,
DeleteItemsDict,
EnsureChannelFirstd,
EnsureChannelFirstD,
EnsureChannelFirstDict,
EnsureTyped,
EnsureTypeD,
EnsureTypeDict,
FgBgToIndicesd,
FgBgToIndicesD,
FgBgToIndicesDict,
FlattenSubKeysd,
FlattenSubKeysD,
FlattenSubKeysDict,
Identityd,
IdentityD,
IdentityDict,
ImageFilterd,
ImageFilterD,
ImageFilterDict,
IntensityStatsd,
IntensityStatsD,
IntensityStatsDict,
LabelToMaskd,
LabelToMaskD,
LabelToMaskDict,
Lambdad,
LambdaD,
LambdaDict,
MapLabelValued,
MapLabelValueD,
MapLabelValueDict,
RandCuCIMd,
RandCuCIMD,
RandCuCIMDict,
RandImageFilterd,
RandImageFilterD,
RandImageFilterDict,
RandLambdad,
RandLambdaD,
RandLambdaDict,
RandTorchVisiond,
RandTorchVisionD,
RandTorchVisionDict,
RemoveRepeatedChanneld,
RemoveRepeatedChannelD,
RemoveRepeatedChannelDict,
RepeatChanneld,
RepeatChannelD,
RepeatChannelDict,
SelectItemsd,
SelectItemsD,
SelectItemsDict,
SimulateDelayd,
SimulateDelayD,
SimulateDelayDict,
SplitDimd,
SplitDimD,
SplitDimDict,
SqueezeDimd,
SqueezeDimD,
SqueezeDimDict,
ToCupyd,
ToCupyD,
ToCupyDict,
ToDeviced,
ToDeviceD,
ToDeviceDict,
ToNumpyd,
ToNumpyD,
ToNumpyDict,
ToPILd,
ToPILD,
ToPILDict,
TorchVisiond,
TorchVisionD,
TorchVisionDict,
ToTensord,
ToTensorD,
ToTensorDict,
Transposed,
TransposeD,
TransposeDict,
)
from .utils import (
Fourier,
allow_missing_keys_mode,
attach_hook,
check_non_lazy_pending_ops,
compute_divisible_spatial_size,
convert_applied_interp_mode,
convert_pad_mode,
convert_to_contiguous,
copypaste_arrays,
create_control_grid,
create_grid,
create_rotate,
create_scale,
create_shear,
create_translate,
distance_transform_edt,
equalize_hist,
extreme_points_to_image,
generate_label_classes_crop_centers,
generate_pos_neg_label_crop_centers,
generate_spatial_bounding_box,
get_extreme_points,
get_largest_connected_component_mask,
get_number_image_type_conversions,
get_transform_backends,
img_bounds,
in_bounds,
is_empty,
is_positive,
map_binary_to_indices,
map_classes_to_indices,
map_spatial_axes,
print_transform_backends,
rand_choice,
remove_small_objects,
rescale_array,
rescale_array_int_max,
rescale_instance_array,
reset_ops_id,
resize_center,
resolves_modes,
sync_meta_info,
weighted_patch_samples,
zero_margins,
)
from .utils_pytorch_numpy_unification import (
allclose,
any_np_pt,
ascontiguousarray,
clip,
concatenate,
cumsum,
floor_divide,
in1d,
isfinite,
isnan,
maximum,
mode,
moveaxis,
nonzero,
percentile,
ravel,
repeat,
stack,
unravel_index,
where,
)