# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from __future__ import annotations from collections.abc import Callable, Sequence import numpy as np import torch from monai.data import decollate_batch, list_data_collate from monai.engines import SupervisedEvaluator, SupervisedTrainer from monai.engines.utils import IterationEvents from monai.transforms import Compose from monai.utils.enums import CommonKeys class Interaction: """ Ignite process_function used to introduce interactions (simulation of clicks) for DeepEdit Training/Evaluation. More details about this can be found at: Diaz-Pinto et al., MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images. (2022) https://arxiv.org/abs/2203.12362 Args: deepgrow_probability: probability of simulating clicks in an iteration transforms: execute additional transformation during every iteration (before train). Typically, several Tensor based transforms composed by `Compose`. train: True for training mode or False for evaluation mode click_probability_key: key to click/interaction probability label_names: Dict of label names max_interactions: maximum number of interactions per iteration """ def __init__( self, deepgrow_probability: float, transforms: Sequence[Callable] | Callable, train: bool, label_names: None | dict[str, int] = None, click_probability_key: str = "probability", max_interactions: int = 1, ) -> None: self.deepgrow_probability = deepgrow_probability self.transforms = Compose(transforms) if not isinstance(transforms, Compose) else transforms self.train = train self.label_names = label_names self.click_probability_key = click_probability_key self.max_interactions = max_interactions def __call__(self, engine: SupervisedTrainer | SupervisedEvaluator, batchdata: dict[str, torch.Tensor]) -> dict: if batchdata is None: raise ValueError("Must provide batch data for current iteration.") if np.random.choice([True, False], p=[self.deepgrow_probability, 1 - self.deepgrow_probability]): for j in range(self.max_interactions): inputs, _ = engine.prepare_batch(batchdata) inputs = inputs.to(engine.state.device) engine.fire_event(IterationEvents.INNER_ITERATION_STARTED) engine.network.eval() with torch.no_grad(): if engine.amp: with torch.cuda.amp.autocast(): predictions = engine.inferer(inputs, engine.network) else: predictions = engine.inferer(inputs, engine.network) batchdata.update({CommonKeys.PRED: predictions}) # decollate/collate batchdata to execute click transforms batchdata_list = decollate_batch(batchdata, detach=True) for i in range(len(batchdata_list)): batchdata_list[i][self.click_probability_key] = ( (1.0 - ((1.0 / self.max_interactions) * j)) if self.train else 1.0 ) batchdata_list[i] = self.transforms(batchdata_list[i]) batchdata = list_data_collate(batchdata_list) engine.fire_event(IterationEvents.INNER_ITERATION_COMPLETED) else: # zero out input guidance channels batchdata_list = decollate_batch(batchdata, detach=True) for i in range(1, len(batchdata_list[0][CommonKeys.IMAGE])): batchdata_list[0][CommonKeys.IMAGE][i] *= 0 batchdata = list_data_collate(batchdata_list) # first item in batch only engine.state.batch = batchdata return engine._iteration(engine, batchdata) # type: ignore[arg-type]