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#!/bin/bash |
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DDPM_CONFIG_PATH="ddpm_pretraining/config/config.json" |
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SSL_CONFIG_PATH="ssl_pretraining/config/config.json" |
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DDPM_PY_PATH="ddpm_pretraining/main.py" |
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SSL_PY_PATH="ssl_pretraining/main.py" |
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TEMP_CONFIG="temp_config.json" |
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read -p "Insert the dataset name to use for the downstream task ('chest' or 'hand' or 'cephalo'): " DATASET_NAME |
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if [ "$DATASET_NAME" != "chest" ] && [ "$DATASET_NAME" != "hand" ] && [ "$DATASET_NAME" != "cephalo" ]; then |
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echo "Invalid dataset name. Please choose 'chest' or 'hand' or 'cephalo'." |
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exit 1 |
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fi |
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read -p "Insert the name of the model to be used for the pre-training task ('ddpm' or 'moco' or 'mocov2' or 'mocov3' or 'simclr' or 'simclrv2' or 'dino' or 'barlow_twins' or 'byol'): " MODEL_NAME |
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if [ "$MODEL_NAME" == "ddpm" ]; then |
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jq --arg DATASET_NAME "$DATASET_NAME" '.dataset.name = $DATASET_NAME' $DDPM_CONFIG_PATH > $TEMP_CONFIG |
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python $DDPM_PY_PATH --config $TEMP_CONFIG |
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elif [ "$MODEL_NAME" == "moco" ] || [ "$MODEL_NAME" == "mocov2" ] || [ "$MODEL_NAME" == "mocov3" ] || [ "$MODEL_NAME" == "simclr" ] || [ "$MODEL_NAME" == "simclrv2" ] || [ "$MODEL_NAME" == "dino" ] || [ "$MODEL_NAME" == "barlow_twins" ] || [ "$MODEL_NAME" == "byol" ]; then |
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read -p "Insert the name of the backbone encoder to be used for the pre-training task ('resnet18', 'resnet50', 'resnet101', 'resnet152', 'resnext50_32x4d', 'resnext101_32x8d', 'vgg11', 'vgg13', 'vgg16', 'vgg19', 'densenet121', 'densenet169', 'densenet201', 'densenet161'): " BACKBONE_ENCODER |
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if [ "$BACKBONE_ENCODER" != "resnet18" ] && [ "$BACKBONE_ENCODER" != "resnet50" ] && [ "$BACKBONE_ENCODER" != "resnet101" ] && [ "$BACKBONE_ENCODER" != "resnet152" ] && [ "$BACKBONE_ENCODER" != "resnext50_32x4d" ] && [ "$BACKBONE_ENCODER" != "resnext101_32x8d" ] && [ "$BACKBONE_ENCODER" != "vgg11" ] && [ "$BACKBONE_ENCODER" != "vgg13" ] && [ "$BACKBONE_ENCODER" != "vgg16" ] && [ "$BACKBONE_ENCODER" != "vgg19" ] && [ "$BACKBONE_ENCODER" != "densenet121" ] && [ "$BACKBONE_ENCODER" != "densenet169" ] && [ "$BACKBONE_ENCODER" != "densenet201" ] && [ "$BACKBONE_ENCODER" != "densenet161" ]; then |
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echo "Invalid backbone encoder. Please choose 'resnet18', 'resnet50', 'resnet101', 'resnet152', 'resnext50_32x4d', 'resnext101_32x8d', 'vgg11', 'vgg13', 'vgg16', 'vgg19', 'densenet121', 'densenet169', 'densenet201', 'densenet161'." |
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exit 1 |
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fi |
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jq --arg BACKBONE_ENCODER "$BACKBONE_ENCODER" --arg MODEL_NAME "$MODEL_NAME" --arg DATASET_NAME "$DATASET_NAME" '.dataset.name = $DATASET_NAME | .model.encoder = $BACKBONE_ENCODER | .model.name = $MODEL_NAME' $SSL_CONFIG_PATH > $TEMP_CONFIG |
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python $SSL_PY_PATH --config $TEMP_CONFIG |
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else |
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echo "Invalid model name. Please choose 'ddpm' or 'moco' or 'mocov2' or 'mocov3' or 'simclr' or 'simclrv2' or 'dino' or 'barlow_twins' or 'byol'." |
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exit 1 |
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fi |
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rm $TEMP_CONFIG |