Auto-upload batch data to clear storage

.gitattributes

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data/__notebook__.ipynb

@@ -72900,6 +72900,1991 @@
      },
      "metadata": {},
      "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "-> Upload thành công!\n",
+      "-> Đang xóa dữ liệu local để giải phóng bộ nhớ...\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "-> Đã làm trống thư mục. Dung lượng hiện tại: 0.00 GB\n",
+      "--------------------------------------------------\n",
+      "[8832/10000] (15.10GB) Downloading: TCGA-BRCA.b3068552-cd69-4e1f-942d-346a779fefcb.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8833/10000] (0.01GB) Downloading: TCGA-E2-A570.803922CD-3D37-47DC-8BDC-EF8F4779685A.PDF (0.21 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8834/10000] (0.01GB) Downloading: TCGA-BRCA.b3068552-cd69-4e1f-942d-346a779fefcb.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8835/10000] (0.01GB) Downloading: BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F04_780866.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8836/10000] (0.01GB) Downloading: BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F01_780814.nocnv_grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8837/10000] (0.01GB) Downloading: TCGA-BRCA.e0629d66-17b1-4abb-beff-7b459b373089.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8838/10000] (0.01GB) Downloading: nationwidechildrens.org_ssf.TCGA-E9-A22D.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8839/10000] (0.01GB) Downloading: TCGA-BRCA.49d20029-a697-4499-8ef4-e87c04dfa2dc.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8840/10000] (0.01GB) Downloading: c9a9b4f1-a383-4d4a-ad51-3b0c9efc8889_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8841/10000] (0.02GB) Downloading: c9a9b4f1-a383-4d4a-ad51-3b0c9efc8889_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8842/10000] (0.02GB) Downloading: TCGA-BRCA.29e8a47e-a20b-40c2-98dc-885a21dbf7a3.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8843/10000] (0.03GB) Downloading: TCGA-E2-A1B6-01A-21-A13E-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8844/10000] (0.03GB) Downloading: TCGA-E2-A1B6-01Z-00-DX1.8CD458BE-C4F9-4AF3-A927-18C042E9B4B7.svs (1086.40 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8845/10000] (1.09GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.nocnv_grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8846/10000] (1.09GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8847/10000] (1.09GB) Downloading: TCGA-BRCA.8ed5d79e-3f1b-497f-b9da-fde3a6798c21.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8848/10000] (1.09GB) Downloading: b9fd2038-4b38-45bd-8ef8-4cd82206ea87.wxs.aliquot_ensemble_masked.maf.gz (0.12 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8849/10000] (1.09GB) Downloading: TCGA-E2-A1B6-01A-03-TSC.f0917d61-c963-42cf-86c7-48b1e70c662d.svs (153.55 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8850/10000] (1.24GB) Downloading: TCGA-A2-A0YK-01A-31-A13D-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8851/10000] (1.24GB) Downloading: TCGA-A8-A07O-01A-01-BS1.073882c6-14ca-4b97-8992-fbfe1e9479c7.svs (498.43 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8852/10000] (1.73GB) Downloading: b24d3740-10de-4bdd-b5b7-0f0cf541537e.wgs.ASCAT.copy_number_variation.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8853/10000] (1.73GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8854/10000] (1.73GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8855/10000] (1.73GB) Downloading: cae39998-47d3-4a80-8acb-67d3a9518306.rna_seq.augmented_star_gene_counts.tsv (4.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8856/10000] (1.73GB) Downloading: TCGA-A8-A07O-01A-01-TS1.19908799-8b6d-43fb-8555-2db3071f0d31.svs (597.57 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8857/10000] (2.32GB) Downloading: TCGA-BRCA.8536ff4e-4027-4673-96b9-43f4f61a5376.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8858/10000] (2.32GB) Downloading: 9f5a0552-a0a1-4aa7-a32d-7a1951889cdd.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8859/10000] (2.32GB) Downloading: b7c49a13-6b0f-411a-940e-b35c17818aaa.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8860/10000] (2.32GB) Downloading: TCGA-BRCA.8ed5d79e-3f1b-497f-b9da-fde3a6798c21.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8861/10000] (2.33GB) Downloading: JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8862/10000] (2.33GB) Downloading: JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8863/10000] (2.33GB) Downloading: nationwidechildrens.org_clinical.TCGA-S3-AA0Z.xml (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8864/10000] (2.33GB) Downloading: TCGA-A2-A0YK-01A-02-TSB.deb9ff5b-b123-4256-99d0-48893875a2a2.svs (266.40 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8865/10000] (2.59GB) Downloading: f479919f-8309-4dc2-8297-31000ca1be6b_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8866/10000] (2.60GB) Downloading: TCGA-A2-A0YK-01A-02-BSB.f0b7203e-5c9c-4039-8e1d-cfc683d53a79.svs (131.34 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8867/10000] (2.72GB) Downloading: 90982fbe-3a05-42d0-bf79-00ef4d020483.wxs.aliquot_ensemble_masked.maf.gz (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8868/10000] (2.72GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_F12_1513226.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8869/10000] (2.72GB) Downloading: fe2569bd-19b3-4982-ade7-86a52a637b9b.methylation_array.sesame.level3betas.txt (12.55 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8870/10000] (2.74GB) Downloading: 2717b73b-fb88-4bbf-8f8c-f0c9f2ede252.mirbase21.isoforms.quantification.txt (0.43 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8871/10000] (2.74GB) Downloading: 8ae2bb09-25e1-45a4-aa17-6d8cb004bece.wxs.aliquot_ensemble_masked.maf.gz (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8872/10000] (2.74GB) Downloading: c7066edf-43fc-4bcf-bb63-ab75860d2410.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8873/10000] (2.74GB) Downloading: nationwidechildrens.org_clinical.TCGA-BH-A0C7.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8874/10000] (2.74GB) Downloading: TCGA-BH-A0C7-01B-11D-A930-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8875/10000] (2.74GB) Downloading: TCGA-EW-A1OZ-01A-11D-A898-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.21 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8876/10000] (2.74GB) Downloading: 9b2ca926-97ce-4aad-83aa-a7ff7d51cb3c_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8877/10000] (2.75GB) Downloading: TCGA-EW-A1OZ-01A-21-A17J-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8878/10000] (2.75GB) Downloading: TCGA-BRCA.406831ad-971a-438b-843b-b2e2912e8b29.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8879/10000] (2.75GB) Downloading: TCGA-EW-A1OZ-01Z-00-DX1.9639BB06-FF02-475F-A89D-773BE12721CC.svs (2049.24 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8880/10000] (4.75GB) Downloading: TCGA-BRCA.84f33e36-25f6-47a9-9fe9-85f8d4247ef2.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8881/10000] (4.75GB) Downloading: 6845a2eb-476d-4939-bebf-61cf0049fda1_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.15 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8882/10000] (4.75GB) Downloading: TCGA-BRCA.406831ad-971a-438b-843b-b2e2912e8b29.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8883/10000] (4.76GB) Downloading: cbeb48f8-eb79-4db3-b077-ba394031edee.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8884/10000] (4.76GB) Downloading: TCGA-EW-A1OZ-01A-01-TSA.5b179149-f5d2-4b79-8988-5c2fc2268cdc.svs (148.59 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8885/10000] (4.90GB) Downloading: nationwidechildrens.org_ssf.TCGA-S3-AA0Z.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8886/10000] (4.90GB) Downloading: TCGA-BH-A0C7-01Z-00-DX1.C70D358E-C48F-4F69-86CE-3218E9C95837.svs (1662.33 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8887/10000] (6.52GB) Downloading: TCGA-BRCA.f00b3a1a-5336-4540-a8e6-d731947f9ee5.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8888/10000] (6.52GB) Downloading: 28e06764-751f-4d97-9119-ea38ed7a4e3f_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8889/10000] (6.52GB) Downloading: TCGA-BRCA.f00b3a1a-5336-4540-a8e6-d731947f9ee5.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8890/10000] (6.52GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8891/10000] (6.52GB) Downloading: 184deddc-0e07-46d4-bf99-5ad82e446300.mirbase21.isoforms.quantification.txt (0.34 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8892/10000] (6.53GB) Downloading: 28e06764-751f-4d97-9119-ea38ed7a4e3f.methylation_array.sesame.level3betas.txt (0.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8893/10000] (6.53GB) Downloading: 184deddc-0e07-46d4-bf99-5ad82e446300.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8894/10000] (6.53GB) Downloading: TCGA-BRCA.bcc81b67-ecd6-442f-abc4-dd5b916bea85.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8895/10000] (6.53GB) Downloading: nationwidechildrens.org_clinical.TCGA-D8-A1XM.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8896/10000] (6.53GB) Downloading: TCGA-AN-A0FW-01Z-00-DX1.5EEDFC71-6ABE-4189-8C45-2127403A8F04.svs (453.47 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8897/10000] (6.97GB) Downloading: TCGA-BRCA.bcc81b67-ecd6-442f-abc4-dd5b916bea85.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8898/10000] (6.97GB) Downloading: TCGA-BRCA.647c33ff-55fa-43b7-91ef-eb63ab47a549.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8899/10000] (6.98GB) Downloading: TCGA-BRCA.647c33ff-55fa-43b7-91ef-eb63ab47a549.ascat3.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8900/10000] (6.98GB) Downloading: nationwidechildrens.org_ssf.TCGA-PL-A8LZ.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8901/10000] (6.98GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-A7-A2KD.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8902/10000] (6.98GB) Downloading: 13bd8590-675d-49b0-ad36-0d6026610613_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8903/10000] (6.98GB) Downloading: 9e83e31d-a0e4-4bdb-b47d-9add96e0f19f.wxs.aliquot_ensemble_masked.maf.gz (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8904/10000] (6.98GB) Downloading: TCGA-LL-A8F5-01A-21-A43F-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8905/10000] (6.98GB) Downloading: TCGA-LL-A8F5-01A-11D-A89E-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.26 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8906/10000] (6.98GB) Downloading: 0a0243b2-9148-4c68-b533-099ed1fb6ee0.wxs.aliquot_ensemble_masked.maf.gz (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8907/10000] (6.98GB) Downloading: TCGA-A7-A2KD-01A-03-TSC.CC1E46B0-7920-4F91-AE61-A9A78BF724DB.svs (171.70 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8908/10000] (7.15GB) Downloading: 7d2b6ff4-8f35-41cf-b078-3e78d0b81800.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8909/10000] (7.15GB) Downloading: TCGA-PL-A8LZ.436F3280-98C7-4FA9-BD6F-1B02CAF1D262.PDF (0.26 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8910/10000] (7.16GB) Downloading: DEVEL_p_TCGAb3_73_74_75_76_NSP_GenomeWideSNP_6_B01_1438364.nocnv_grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8911/10000] (7.16GB) Downloading: DEVEL_p_TCGAb3_73_74_75_76_NSP_GenomeWideSNP_6_B01_1438364.grch38.seg.v2.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8912/10000] (7.16GB) Downloading: HEIGH_p_TCGAb418_19_21_BCR_NSP_GenomeWideSNP_6_G02_1485642.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8913/10000] (7.16GB) Downloading: 92007d9b-7e66-4a19-87e8-28e4d3e18a33_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8914/10000] (7.16GB) Downloading: CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_C03_1039448.nocnv_grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8915/10000] (7.16GB) Downloading: TCGA-BRCA.49d20029-a697-4499-8ef4-e87c04dfa2dc.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8916/10000] (7.16GB) Downloading: TCGA-MS-A51U-01Z-00-DX1.490DE85A-ECE5-4E2A-9657-841BE6FFCCA0.svs (68.15 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8917/10000] (7.23GB) Downloading: TCGA-E2-A10F-01A-01-TS1.2e848f27-cde2-4da2-baaf-f4de637f891c.svs (85.96 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8918/10000] (7.31GB) Downloading: 467870a9-ba5d-4011-b31b-f93c1f5f46dc.mirbase21.isoforms.quantification.txt (0.34 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8919/10000] (7.31GB) Downloading: TCGA-BRCA.d220df14-d382-4b98-9c10-1df8c28808e1.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8920/10000] (7.31GB) Downloading: ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8921/10000] (7.31GB) Downloading: nationwidechildrens.org_clinical.TCGA-MS-A51U.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8922/10000] (7.31GB) Downloading: TCGA-E2-A10F-01A-11D-A894-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8923/10000] (7.31GB) Downloading: nationwidechildrens.org_ssf.TCGA-E2-A10F.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8924/10000] (7.31GB) Downloading: TCGA-A7-A2KD-01A-31D-A89B-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.54 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8925/10000] (7.31GB) Downloading: 65c85bfd-ab3b-49b9-b84d-7bd1ed25bd87_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8926/10000] (7.32GB) Downloading: ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8927/10000] (7.32GB) Downloading: MOHEL_p_TCGA_271_274_275_N_GenomeWideSNP_6_C02_1320298.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8928/10000] (7.32GB) Downloading: 71f102d5-7d96-439b-961e-409c30c7d788.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8929/10000] (7.32GB) Downloading: e516db41-ec72-494d-96ed-06df85a56fbb_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8930/10000] (7.33GB) Downloading: TCGA-BRCA.49d20029-a697-4499-8ef4-e87c04dfa2dc.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8931/10000] (7.33GB) Downloading: 5d96c14c-7c43-40a1-ba9a-b482a0ad00ee.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8932/10000] (7.34GB) Downloading: 65c85bfd-ab3b-49b9-b84d-7bd1ed25bd87_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8933/10000] (7.34GB) Downloading: TCGA-MS-A51U-01A-21-A321-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8934/10000] (7.34GB) Downloading: TCGA-MS-A51U-01A-03-TSC.F21253C2-5C95-4070-8A96-7A0DEA9EF563.svs (184.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8935/10000] (7.52GB) Downloading: TCGA-A7-A2KD-01A-41-A24A-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8936/10000] (7.52GB) Downloading: TCGA-A7-A2KD.3C301346-4594-4071-A754-04F8B3BE894C.PDF (0.20 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8937/10000] (7.52GB) Downloading: TCGA-MS-A51U.58D54D1A-3A8D-40DD-A643-846CAF242494.PDF (0.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8938/10000] (7.52GB) Downloading: e516db41-ec72-494d-96ed-06df85a56fbb.methylation_array.sesame.level3betas.txt (12.50 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8939/10000] (7.54GB) Downloading: e516db41-ec72-494d-96ed-06df85a56fbb_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8940/10000] (7.54GB) Downloading: TCGA-BRCA.d220df14-d382-4b98-9c10-1df8c28808e1.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8941/10000] (7.54GB) Downloading: 697cb422-6fda-499a-b808-9ca2357b9b51.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8942/10000] (7.55GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_C07_1513320.grch38.seg.v2.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8943/10000] (7.55GB) Downloading: 34a1c36b-9281-4b79-af4c-068c9887a796.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8944/10000] (7.55GB) Downloading: TCGA-BRCA.54351c40-70e3-4afb-aa2a-6349a0b843ec.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8945/10000] (7.55GB) Downloading: TCGA-E2-A1LS-11A-01-TSA.ed975f67-163e-4061-acf0-7e7149b29561.svs (57.21 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8946/10000] (7.61GB) Downloading: 49b13df5-de30-4678-9afe-99f000a78636.methylation_array.sesame.level3betas.txt (12.40 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8947/10000] (7.62GB) Downloading: 62e3b233-7858-43de-879c-7b4cd309a3d2.methylation_array.sesame.level3betas.txt (12.45 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8948/10000] (7.63GB) Downloading: ba8a9dc0-72f4-4e7d-84d2-6c66abe37bad_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8949/10000] (7.64GB) Downloading: 87ffeb15-10a1-4e6f-9e9e-413720b00873.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8950/10000] (7.64GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_C07_1513320.nocnv_grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8951/10000] (7.64GB) Downloading: 49b13df5-de30-4678-9afe-99f000a78636_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8952/10000] (7.65GB) Downloading: TCGA-E2-A1LS-11A-03-TSC.70f17b29-2748-497f-a86f-5d9879ebca65.svs (55.60 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8953/10000] (7.70GB) Downloading: d3c970fc-d6b1-4cdf-bcb5-e7a7394528c8.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8954/10000] (7.70GB) Downloading: nationwidechildrens.org_clinical.TCGA-S3-AA14.xml (0.10 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8955/10000] (7.70GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-E2-A1LS.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8956/10000] (7.70GB) Downloading: TCGA-BRCA.54351c40-70e3-4afb-aa2a-6349a0b843ec.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8957/10000] (7.70GB) Downloading: TCGA-S3-AA14-01A-01-TS1.8A693383-EEAF-4F83-9FA1-8F59AB8B619B.svs (157.57 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8958/10000] (7.86GB) Downloading: TCGA-S3-AA14.F4B87B89-A066-4BE9-88C9-60C7FB5BF373.PDF (0.36 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8959/10000] (7.86GB) Downloading: TCGA-E2-A1LS-01A-01-TSA.ab745fbc-dd5a-47f7-b60e-9533e52465e6.svs (129.57 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8960/10000] (7.98GB) Downloading: TCGA-E2-A1LS-01Z-00-DX1.9a43a58a-df40-4375-8456-ef0071bc9eb9.svs (713.49 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8961/10000] (8.68GB) Downloading: 49b13df5-de30-4678-9afe-99f000a78636_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8962/10000] (8.69GB) Downloading: 508f1179-38e7-4ece-aabe-2c0c654f52d3.mirbase21.isoforms.quantification.txt (0.44 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8963/10000] (8.69GB) Downloading: 01f6286b-8422-4f16-bec3-871c86396790.rna_seq.augmented_star_gene_counts.tsv (4.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8964/10000] (8.69GB) Downloading: MOHEL_p_TCGA_271_274_275_N_GenomeWideSNP_6_A09_1320368.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8965/10000] (8.69GB) Downloading: nationwidechildrens.org_ssf.TCGA-LL-A50Y.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8966/10000] (8.69GB) Downloading: 62e3b233-7858-43de-879c-7b4cd309a3d2_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8967/10000] (8.70GB) Downloading: b6df0d7c-1c41-4b7d-8685-ce6fba4e7ab3.rna_seq.augmented_star_gene_counts.tsv (4.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8968/10000] (8.71GB) Downloading: SHOUT_p_TCGAb_319_20_21_22_NSP_GenomeWideSNP_6_H05_1365070.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8969/10000] (8.71GB) Downloading: TCGA-LL-A6FQ-01A-01-TS1.D2E1CF23-7EC9-4BDF-9C1A-4C3342EA23C4.svs (198.95 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8970/10000] (8.90GB) Downloading: TCGA-BRCA.ae249200-498e-4044-9aa2-fa9b8c3daa7e.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8971/10000] (8.90GB) Downloading: TCGA-LL-A50Y-01A-11D-A89D-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8972/10000] (8.90GB) Downloading: TCGA-LL-A50Y.C3BD4B5F-0FB9-4B22-B8FE-9D689660B5E9.PDF (0.32 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8973/10000] (8.90GB) Downloading: TCGA-LL-A6FQ-01A-11D-A89E-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8974/10000] (8.90GB) Downloading: 7e599924-fcca-4de9-bd69-446636ceacf3.mirbase21.isoforms.quantification.txt (0.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8975/10000] (8.90GB) Downloading: nationwidechildrens.org_ssf.TCGA-LL-A6FQ.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8976/10000] (8.90GB) Downloading: SHOUT_p_TCGAb_319_20_21_22_NSP_GenomeWideSNP_6_H04_1365076.grch38.seg.v2.txt (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8977/10000] (8.90GB) Downloading: TCGA-LL-A50Y-01Z-00-DX1.7F08413F-2C59-4322-9296-84F8CD3DF619.svs (860.39 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8978/10000] (9.74GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-LL-A50Y.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8979/10000] (9.74GB) Downloading: TCGA-BRCA.1cfb1bb1-082b-4fda-a30a-ad5189c7602b.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8980/10000] (9.75GB) Downloading: DLP_REDO_FROM_MOHEL_B02.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8981/10000] (9.75GB) Downloading: e20e6786-8212-4d81-8480-f44684f0d603_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8982/10000] (9.75GB) Downloading: 7c761c25-8f9e-4c13-813b-c0575a427714.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8983/10000] (9.75GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-LL-A6FQ.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8984/10000] (9.75GB) Downloading: TCGA-BRCA.ae249200-498e-4044-9aa2-fa9b8c3daa7e.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8985/10000] (9.76GB) Downloading: 62ba910e-5fa9-4e8b-a014-ad8e96db6f50.wxs.aliquot_ensemble_masked.maf.gz (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8986/10000] (9.76GB) Downloading: TCGA-BRCA.ae249200-498e-4044-9aa2-fa9b8c3daa7e.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8987/10000] (9.76GB) Downloading: TCGA-BRCA.1cfb1bb1-082b-4fda-a30a-ad5189c7602b.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8988/10000] (9.76GB) Downloading: e682e28e-0611-4e92-899c-637fde17423d.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8989/10000] (9.76GB) Downloading: TCGA-BRCA.4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8990/10000] (9.76GB) Downloading: TCGA-BH-A0AY-11A-02-TSB.87c30c08-4771-4bf2-8204-d077c69d18e1.svs (75.18 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8991/10000] (9.84GB) Downloading: TCGA-BH-A0AY-01A-02-TSB.06ebda0b-2dd5-4116-9f51-c3a0ad9fb8bb.svs (291.90 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8992/10000] (10.12GB) Downloading: 7bac4211-90ac-4564-95e2-4243fd34577a.mirbase21.isoforms.quantification.txt (0.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8993/10000] (10.12GB) Downloading: TCGA-BRCA.4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8994/10000] (10.13GB) Downloading: bb7cd55a-a50a-40a2-a779-49c12e823ea5_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8995/10000] (10.13GB) Downloading: TCGA-BRCA.9f9702c2-7a67-48fd-aacf-93531102e1f7.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8996/10000] (10.13GB) Downloading: 932ce08a-704d-4fa7-80ab-6acbad7a4565.methylation_array.sesame.level3betas.txt (12.39 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8997/10000] (10.14GB) Downloading: TCGA-D8-A1XM-01Z-00-DX1.5F6A140E-5D20-45F6-B76F-0F98AB27AD08.svs (864.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8998/10000] (10.98GB) Downloading: bb7cd55a-a50a-40a2-a779-49c12e823ea5.methylation_array.sesame.level3betas.txt (0.73 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8999/10000] (10.98GB) Downloading: JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9000/10000] (10.98GB) Downloading: TCGA-BRCA.9f9702c2-7a67-48fd-aacf-93531102e1f7.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9001/10000] (10.98GB) Downloading: TCGA-BRCA.9f9702c2-7a67-48fd-aacf-93531102e1f7.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9002/10000] (10.99GB) Downloading: TCGA-AR-A1AK.F4DBFC71-9CD0-41C3-9F20-77FA0605D4A8.PDF (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9003/10000] (10.99GB) Downloading: 6e5c8485-2f3b-4a2a-bba7-35a6bf8f8ddb_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9004/10000] (10.99GB) Downloading: TCGA-AR-A1AK-01A-02-TSB.4cd7ad23-1a24-4289-a684-27e2b5e5e8df.svs (304.49 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9005/10000] (11.29GB) Downloading: TCGA-D8-A1XM.7E48315C-3717-40DB-8773-71D070AFC47B.PDF (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9006/10000] (11.29GB) Downloading: JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9007/10000] (11.29GB) Downloading: TCGA-BRCA.4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9008/10000] (11.30GB) Downloading: HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9009/10000] (11.30GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9010/10000] (11.30GB) Downloading: nationwidechildrens.org_ssf.TCGA-AN-A0XS.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9011/10000] (11.30GB) Downloading: TCGA-BRCA.4104df00-1af0-40be-867d-ba794e075ae7.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9012/10000] (11.30GB) Downloading: EMMER_p_8TCGA_Mx_242_238_N_GenomeWideSNP_6_A03_1244878.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9013/10000] (11.30GB) Downloading: ec572229-c704-465d-97c0-ddfb7a73295e_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9014/10000] (11.30GB) Downloading: RAMIE_p_6TCGA_250_232_4_236_N_GenomeWideSNP_6_F09_1245196.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9015/10000] (11.30GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-E9-A3X8.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9016/10000] (11.30GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-B6-A3ZX.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9017/10000] (11.30GB) Downloading: ce94126e-a0fe-42ec-8b8f-6391d4480b03.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9018/10000] (11.30GB) Downloading: TCGA-BRCA.4104df00-1af0-40be-867d-ba794e075ae7.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9019/10000] (11.30GB) Downloading: nationwidechildrens.org_clinical.TCGA-E9-A3X8.xml (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9020/10000] (11.30GB) Downloading: c271657b-1e02-4655-9df5-2f01127cc068_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9021/10000] (11.30GB) Downloading: TCGA-BRCA.e753e2a7-4812-4ba1-8e21-7b4dff099d40.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9022/10000] (11.31GB) Downloading: ea1ff936-0327-419f-b104-008511b8af5d.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9023/10000] (11.31GB) Downloading: TCGA-BRCA.e753e2a7-4812-4ba1-8e21-7b4dff099d40.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9024/10000] (11.31GB) Downloading: 05598e26-6d70-4c25-999c-54dd6965ae0d.mirbase21.isoforms.quantification.txt (0.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9025/10000] (11.31GB) Downloading: TCGA-AN-A0G0-01A-01-TS1.35437324-f765-4522-aea3-c564491b948f.svs (591.68 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9026/10000] (11.89GB) Downloading: TCGA-BRCA.ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9027/10000] (11.89GB) Downloading: nationwidechildrens.org_ssf.TCGA-E9-A3X8.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9028/10000] (11.89GB) Downloading: RAMIE_p_6TCGA_250_232_4_236_N_GenomeWideSNP_6_F09_1245196.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9029/10000] (11.89GB) Downloading: TCGA-AN-A0G0.08519263-5ADD-4BA3-9BC6-C737ACA7DFE4.PDF (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9030/10000] (11.89GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9031/10000] (11.89GB) Downloading: TCGA-AR-A1AP-01A-11D-A896-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.12 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9032/10000] (11.89GB) Downloading: dda6c656-00c7-4878-9eb1-2068d038ab06.methylation_array.sesame.level3betas.txt (12.57 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9033/10000] (11.90GB) Downloading: TCGA-E9-A3X8-01A-31D-A89C-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9034/10000] (11.90GB) Downloading: TCGA-BRCA.ebef629e-e465-4ef3-84db-81ff8522b7f9.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9035/10000] (11.91GB) Downloading: bef84807-a251-4841-b7bf-69c9de854dde.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9036/10000] (11.91GB) Downloading: 05598e26-6d70-4c25-999c-54dd6965ae0d.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9037/10000] (11.91GB) Downloading: TCGA-BRCA.81e9397d-c246-4d14-a6e9-f3e068e8c43f.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9038/10000] (11.91GB) Downloading: TCGA-BRCA.ebef629e-e465-4ef3-84db-81ff8522b7f9.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9039/10000] (11.91GB) Downloading: CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E04_1039430.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9040/10000] (11.91GB) Downloading: TCGA-AN-A0AJ-01Z-00-DX1.74EE47B0-FE27-44CF-9355-C738DE1BD017.svs (1424.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9041/10000] (13.30GB) Downloading: 7e09b589-1395-4a71-9842-de4bbf4ea83c.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9042/10000] (13.30GB) Downloading: 124a1ed7-5fdc-4e61-9d97-60e62b469d63.methylation_array.sesame.level3betas.txt (12.53 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9043/10000] (13.31GB) Downloading: e1322296-d871-4bbf-99ba-0b7b3474f91f.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9044/10000] (13.31GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-C8-A3M7.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9045/10000] (13.31GB) Downloading: TCGA-A2-A0T1-01A-02-BSB.3bba2447-a52a-4ed3-88b5-c91124ecbcac.svs (216.86 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9046/10000] (13.52GB) Downloading: HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.nocnv_grch38.seg.v2.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9047/10000] (13.52GB) Downloading: TCGA-BRCA.a972d2c7-e885-4dfe-b56c-d0468d154419.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9048/10000] (13.53GB) Downloading: TCGA-AN-A0AJ-01A-01-TSA.c21f9dd1-b47c-406f-9ad6-6969bd6f3246.svs (154.33 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9049/10000] (13.68GB) Downloading: 7338f263-0842-4c79-9363-84a67a8e5a1a.mirbase21.isoforms.quantification.txt (0.33 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9050/10000] (13.68GB) Downloading: TCGA-AN-A0AJ.6E2365F3-0875-4949-8409-7E26BBCDE700.PDF (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9051/10000] (13.68GB) Downloading: TCGA-AN-A0AJ-01A-21-A13B-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9052/10000] (13.68GB) Downloading: e88f0201-1dac-4c96-bdd4-8a1d9f0671b3_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9053/10000] (13.68GB) Downloading: SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.nocnv_grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9054/10000] (13.68GB) Downloading: TCGA-A2-A0T1-01A-11-A13D-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9055/10000] (13.68GB) Downloading: c7a9387e-a606-4603-8407-3c137264920a_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9056/10000] (13.69GB) Downloading: nationwidechildrens.org_ssf.TCGA-BH-A0DV.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9057/10000] (13.69GB) Downloading: 2100a159-27a6-47f2-a2f2-58f5343e88b0.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9058/10000] (13.69GB) Downloading: TCGA-A2-A0T1-01Z-00-DX1.CD1E9C46-18A3-466B-AA0B-24F3055FA851.svs (1034.33 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9059/10000] (14.70GB) Downloading: TCGA-BRCA.e8889068-b216-4662-816f-b8e712b61ec7.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9060/10000] (14.70GB) Downloading: TCGA-BRCA.07d13cdb-332c-4bd8-82f6-8655881cea74.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9061/10000] (14.71GB) Downloading: TCGA-BH-A0DV-11A-02-TSB.5f525dec-2f6e-4dd5-86ca-e46e615d0d6a.svs (193.51 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9062/10000] (14.90GB) Downloading: JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9063/10000] (14.90GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9064/10000] (14.90GB) Downloading: TCGA-BRCA.5b44486e-95e0-4505-9c39-bbd1515f155b.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9065/10000] (14.90GB) Downloading: nationwidechildrens.org_ssf.TCGA-A2-A0T1.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9066/10000] (14.90GB) Downloading: TCGA-BH-A0DV.3A0E1EF6-B234-46EC-BD15-95B5FAB06D45.PDF (0.10 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9067/10000] (14.90GB) Downloading: nationwidechildrens.org_clinical.TCGA-A2-A0T1.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9068/10000] (14.90GB) Downloading: 2cd7c54d-b120-43b5-8b04-385a8735e3eb.mirbase21.isoforms.quantification.txt (0.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9069/10000] (14.90GB) Downloading: SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.grch38.seg.v2.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9070/10000] (14.90GB) Downloading: c7a9387e-a606-4603-8407-3c137264920a_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9071/10000] (14.90GB) Downloading: f1ba75ac-5ac9-47c1-b9a9-7c6e69cfb5f9.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[9072/10000] (14.90GB) Downloading: TCGA-A2-A0T0-01A-02-BSB.dc5e2a55-4bc6-4655-b86e-5aeb369f05c9.svs (611.38 MB)... "
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "It seems you are trying to upload a large folder at once. This might take some time and then fail if the folder is too large. For such cases, it is recommended to upload in smaller batches or to use `HfApi().upload_large_folder(...)`/`hf upload-large-folder` instead. For more details, check out https://huggingface.co/docs/huggingface_hub/main/en/guides/upload#upload-a-large-folder.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "\n",
+      "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n",
+      "CẢNH BÁO: Dung lượng đã đạt giới hạn (15.50 GB).\n",
+      "Đang tiến hành upload lên Hugging Face và giải phóng bộ nhớ...\n",
+      "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n",
+      "\n"
+     ]
+    },
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "74e7c0e545bd41cb8e905fe72e5b889b",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "Processing Files (0 / 0): |          |  0.00B /  0.00B            "
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "0cfac1b3e6774d1cb93c063b57710dfb",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "New Data Upload: |          |  0.00B /  0.00B            "
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
     }
    ],
    "source": [

data/gdc_data_organized/02bed00f-bef7-4fb7-b243-540354990e45/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,580 @@
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data/gdc_data_organized/02bed00f-bef7-4fb7-b243-540354990e45/TCGA-A2-A0T1-01A-02-BSB.3bba2447-a52a-4ed3-88b5-c91124ecbcac.svs

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data/gdc_data_organized/02bed00f-bef7-4fb7-b243-540354990e45/TCGA-A2-A0T1-01A-11-A13D-20_RPPA_data.tsv

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+AGID00101	883	sc-1019	Old	1433ZETA	0.62513
+AGID00001	2	9452	Old	4EBP1	-0.30948
+AGID00002	3	9456	Old	4EBP1_pS65	0.20584
+AGID00003	6	9459	Old	4EBP1_pT37T46	0.12281
+AGID00443	8	9455	Old	4EBP1_pT70	-0.1445
+AGID00120	985	4937	Old	53BP1	-0.2693
+AGID00004	13	3661	Old	ACC_pS79	1.8571
+AGID00005	14	1768-1/ab45174	Old	ACC1	1.5798
+AGID00408	2372	3658	Set163	AceCS1	-0.528505123284864
+AGID00473	1182	5335	Old	ACETYLATUBULINLYS40	0.1133
+AGID00404	2367	9189	Set163	ACSL1	0.318635345421197
+AGID02144	2450	PA5-27081	Old	ACVRL1	-0.043933
+AGID00186	1198	ab88574	Old	ADAR1	-0.32272
+AGID00146	1084	4691	Old	AKT	0.92916
+AGID00028	230	9271	Old	AKT_pS473	-0.64252
+AGID00170	1154	2965	Old	AKT_pT308	-0.83631
+AGID00316	1800	3063	Set163	Akt2	0.0373703867760907
+AGID00347	2009	8599	Set163	Akt2_pS474	-0.397615175478834
+AGID02215	2577	ab195377	Set163	ALKBH5	-0.12878982501502
+AGID00498	924	CA1030	Old	ALPHACATENIN	NA
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+AGID00236	1351	ab129081	Set163	AMPK-a2_pS345	0.168140291953559
+AGID00006	39	2532	Old	AMPKALPHA	-0.44211
+AGID00007	40	2535	Old	AMPKALPHA_pT172	-0.14569
+AGID00193	1208	610066	Old	ANNEXIN1	0.20219
+AGID00166	1142	610668	Old	ANNEXINVII	-0.017624
+AGID00371	756	1852-1/ab52615	Old	AR	0.3832
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+AGID00260	1053	sc-32761	Old	ARID1A	0.040777
+AGID00264	1560	HPA029318	Old	ASNS	0.003951
+AGID00276	1612	3415	Set163	Atg3	-0.0229446781458063
+AGID00309	1775	13507	Set163	Atg4B	-0.305065131810573
+AGID00310	1776	12994	Set163	Atg5	-0.000934706148950966
+AGID00277	1613	8558	Set163	Atg7	0.425425384930586
+AGID00242	1363	2873	Old	ATM	0.25061
+AGID02142	2447	13050	Set163	ATM_pS1981	-0.214739758784811
+AGID00217	1289	ab14748	Set163	ATP5A	0.0310647415514723
+AGID02145	2451	PA5-43776	Set163	ATP5H	0.123190361302931
+AGID02150	2456	13934	Set163	ATR	0.235002349987801
+AGID00315	1795	ab178407	Set163	ATR_pS428	0.142399132457322
+AGID00268	1569	ab97508	Set163	ATRX	-0.310367252839387
+AGID00391	2332	14475	Set163	Aurora-A	0.0803353849305862
+AGID00392	2333	2914	Set163	Aurora-ABC_pT288_pT232_pT198	0.0232953948425906
+AGID02195	2512	MA5-27890	Set163	Aurora-B	-0.137440921053609
+AGID00215	1271	8661	Old	AXL	0.50107
+AGID02143	2449	8457	Set163	b-Actin	0.347865119177975
+AGID00179	1170	9565	Set163	b-Catenin_pT41_S45	0.0765603899992246
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+AGID00302	1726	14572	Set163	B7-H4	-0.126579949781496
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+AGID00433	80	M0887	Old	BCL2	-0.33571
+AGID00219	1299	PAB8528	Old	BCL2A1	0.12764
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+AGID00221	1311	610978	Set163	BiP-GRP78	0.391829828965971
+AGID00373	2194	07-507	Set163	BMK1-Erk5_pT218_Y220	0.073065418580085
+AGID00355	92	1647/ab33899	Old	BRAF	-0.11068
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+AGID00168	1146	2865	Set163	c-Abl_pY412	-0.0391253470327087
+AGID00278	1615	3130	Set163	c-IAP2	0.104120276149804
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+AGID00358	2100	ab76000	Set163	CD134	-0.136746052586866
+AGID00303	1737	826701	Set163	CD171	2.9983853624033
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+AGID00115	937	611016	Old	CD49B	-0.2997
+AGID02171	2482	91882	Set163	CD86	-0.24933462574388
+AGID00329	1873	4688	Set163	cdc25C	-0.18887960324259
+AGID00227	1332	4651	Set163	Cdc42	0.310555166589236
+AGID00422	2396	3387	Set163	Cdc6	-0.146454730062527
+AGID00501	1007	9112	Old	CDK1	-0.27614
+AGID00293	1658	ab32384	Set163	CDK1_pT14	0.0374953922086316
+AGID00314	1783	4539	Old	CDK1_pY15	-0.032306
+AGID00423	2397	8064	Set163	CDT1	-0.233480061551457
+AGID02101	2348	15102	Set163	cGAS	0.0133353895053572
+AGID00447	2410	13460	Set163	CHD1L	-0.476306444561299
+AGID00189	1203	2360	Old	CHK1	-0.041946
+AGID00234	1348	ab79758	Old	CHK1_pS296	0.06649
+AGID00107	903	2348	Old	CHK1_pS345	-0.13136
+AGID00018	146	3440	Old	CHK2	-0.33129
+AGID00019	147	2197	Old	CHK2_pT68	0.15488
+AGID00527	2078	4952	Old	CIAP	0.1744
+AGID00350	2018	3793	Set163	CIITA	-0.00643461153436354
+AGID00434	155	9164	Old	CJUN_pS73	0.51479
+AGID00020	157	1522-1/ab32363	Old	CKIT	0.53945
+AGID00400	852	NB100-91714	Old	CLAUDIN7	0.4754
+AGID00466	726	3127	Old	CMET	0.066132
+AGID00079	727	3129	Old	CMET_pY1235	0.052445
+AGID00167	161	9402	Old	CMYC	-0.092871
+AGID00292	1656	11130-1-AP	Old	COG3	0.30413
+AGID00021	171	sc-20649	Old	COLLAGENVI	0.28172
+AGID00141	1069	459230	Old	COMPLEXIISUBUNIT30	NA
+AGID00267	1568	3512	Set163	Connexin-43	0.637435119177975
+AGID00269	1571	6434	Set163	Coup-TFII	-0.518264613821749
+AGID00150	1116	4850	Set163	Cox-IV	-0.044045268013956
+AGID00195	1218	4842	Set163	Cox2	-0.0186146077913686
+AGID00188	803	05-739	Old	CRAF	0.0019557
+AGID00022	179	9427	Old	CRAF_pS338	-0.057699
+AGID00023	181	9197	Set163	Creb	-0.21037573235306
+AGID00393	2334	9198	Set163	CREB_pS133	0.0841475221739891
+AGID00365	2155	4980	Set163	CSK	0.353095350619801
+AGID00367	2160	9201	Set163	CtIP	-0.320019949781496
+AGID00536	2096	ab107198	Old	CTLA4	NA
+AGID00025	198	2936	Set163	Cyclin-D3	-0.130234730062527
+AGID00024	192	1495-1/ab32053	Old	CYCLINB1	-0.63766
+AGID00382	194	sc-718	Old	CYCLIND1	-0.11703
+AGID00437	199	sc-25303	Old	CYCLINE1	-1.12
+AGID00449	202	1142-1	Old	CYCLINE2	-0.073946
+AGID00209	1257	ab110324	Set163	Cyclophilin-F	-0.0339148997449406
+AGID00247	1379	ab48389	Set163	D-a-Tubulin	0.00817038001790513
+AGID00308	1770	GTX10524	Set163	DAPK1_pS308	0.200755334192213
+AGID00304	1744	ab51601	Set163	DAPK2	-0.0517198362440024
+AGID00343	1980	6998	Set163	DDB-1	-0.0160746814035976
+AGID00427	2402	5583	Set163	DDR1	-0.0601203829983705
+AGID00428	2403	SAB4504671	Set163	DDR1_pY513	0.415455364552059
+AGID00532	1273	Bast Lab	Old	DIRAS3	0.047046
+AGID00104	891	ab76008	Old	DJ1	-0.20495
+AGID02146	2452	4658	Set163	DM-Histone-H3	0
+AGID00386	1397	ab32521	Set163	DM-K9-Histone-H3	0.0225003543368025
+AGID00352	2030	14649	Set163	DNA-Ligase-IV	0.0253201344705331
+AGID00407	2371	13609	Set163	DNA_POLG	0.330355304872088
+AGID00399	2344	5032	Set163	DNMT1	0.0804052526087938
+AGID00409	2373	5391	Set163	DRP1	-0.31947618296776
+AGID00253	1406	5149	Old	DUSP4	0.80179
+AGID00334	1936	ab76310	Set163	DUSP6	0.461855053675575
+AGID00116	940	3218	Old	DVL3	0.088945
+AGID00211	1261	sc-251	Old	E2F1	NA
+AGID00148	1099	3195	Old	ECADHERIN	0.19781
+AGID00135	1060	2332	Old	EEF2	-0.62501
+AGID00136	1061	3692	Old	EEF2K	0.12674
+AGID00152	1120	2232	Old	EGFR	-0.63717
+AGID00450	217	2234	Old	EGFR_pY1068	2.7687
+AGID00026	221	1124-1/ab32578	Old	EGFR_pY1173	-0.11247
+AGID00078	722	9742	Old	EIF4E	-0.16175
+AGID00328	1871	ab76256	Set163	eIF4E_pS209	0.107385067330573
+AGID00154	1124	2498	Old	EIF4G	0.16533
+AGID00027	228	9181	Set163	Elk1_pS383	-0.0818396100007752
+AGID00235	1350	M061329-2	Set163	EMA	-1.36907504184009
+AGID00394	2337	3810	Set163	Enolase-1	0.724340152249756
+AGID00395	2338	8171	Set163	Enolase-2	0.409320395544402
+AGID00196	1219	GTX629542	Old	ENY2	0.092086
+AGID00438	1849	A302-024A	Set163	EphA2	0.104325388465637
+AGID00552	2422	6347	Set163	EphA2_pS897	0.253815392208631
+AGID00553	2423	12677	Set163	EphA2_pY588	0.471926892104131
+AGID00075	693	556347	Old	EPPK1	0.53704
+AGID00335	238	RM-9101	Old	ERALPHA	-1.4564
+AGID00029	241	1091-1/ab32396	Old	ERALPHA_pS118	-0.25245
+AGID00240	247	MS-671	Old	ERCC1	0.038792
+AGID00239	1355	11331-1-AP	Old	ERCC5	-0.30167
+AGID00484	249	sc-154	Old	ERK2	0.09989
+AGID00372	2193	3552	Set163	Erk5	-0.0603246051574089
+AGID00405	2369	13826	Set163	ERRalpha	0.473780263569183
+AGID00187	1200	A303-501A	Old	ETS1	-0.5705
+AGID00511	2492	2593	Set163	EVI1	-0.14509021626187
+AGID00485	1284	4905	Old	EZH2	NA
+AGID00030	252	1700-1/ab40794	Set163	FAK	-0.0678846163863935
+AGID02151	2457	8556	Set163	FAK_pY397	0.0884387798189282
+AGID00171	1156	3180	Old	FASN	3.7106
+AGID00356	2085	500-P18/10775-082	Set163	FGF-basic	-0.41692961322391
+AGID00031	262	1574-1/ab45688	Old	FIBRONECTIN	0.72571
+AGID00339	1959	4403	Set163	FN14	0.476000392598527
+AGID02152	2458	20459	Old	FOXM1	0.028942
+AGID00378	269	9467	Old	FOXO3A	-0.15804
+AGID02197	2515	orb6051	Old	FOXO3A_pS318S321	0.10914
+AGID02167	2475	PA5-64616	Set163	FRS2-alpha_pY196	0.365625396714088
+AGID02213	2575	ab124892	Set163	FTO	-0.0573146086231453
+AGID02141	2446	12263	Old	G6PD	0.073164
+AGID00117	943	3239	Old	GAB2	-0.17632
+AGID00412	274	AM4300	Old	GAPDH	-0.6768
+AGID00086	764	558686	Old	GATA3	1.0188
+AGID00383	1578	4253	Old	GATA6	0.25402
+AGID00289	1634	12601-1-AP	Set163	GCLC	-0.383609632354771
+AGID00305	1745	ab124827	Set163	GCLM	-0.00778461264339913
+AGID00212	1263	3305	Old	GCN5L2	-0.16706
+AGID00270	1579	3538	Set163	Gli1	0.152594988797011
+AGID00263	1520	ab69838	Set163	Gli3	0.173564242485711
+AGID00548	2530	3660	Set163	Glucocorticoid-Receptor	-0.47097961571924
+AGID00387	1617	12793	Set163	Glutamate-D1-2	-0.293245744899017
+AGID00262	1491	ab156876	Set163	Glutaminase	-0.224524671838167
+AGID00319	1807	4275	Set163	Granzyme-B	-0.515379708046442
+AGID00368	2169	ab183737	Set163	GRB7	2.91968461179436
+AGID00396	2339	3593	Set163	Grp75	0.334670323457097
+AGID00174	1163	9315	Set163	GSK-3B	0.470214513921312
+AGID00502	1082	9336	Old	GSK3_pS9	0.29715
+AGID00033	284	sc-7291	Old	GSK3ALPHABETA	0.17894
+AGID00034	285	9331	Old	GSK3ALPHABETA_pS21S9	0.46264
+AGID00129	1035	3886	Old	GYS	NA
+AGID00130	1036	3891	Old	GYS_pS641	NA
+AGID01354	1342	9718	Set163	H2AX_pS139	-0.112904651944843
+AGID00363	1409	MA1-2022	Set163	H2AX_pS140	0.137730326610916
+AGID00131	1038	MS-325-P1	Old	HER2	4.0476
+AGID00142	299	06-229	Old	HER2_pY1248	3.4563
+AGID00110	911	sc-285	Old	HER3	0.19649
+AGID00080	728	4791	Old	HER3_pY1289	0.23618
+AGID00103	890	2573	Old	HEREGULIN	-0.10629
+AGID00271	1582	11988	Set163	HES1	0.232255155152309
+AGID00397	2340	2024	Set163	Hexokinase-I	0.202645143438123
+AGID00442	1023	2867	Set163	Hexokinase-II	0.950413831796265
+AGID00419	1402	610958	Old	HIF1ALPHA	NA
+AGID00205	1250	ab1791	Set163	Histone-H3	-0.137994785375669
+AGID00398	2341	3377	Set163	Histone-H3_pS10	0.150260259237014
+AGID00332	1901	ab128959	Set163	HLA-DQA1	1.13036401742095
+AGID00333	1902	14832-1-AP	Set163	HMHA1	0.448434893558608
+AGID00035	321	2402	Set163	HSP27	-0.0578196672893889
+AGID00036	323	2401	Set163	HSP27_pS82	0.242605380771703
+AGID00320	1808	12165	Set163	HSP60	-0.0500198305948532
+AGID00037	325	4872	Old	HSP70	0.054946
+AGID00366	2158	86630	Set163	IDO	-0.101440102273845
+AGID00197	1221	3024	Old	IGF1R_pY1135Y1136	0.052024
+AGID00038	335	3922	Old	IGFBP2	1.0977
+AGID00090	793	611504	Set163	IGFBP3	0.0116450673305732
+AGID00039	336	3027	Set163	IGFRb	-0.784764605711927
+AGID00336	1949	12153	Set163	IL-6	-0.225429936057184
+AGID02221	2583	57145	Set163	IMP3	-0.0272847518966625
+AGID02153	2459	14543	Old	INPP4B	0.13123
+AGID00272	1586	3025	Set163	IR-b	-0.457644646884869
+AGID00519	2519	4302	Set163	IRF-3	-0.0621893606270416
+AGID00520	2520	4947	Set163	IRF-3_pS396	-0.0250751490699335
+AGID00223	1316	sc-497	Old	IRF1	-0.20397
+AGID00092	802	06-248	Old	IRS1	-0.018784
+AGID00040	371	4502	Set163	IRS2	-0.132365073586223
+AGID00250	1394	sc-13157	Old	JAB1	-0.056967
+AGID00256	1413	ab109536	Set163	Jagged1	-0.145229082329043
+AGID00177	1166	3230	Old	JAK2	-0.2355
+AGID00758	377	4671	Old	JNK_pT183Y185	0.38924
+AGID02136	2439	PA5-28262	Old	JNK2	0.048414
+AGID00307	1757	ab10484	Set163	KAP1	-0.00986011904800313
+AGID00528	904	2180	Old	KU80	0.21786
+AGID00375	2237	HPA028732	Set163	LAD1	0.53467039623755
+AGID00290	1643	IHC-00439	Set163	Lasu1	0.386930367645228
+AGID00279	1618	4108	Set163	LC3A-B	0.0889001222711438
+AGID00042	397	2752	Old	LCK	-0.027142
+AGID00119	976	3582	Old	LDHA	NA
+AGID00533	977	ab85319	Old	LDHB	NA
+AGID00529	1477	3050	Old	LKB1	0.012151
+AGID00244	1367	2568	Set163	LRP6_pS1490	-0.0771396303793022
+AGID00439	2424	2796	Set163	Lyn	0.123880332710611
+AGID02154	2460	4370	Old	MAPK_pT202Y204	1.1023
+AGID00198	1222	5453	Set163	Mcl-1	-0.454135658532922
+AGID00288	1633	AB3314P	Set163	MCT4	1.15631525704494
+AGID00175	1164	3521	Set163	MDM2_pS166	0.180210393326331
+AGID00044	417	1235-1/ab32576	Old	MEK1	0.18609
+AGID00143	1076	9154	Old	MEK1_pS217S221	0.5548
+AGID00201	1243	9125	Set163	MEK2	-0.181195081696043
+AGID00361	2118	ab51061	Set163	MelanA	0.175900369620698
+AGID00362	2119	ab137078	Set163	Melanoma-gp100	0.12674529003874
+AGID00337	1951	12711	Set163	MERIT40	-0.32037024423035
+AGID00338	1952	12110	Set163	MERIT40_pS29	-0.107184604672206
+AGID02212	2574	ab195352	Set163	METTL3	-0.160164612643399
+AGID00225	1323	sc-20121	Set163	MIF	0.229845392971093
+AGID00137	1062	WH0054206M1	Old	MIG6	-0.017007
+AGID00403	2117	ab20663	Set163	MITF	-0.047319996934661
+AGID00503	1067	ab3298	Old	MITOCHONDRIA	NA
+AGID00321	1809	14739	Set163	Mitofusin-1	-0.0300834002995141
+AGID00322	1810	11925	Set163	Mitofusin-2	0.361925265709275
+AGID00389	2324	3515	Set163	MLH1	0.309585248103338
+AGID00312	1780	14993	Set163	MLKL	-0.111274761115519
+AGID00402	2359	MAB3328	Set163	MMP14	0.647675331211681
+AGID00045	435	4022	Set163	MMP2	-0.123297467853369
+AGID00122	1005	2195	Set163	Mnk1	0.648884178369632
+AGID00331	1899	sc-377312	Set163	MR1	-0.259609792991623
+AGID00273	1589	ab103319	Set163	MRAP	0.0366153965754585
+AGID00530	440	4847	Old	MRE11	0.19775
+AGID00390	905	2850	Old	MSH2	-0.14229
+AGID00138	1063	22030002	Old	MSH6	0.023925
+AGID00299	1675	ab76148	Set163	MSI2	-0.334349603346563
+AGID00232	1344	ab14705	Set163	MTCO1	0.315973711743262
+AGID00046	444	2983	Old	MTOR	0.13233
+AGID00047	446	2971	Old	MTOR_pS2448	0.28168
+AGID00204	1247	H00009788-M01A	Set163	MTSS1	-0.0493697828716746
+AGID00401	1139	21370002	Old	MYH11	-1.2669
+AGID00291	1647	3403	Old	MYOSINIIA	0.25466
+AGID00173	1160	5026	Old	MYOSINIIA_pS1943	0.63364
+AGID00318	1803	4282	Set163	Myt1	0.165325137477058
+AGID00216	1274	5795-1/ab129189	Old	NAPSINA	NA
+AGID00418	452	4061	Old	NCADHERIN	-0.25248
+AGID00156	1126	3217	Old	NDRG1_pT346	0.57989
+AGID02133	2436	PA5-45913	Set163	NDUFB4	0.627725394288073
+AGID00134	1046	22710002	Old	NF2	0.1515
+AGID00048	457	3033	Old	NFKBP65_pS536	1.385
+AGID02155	2461	3608	Old	NOTCH1	-0.16934
+AGID00340	1969	4147	Set163	Notch1-cleaved	-0.145449853607338
+AGID00087	767	sc-5593	Set163	Notch3	0.0660053686416274
+AGID00258	1420	3187	Set163	NQO1	0.210400207008377
+AGID00162	1136	sc-31	Old	NRAS	-0.025873
+AGID00257	1419	12721	Old	NRF2	NA
+AGID00297	1669	2750	Set163	Oct-4	-0.188179617070876
+AGID00420	466	1712-1/ab40803	Old	P16INK4A	0.02479
+AGID00384	470	sc-6246	Old	P21	0.20372
+AGID00105	897	1591-1/ab32034	Old	P27	-0.29688
+AGID00096	842	AF1555	Old	P27_pT157	0.14988
+AGID00099	878	ab64949	Old	P27_pT198	0.096004
+AGID00181	1175	9228	Set163	p38-a	-0.0291757198764171
+AGID00098	479	9211	Old	P38_pT180Y182	0.39221
+AGID00049	478	9212	Old	P38MAPK	0.0145
+AGID00151	1119	4695	Set163	p44-42-MAPK	0.176510381508172
+AGID00050	481	9282	Old	P53	0.2277
+AGID00490	1187	610833	Old	P62LCKLIGAND	-0.14564
+AGID00545	1415	ab53039	Old	P63	NA
+AGID00052	494	9205	Old	P70S6K_pT389	-0.031048
+AGID00051	493	1494-1/ab32529	Old	P70S6K1	0.18759
+AGID00085	759	9347	Old	P90RSK	-0.052201
+AGID00531	770	9344	Old	P90RSK_pT359S363	0.026119
+AGID00182	1178	9346	Set163	p90RSK_pT573	0.0679752699374722
+AGID00053	499	612024	Old	PAI1	0.41994
+AGID00224	1322	HPA035895	Set163	PAICS	-0.58140460515741
+AGID00323	1811	2602	Set163	PAK1	0.139804965923158
+AGID02199	2517	PA5-69540	Set163	PAK4	0.257280280204714
+AGID00245	1370	4336-BPC-100	Set163	PAR	1.00394493445428
+AGID00374	2209	66564	Set163	PARG	0.190115119177975
+AGID00370	1372	sc-7150	Old	PARP1	-0.55815
+AGID00468	501	9546	Old	PARPCLEAVED	-0.29539
+AGID00274	1591	ab53715	Set163	Patched	0.0355553578978461
+AGID00513	2486	60433	Set163	PAX6	-0.0986247099612602
+AGID00441	1621	9857	Set163	PAX8	0.56835901049815
+AGID00054	504	2542	Old	PAXILLIN	0.090588
+AGID00055	509	2130	Old	PCADHERIN	-0.046127
+AGID00248	511	ab29	Old	PCNA	-0.49177
+AGID00413	2095	43248	Old	PDCD1	NA
+AGID00094	816	600-401-965	Old	PDCD4	0.21229
+AGID00385	1225	3169	Set163	PDGFRB	0.521440382929124
+AGID00210	1258	ab110332	Set163	PDH	-0.0406007638479183
+AGID00324	1817	3205	Set163	PDHA1	0.298359717507937
+AGID00280	1622	3820	Set163	PDHK1	0.00701538617825087
+AGID00056	515	3062	Old	PDK1	0.061712
+AGID00057	516	3061	Old	PDK1_pS241	0.24061
+AGID00300	1234	sc-19090	Old	PDL1	0.095815
+AGID00124	1017	2780	Old	PEA15	0.35571
+AGID00125	1018	44-836G	Old	PEA15_pS116	-0.23128
+AGID00440	2429	3192	Set163	PERK	0.909884779120038
+AGID02207	2569	ab192876	Set163	PGM1	-0.0564952584485278
+AGID00281	1623	13428	Set163	PHGDH	0.166454769831869
+AGID00425	2399	22789-1-AP	Set163	PHLPP	-0.0979046063357597
+AGID00226	1330	sc-376412	Set163	PI3K-p110-b	-0.196354617772688
+AGID00093	808	4255	Old	PI3KP110ALPHA	-0.056206
+AGID00058	523	06-195	Old	PI3KP85	-0.20909
+AGID00296	1667	5675	Set163	PKA-a	-0.30728974963527
+AGID00259	1426	9375	Set163	PKC-a-b-II_pT638_T641	0.0375853895053571
+AGID00172	529	05-154	Old	PKCALPHA	-0.24012
+AGID00460	530	06-822	Old	PKCALPHA_pS657	-0.081272
+AGID00114	932	07-875	Old	PKCDELTA_pS664	-0.070524
+AGID00163	1137	9371	Old	PKCPANBETAII_pS660	0.1168
+AGID00126	1025	4053	Old	PKM2	NA
+AGID00512	2489	5690	Set163	PLC-gamma1	0.583364559268721
+AGID02138	2441	GTX133463	Set163	PLC-gamma2_pY759	-0.189219773028986
+AGID00084	754	4513	Set163	PLK1	0.126895325042671
+AGID00203	1246	22510002	Set163	PMS2	0.588455389505357
+AGID00207	1254	ab14734	Set163	Porin	-0.129574604256318
+AGID00381	549	1483-1/ab32085	Old	PR	-0.22381
+AGID00081	738	AHO1031	Set163	PRAS40	-0.0147846034245416
+AGID00082	739	44-1100G	Old	PRAS40_pT246	0.023258
+AGID00424	2398	OAAF05458	Set163	PRC1_pT481	0.230565370582439
+AGID00492	1205	HPA007730	Old	PRDX1	-0.10731
+AGID00190	1204	ab102739	Old	PREX1	0.50502
+AGID00061	566	9552	Old	PTEN	0.4041
+AGID00364	2154	ab76942	Set163	PTPN12	0.48610523417108
+AGID00218	1290	4976	Set163	Puma	-0.352759603207933
+AGID00200	1242	SAB2900066	Old	PYGB	NA
+AGID00535	1494	ab61013	Old	PYGL	NA
+AGID00202	1245	H00005837-M10	Old	PYGM	NA
+AGID00275	1607	3291	Set163	Pyk2_pY402	-0.0799301889172214
+AGID00145	1083	3539	Old	RAB11	0.0089319
+AGID00169	1150	4314	Old	RAB25	-0.31522
+AGID00342	1979	24555	Set163	Rad23A	-0.472389689851329
+AGID00261	987	05-525	Old	RAD50	-0.4966
+AGID00360	579	NA71	Old	RAD51	-0.2046
+AGID00158	1128	2280	Old	RAPTOR	-0.12726
+AGID00059	552	9309	Old	RB	-0.17993
+AGID00060	557	9308	Old	RB_pS807S811	0.064119
+AGID00164	1138	21390002	Old	RBM15	-0.19297
+AGID00547	735	3221	Old	RET_pY905	NA
+AGID00097	847	MAB3426	Set163	Rheb	0.0948253012677233
+AGID00159	1129	2114	Old	RICTOR	0.34975
+AGID00160	1130	3806	Old	RICTOR_pT1135	0.4888
+AGID00282	1624	4926	Set163	RIP	0.11828035187613
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data/gdc_data_organized/02bed00f-bef7-4fb7-b243-540354990e45/nationwidechildrens.org_clinical.TCGA-A2-A0T1.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<brca:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/brca/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/brca/2.7/TCGA_BCR.BRCA_Clinical.xsd" schemaVersion="2.7" xmlns:brca="http://tcga.nci/bcr/xml/clinical/brca/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:brca_shared="http://tcga.nci/bcr/xml/clinical/brca/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:brca_nte="http://tcga.nci/bcr/xml/clinical/brca/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:follow_up_v2.1="http://tcga.nci/bcr/xml/clinical/brca/followup/2.7/2.1" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">6FA5A493-33C0-43A1-A0C3-67083C369647</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">72.91.0</admin:batch_number>
+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+        <admin:patient_withdrawal>
+            <admin:withdrawn>false</admin:withdrawn>
+        </admin:patient_withdrawal>
+        <admin:program xsi:nil="true" xsd_ver="2.7"/>
+        <admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
+    </admin:admin>
+    <brca:patient>
+        <admin:additional_studies/>
+        <clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305085">Breast</clin_shared:tumor_tissue_site>
+        <clin_shared:tumor_tissue_site_other preferred_name="site_of_primary_tumor_other" display_order="999" cde="2584114" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305086" xsi:nil="true"/>
+        <shared:other_dx preferred_name="history_other_malignancy" display_order="14" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305074">No</shared:other_dx>
+        <shared:gender preferred_name="gender" display_order="10" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305065">FEMALE</shared:gender>
+        <clin_shared:vital_status preferred_name="vital_status" display_order="17" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305070">Alive</clin_shared:vital_status>
+        <clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="9" cde_ver="1.000">-20227</clin_shared:days_to_birth>
+        <clin_shared:days_to_last_known_alive precision="day" xsd_ver="2.1" tier="2" cde="" owner="TSS" procurement_status="Not Available" preferred_name="" display_order="9999" cde_ver=""/>
+        <clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="25" cde_ver="1.000"/>
+        <clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="21" cde_ver="1.000">323</clin_shared:days_to_last_followup>
+        <clin_shared:race_list>
+            <clin_shared:race preferred_name="race" display_order="12" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305072">AMERICAN INDIAN OR ALASKA NATIVE</clin_shared:race>
+        </clin_shared:race_list>
+        <shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1</shared:bcr_patient_barcode>
+        <shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A2</shared:tissue_source_site>
+        <shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A0T1</shared:patient_id>
+        <shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">02bed00f-bef7-4fb7-b243-540354990e45</shared:bcr_patient_uuid>
+        <shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="15" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305075">No</shared:history_of_neoadjuvant_treatment>
+        <clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="72" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
+        <clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C50.9</clin_shared:icd_o_3_site>
+        <clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8500/3</clin_shared:icd_o_3_histology>
+        <clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C50.9</clin_shared:icd_10>
+        <clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
+        <clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">55</clin_shared:age_at_initial_pathologic_diagnosis>
+        <clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="34" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305092">2009</clin_shared:year_of_initial_pathologic_diagnosis>
+        <clin_shared:ethnicity preferred_name="ethnicity" display_order="13" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305073">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
+        <clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="16" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305071">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
+        <clin_shared:primary_lymph_node_presentation_assessment preferred_name="lymph_nodes_examined" display_order="47" cde="2200396" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <clin_shared:lymph_node_examined_count preferred_name="lymph_nodes_examined_count" display_order="48" cde="3" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305104">10</clin_shared:lymph_node_examined_count>
+        <brca_shared:er_detection_method_text preferred_name="er_positivity_method" display_order="63" cde="69" cde_ver="2.310" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305117"/>
+        <brca_shared:pgr_detection_method_text preferred_name="pr_positivity_define_method" display_order="69" cde="785" cde_ver="2.310" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305122"/>
+        <brca:anatomic_neoplasm_subdivisions>
+            <clin_shared:anatomic_neoplasm_subdivision preferred_name="anatomic_organ_subdivision" display_order="9999" cde="3108203" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305087">Right Upper Outer Quadrant</clin_shared:anatomic_neoplasm_subdivision>
+        </brca:anatomic_neoplasm_subdivisions>
+        <brca_shared:her2_neu_chromosone_17_signal_ratio_value preferred_name="her2_cent17_ratio" display_order="79" cde="2497552" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305132"/>
+        <brca:axillary_lymph_node_stage_method_type preferred_name="axillary_staging_method" display_order="44" cde="2516112" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305101">Axillary lymph node dissection alone</brca:axillary_lymph_node_stage_method_type>
+        <brca:axillary_lymph_node_stage_other_method_descriptive_text preferred_name="axillary_staging_method_other" display_order="45" cde="3124496" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305102"/>
+        <brca:breast_carcinoma_surgical_procedure_name preferred_name="surgical_procedure_first" display_order="38" cde="2739580" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305095">Lumpectomy</brca:breast_carcinoma_surgical_procedure_name>
+        <brca:breast_neoplasm_other_surgical_procedure_descriptive_text preferred_name="surgery_for_positive_margins_other" display_order="42" cde="3124493" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305099" xsi:nil="true"/>
+        <brca:breast_carcinoma_primary_surgical_procedure_name preferred_name="surgery_for_positive_margins" display_order="41" cde="1218" cde_ver="3.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305098"/>
+        <brca:surgical_procedure_purpose_other_text preferred_name="first_surgical_procedure_other" display_order="39" cde="3020338" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305096"/>
+        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305088">Infiltrating Ductal Carcinoma</shared:histological_type>
+        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305089" xsi:nil="true"/>
+        <clin_shared:menopause_status preferred_name="menopause_status" display_order="11" cde="2957270" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305069">Post (prior bilateral ovariectomy OR >12 mo since LMP with no prior hysterectomy)</clin_shared:menopause_status>
+        <brca_shared:breast_carcinoma_progesterone_receptor_status preferred_name="pr_status_by_ihc" display_order="64" cde="2957357" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305118">Negative</brca_shared:breast_carcinoma_progesterone_receptor_status>
+        <brca:cytokeratin_immunohistochemistry_staining_method_micrometastasis_indicator preferred_name="micromet_detection_by_ihc" display_order="46" cde="3086152" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305103">NO</brca:cytokeratin_immunohistochemistry_staining_method_micrometastasis_indicator>
+        <brca:breast_carcinoma_immunohistochemistry_er_pos_finding_scale preferred_name="er_positivity_scale_used" display_order="60" cde="3203081" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <brca_shared:immunohistochemistry_positive_cell_score preferred_name="er_ihc_score" display_order="61" cde="2230166" cde_ver="3.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305115"/>
+        <brca_shared:her2_immunohistochemistry_level_result preferred_name="her2_ihc_score" display_order="72" cde="2178402" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305125">3+</brca_shared:her2_immunohistochemistry_level_result>
+        <brca:breast_cancer_surgery_margin_status preferred_name="margin_status_reexcision" display_order="43" cde="2241252" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305100"/>
+        <clin_shared:margin_status preferred_name="margin_status" display_order="40" cde="3114007" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305097">Negative</clin_shared:margin_status>
+        <clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="36" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305093">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
+        <clin_shared:init_pathology_dx_method_other preferred_name="method_initial_path_dx_other" display_order="37" cde="2757948" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305094" xsi:nil="true"/>
+        <brca_shared:lab_procedure_her2_neu_in_situ_hybrid_outcome_type preferred_name="her2_fish_status" display_order="75" cde="2854089" cde_ver="1.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Not Evaluated" restricted="false" source_system_identifier="305128"/>
+        <brca_shared:breast_carcinoma_estrogen_receptor_status preferred_name="er_status_by_ihc" display_order="58" cde="2957359" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305113">Negative</brca_shared:breast_carcinoma_estrogen_receptor_status>
+        <brca_shared:lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="her2_status_by_ihc" display_order="70" cde="2957563" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305123">Positive</brca_shared:lab_proc_her2_neu_immunohistochemistry_receptor_status>
+        <clin_shared:number_of_lymphnodes_positive_by_ihc preferred_name="lymph_nodes_examined_ihc_count" display_order="50" cde="3086383" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305106"/>
+        <clin_shared:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="49" cde="3086388" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305105">10</clin_shared:number_of_lymphnodes_positive_by_he>
+        <brca_shared:pos_finding_progesterone_receptor_other_measurement_scale_text preferred_name="pr_positivity_scale_other" display_order="68" cde="3086857" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305121"/>
+        <brca_shared:positive_finding_estrogen_receptor_other_measurement_scale_text preferred_name="er_positivity_scale_other" display_order="62" cde="3086851" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305116"/>
+        <brca_shared:her2_erbb_pos_finding_cell_percent_category preferred_name="her2_ihc_percent_positive" display_order="71" cde="3086980" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305124"/>
+        <brca_shared:pos_finding_her2_erbb2_other_measurement_scale_text preferred_name="her2_positivity_scale_other" display_order="73" cde="3087479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305126"/>
+        <brca_shared:her2_erbb_method_calculation_method_text preferred_name="her2_positivity_method_text" display_order="74" cde="3087487" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305127"/>
+        <brca_shared:her2_neu_and_centromere_17_copy_number_analysis_input_total_number_count preferred_name="her2_and_cent17_cells_count" display_order="78" cde="3087902" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305131"/>
+        <brca_shared:her2_and_centromere_17_positive_finding_other_measurement_scale_text preferred_name="her2_and_cent17_scale_other" display_order="80" cde="3087923" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305133"/>
+        <brca_shared:her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="her2_fish_method" display_order="81" cde="3087929" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305134"/>
+        <clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="4" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305063">NO</clin_shared:tissue_prospective_collection_indicator>
+        <clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="5" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305064">YES</clin_shared:tissue_retrospective_collection_indicator>
+        <brca_shared:fluorescence_in_situ_hybridization_diagnostic_procedure_chromosome_17_signal_result_range preferred_name="cent17_copy_number" display_order="77" cde="3104295" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305130"/>
+        <brca:first_nonlymph_node_metastasis_anatomic_sites>
+            <clin_shared:metastatic_site_at_diagnosis preferred_name="metastasis_site" display_order="56" cde="3124499" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305111"/>
+            <clin_shared:metastatic_site_at_diagnosis_other preferred_name="metastasis_site_other" display_order="57" cde="3124503" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305112"/>
+        </brca:first_nonlymph_node_metastasis_anatomic_sites>
+        <brca_shared:er_level_cell_percentage_category preferred_name="er_status_ihc_Percent_Positive" display_order="59" cde="3128341" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305114">&lt;10%</brca_shared:er_level_cell_percentage_category>
+        <brca_shared:progesterone_receptor_level_cell_percent_category preferred_name="pr_status_ihc_percent_positive" display_order="65" cde="3128342" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305119">&lt;10%</brca_shared:progesterone_receptor_level_cell_percent_category>
+        <brca:distant_metastasis_present_ind2 preferred_name="metastatic_tumor_indicator" display_order="999" cde="2194698" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status preferred_name="nte_er_status" display_order="97" cde="3131865" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305135"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_level_cell_percent_category preferred_name="nte_er_status_ihc__positive" display_order="98" cde="3131869" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305136"/>
+        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_pos_cell_score preferred_name="nte_er_ihc_intensity_score" display_order="100" cde="3131873" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305137"/>
+        <brca_shared:pos_finding_metastatic_breast_carcinoma_estrogen_receptor_other_measuremenet_scale_text preferred_name="nte_er_positivity_other_scale" display_order="101" cde="3131877" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305138"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_detection_method_text preferred_name="nte_er_positivity_define_method" display_order="102" cde="3131881" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305139"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status preferred_name="nte_pr_status_by_ihc" display_order="103" cde="3131884" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305140"/>
+        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="nte_her2_status" display_order="109" cde="3131997" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305145"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_level_cell_percent_category preferred_name="nte_pr_status_ihc__positive" display_order="104" cde="3131891" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305141"/>
+        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_pr_pos_cell_score preferred_name="nte_pr_ihc_intensity_score" display_order="106" cde="3131988" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305142"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_progesterone_receptor_other_measure_scale_text preferred_name="nte_pr_positivity_other_scale" display_order="107" cde="3131992" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305143"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_detection_method_text preferred_name="nte_pr_positivity_define_method" display_order="108" cde="3131993" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305144"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_cell_percent_category preferred_name="nte_her2_status_ihc__positive" display_order="110" cde="3132322" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305146"/>
+        <brca_shared:metastatic_breast_carcinoma_erbb2_immunohistochemistry_level_result preferred_name="nte_her2_positivity_ihc_score" display_order="111" cde="3132444" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305147"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_her2_erbb2_other_measure_scale_text preferred_name="nte_her2_positivity_other_scale" display_order="112" cde="3132448" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305148"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_method_calculation_method_text preferred_name="nte_her2_positivity_method" display_order="113" cde="3132452" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305149"/>
+        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_in_situ_hybridization_outcome_type preferred_name="nte_her2_fish_status" display_order="114" cde="3132455" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305150"/>
+        <brca_shared:metastatic_breast_carcinoma_fluorescence_in_situ_hybridization_diagnostic_proc_centromere_17_signal_result_range preferred_name="nte_cent_17_signal_number" display_order="116" cde="3132887" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305152"/>
+        <brca_shared:her2_neu_and_centromere_17_copy_number_metastatic_breast_carcinoma_analysis_input_total_number_count preferred_name="her2_cent17_counted_cells_count" display_order="117" cde="3132899" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305153"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_neu_chromosone_17_signal_ratio_value preferred_name="nte_cent_17_her2_ratio" display_order="118" cde="3132903" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305154"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_other_scale_measurement_text preferred_name="nte_cent17_her2_other_scale" display_order="119" cde="3132907" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305155"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="nte_her2_fish_define_method" display_order="120" cde="3132910" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305156"/>
+        <brca_shared:her2_neu_metastatic_breast_carcinoma_copy_analysis_input_total_number preferred_name="nte_her2_signal_number" display_order="115" cde="3133734" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305151"/>
+        <brca_shared:her2_neu_breast_carcinoma_copy_analysis_input_total_number preferred_name="her2_copy_number" display_order="76" cde="3133738" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305129"/>
+        <brca:breast_carcinoma_immunohistochemistry_progesterone_receptor_pos_finding_scale preferred_name="pr_positivity_scale_used" display_order="66" cde="3203083" cde_ver="1.000" xsd_ver="2.4.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <brca_shared:breast_carcinoma_immunohistochemistry_pos_cell_score preferred_name="pr_positivity_ihc_intensity_score" display_order="67" cde="3133874" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305120"/>
+        <shared_stage:stage_event system="AJCC">
+            <shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="51" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1079901"/>
+            <shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="55" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305110">Stage IIIC</shared_stage:pathologic_stage>
+            <shared_stage:tnm_categories>
+                <shared_stage:clinical_categories>
+                    <shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                    <shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                </shared_stage:clinical_categories>
+                <shared_stage:pathologic_categories>
+                    <shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="52" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305107">T3</shared_stage:pathologic_T>
+                    <shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="53" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305108">N3</shared_stage:pathologic_N>
+                    <shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="54" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305109">M0</shared_stage:pathologic_M>
+                </shared_stage:pathologic_categories>
+            </shared_stage:tnm_categories>
+            <shared_stage:psa>
+                <shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="9999" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Not Applicable" preferred_name="days_to_psa_most_recent" display_order="9999" cde_ver="1.000"/>
+            </shared_stage:psa>
+            <shared_stage:gleason_grading>
+                <shared_stage:gleason_score preferred_name="gleason_score" display_order="9999" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="9999" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9999" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="9999" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            </shared_stage:gleason_grading>
+            <shared_stage:ann_arbor>
+                <shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            </shared_stage:ann_arbor>
+            <shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+        </shared_stage:stage_event>
+        <clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="27" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="26" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <brca_nte:new_tumor_events>
+            <nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="82" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        </brca_nte:new_tumor_events>
+        <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305061">12</clin_shared:day_of_form_completion>
+        <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305060">11</clin_shared:month_of_form_completion>
+        <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305062">2010</clin_shared:year_of_form_completion>
+        <brca:follow_ups>
+            <follow_up_v2.1:follow_up version="2.1" sequence="1">
+                <clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1-F13946</clin_shared:bcr_followup_barcode>
+                <clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">C7405E45-2C5E-4447-884E-3AF0DDDF3479</clin_shared:bcr_followup_uuid>
+                <clin_shared:followup_case_report_form_submission_reason preferred_name="followup_reason" display_order="999" cde="3233305" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086763">Scheduled Follow-up Submission</clin_shared:followup_case_report_form_submission_reason>
+                <clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="26" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086764">YES</clin_shared:radiation_therapy>
+                <clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="27" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086765">YES</clin_shared:postoperative_rx_tx>
+                <clin_shared:vital_status preferred_name="vital_status" display_order="17" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086766">Alive</clin_shared:vital_status>
+                <clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="21" cde_ver="1.000">521</clin_shared:days_to_last_followup>
+                <clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="25" cde_ver="1.000"/>
+                <clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="16" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086773">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
+                <nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="82" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086774">NO</nte:new_tumor_event_after_initial_treatment>
+                <nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Applicable" preferred_name="new_tumor_event_dx_days_to" display_order="89" cde_ver="1.000"/>
+                <nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="83" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086778"/>
+                <nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="84" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086779"/>
+                <nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="85" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086780"/>
+                <nte:additional_surgery_locoregional_procedure preferred_name="new_tumor_event_surgery" display_order="999" cde="3008755" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086781"/>
+                <nte:days_to_additional_surgery_metastatic_procedure precision="day" xsd_ver="2.2" tier="2" cde="3408682" owner="TSS" procurement_status="Not Available" preferred_name="new_tumor_event_surgery_days_to_met" display_order="9999" cde_ver="1.000"/>
+                <nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="95" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086785"/>
+                <nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="96" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086786"/>
+                <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status preferred_name="nte_er_status" display_order="97" cde="3131865" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086787"/>
+                <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_level_cell_percent_category preferred_name="nte_er_status_ihc__positive" display_order="98" cde="3131869" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086788"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_positive_finding_scale_type preferred_name="nte_er_positivity_scale_used" display_order="99" cde="3203082" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086789"/>
+                <brca_shared:pos_finding_metastatic_breast_carcinoma_estrogen_receptor_other_measuremenet_scale_text preferred_name="nte_er_positivity_other_scale" display_order="101" cde="3131877" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086790"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_pos_cell_score preferred_name="nte_er_ihc_intensity_score" display_order="100" cde="3131873" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086791"/>
+                <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_detection_method_text preferred_name="nte_er_positivity_define_method" display_order="102" cde="3131881" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086792"/>
+                <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status preferred_name="nte_pr_status_by_ihc" display_order="103" cde="3131884" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086793"/>
+                <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_level_cell_percent_category preferred_name="nte_pr_status_ihc__positive" display_order="104" cde="3131891" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086794"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_progesterone_receptor_positive_finding_scale_type preferred_name="nte_pr_positivity_scale_used" display_order="105" cde="3203085" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086795"/>
+                <brca_shared:metastatic_breast_carcinoma_pos_finding_progesterone_receptor_other_measure_scale_text preferred_name="nte_pr_positivity_other_scale" display_order="107" cde="3131992" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086796"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_pr_pos_cell_score preferred_name="nte_pr_ihc_intensity_score" display_order="106" cde="3131988" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086797"/>
+                <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_detection_method_text preferred_name="nte_pr_positivity_define_method" display_order="108" cde="3131993" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086798"/>
+                <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="nte_her2_status" display_order="109" cde="3131997" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086799"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_cell_percent_category preferred_name="nte_her2_status_ihc__positive" display_order="110" cde="3132322" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086800"/>
+                <brca_shared:metastatic_breast_carcinoma_erbb2_immunohistochemistry_level_result preferred_name="nte_her2_positivity_ihc_score" display_order="111" cde="3132444" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086801"/>
+                <brca_shared:metastatic_breast_carcinoma_pos_finding_her2_erbb2_other_measure_scale_text preferred_name="nte_her2_positivity_other_scale" display_order="112" cde="3132448" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086802"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_erbb_method_calculation_method_text preferred_name="nte_her2_positivity_method" display_order="113" cde="3132452" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086803"/>
+                <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_in_situ_hybridization_outcome_type preferred_name="nte_her2_fish_status" display_order="114" cde="3132455" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086804"/>
+                <brca_shared:her2_neu_metastatic_breast_carcinoma_copy_analysis_input_total_number preferred_name="nte_her2_signal_number" display_order="115" cde="3133734" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086805"/>
+                <brca_shared:metastatic_breast_carcinoma_fluorescence_in_situ_hybridization_diagnostic_proc_centromere_17_signal_result_range preferred_name="nte_cent_17_signal_number" display_order="116" cde="3132887" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086806"/>
+                <brca_shared:her2_neu_and_centromere_17_copy_number_metastatic_breast_carcinoma_analysis_input_total_number_count preferred_name="her2_cent17_counted_cells_count" display_order="117" cde="3132899" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086807"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_neu_chromosone_17_signal_ratio_value preferred_name="nte_cent_17_her2_ratio" display_order="118" cde="3132903" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086808"/>
+                <brca_shared:metastatic_breast_carcinoma_pos_finding_other_scale_measurement_text preferred_name="nte_cent17_her2_other_scale" display_order="119" cde="3132907" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086809"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="nte_her2_fish_define_method" display_order="120" cde="3132910" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1086810"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086761">18</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086760">7</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1086762">2011</clin_shared:year_of_form_completion>
+            </follow_up_v2.1:follow_up>
+        </brca:follow_ups>
+        <rx:drugs>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305210">3</rx:regimen_number>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1-D3712</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">3674b5d0-54ba-4c56-b4d1-096bcdddbe9d</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305219"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305220"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305217"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305218"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305216"/>
+                <rx:days_to_drug_therapy_start precision="year" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">46</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000"/>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305213">Targeted Molecular therapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305214"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305215">Herceptin</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305211">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305212"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305221">IV</rx:route_of_administration>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305225">YES</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305208">12</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305207">11</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305209">2010</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305186">2</rx:regimen_number>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1-D3711</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">f7aadf3f-5dcd-4cf4-b04d-5b9f6907fc68</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305195"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305196"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305193"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305194"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305192">6</rx:number_cycles>
+                <rx:days_to_drug_therapy_start precision="year" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">46</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">187</rx:days_to_drug_therapy_end>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305189">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305190"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305191">Carboplatin</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305187">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305188"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305197">IV</rx:route_of_administration>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305201">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305184">12</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305183">11</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305185">2010</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305162">1</rx:regimen_number>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1-D3710</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">8ecf4ba5-9b63-4f13-90be-e4249f4d024b</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305171"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305172"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305169"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305170"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305168">6</rx:number_cycles>
+                <rx:days_to_drug_therapy_start precision="year" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">46</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">187</rx:days_to_drug_therapy_end>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305165">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305166"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305167">Taxotere</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305163">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305164"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305173">IV</rx:route_of_administration>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305177">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305160">12</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305159">11</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305161">2010</clin_shared:year_of_form_completion>
+            </rx:drug>
+        </rx:drugs>
+        <rad:radiations>
+            <rad:radiation>
+                <rad:bcr_radiation_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1-R3713</rad:bcr_radiation_barcode>
+                <rad:bcr_radiation_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">06674eb1-647c-45ef-8d3f-63cb7fd97891</rad:bcr_radiation_uuid>
+                <rad:days_to_radiation_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3008313" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_started_days_to" display_order="33" cde_ver="1.000">189</rad:days_to_radiation_therapy_start>
+                <rad:days_to_radiation_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3008333" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_ended_days_to" display_order="17" cde_ver="1.000">252</rad:days_to_radiation_therapy_end>
+                <rad:radiation_type preferred_name="radiation_therapy_type" display_order="4" cde="2842944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305237">EXTERNAL BEAM</rad:radiation_type>
+                <rad:radiation_type_notes preferred_name="radiation_type_other" display_order="999" cde="2195477" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="305238"/>
+                <rad:radiation_dosage preferred_name="radiation_total_dose" display_order="6" cde="2721441" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305240">11840</rad:radiation_dosage>
+                <rad:units preferred_name="radiation_adjuvant_units" display_order="7" cde="61446" cde_ver="3.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305241">cGy</rad:units>
+                <rad:numfractions preferred_name="radiation_adjuvant_fractions_total" display_order="8" cde="61465" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305242">30</rad:numfractions>
+                <rad:anatomic_treatment_site preferred_name="radiation_therapy_site" display_order="5" cde="2793522" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305239">Primary Tumor Field</rad:anatomic_treatment_site>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305235">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="305236"/>
+                <rad:radiation_treatment_ongoing preferred_name="radiation_therapy_ongoing_indicator" display_order="13" cde="2842745" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305246">NO</rad:radiation_treatment_ongoing>
+                <rad:course_number preferred_name="course_number" display_order="999" cde="2732184" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305234">1</rad:course_number>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305232">12</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305231">11</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="305233">2010</clin_shared:year_of_form_completion>
+            </rad:radiation>
+        </rad:radiations>
+    </brca:patient>
+</brca:tcga_bcr>

data/gdc_data_organized/02bed00f-bef7-4fb7-b243-540354990e45/nationwidechildrens.org_ssf.TCGA-A2-A0T1.xml

@@ -0,0 +1,93 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ssf:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/ssf/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/ssf/2.7/TCGA_BCR.SSF.xsd" schemaVersion="2.7" xmlns:ssf="http://tcga.nci/bcr/xml/ssf/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:ssf_disease="http://tcga.nci/bcr/xml/ssf_disease/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">C92235AF-4416-484B-8175-EB65F1190049</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">72.91.0</admin:batch_number>
+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+        <admin:patient_withdrawal>
+            <admin:withdrawn>false</admin:withdrawn>
+        </admin:patient_withdrawal>
+        <admin:program xsi:nil="true" xsd_ver="2.7"/>
+        <admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
+    </admin:admin>
+    <ssf:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A2-A0T1</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">02bed00f-bef7-4fb7-b243-540354990e45</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A2</shared:tissue_source_site>
+        <shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A0T1</shared:patient_id>
+        <shared:hiv_status preferred_name="hiv_status" display_order="9999" cde="2180464" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+        <ssf:tumor_samples>
+            <ssf:tumor_sample>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">c90925f3-2126-478f-b0d4-f3b2c50cfbf9</ssf:bcr_sample_uuid>
+                <shared:days_to_sample_procurement precision="day" xsd_ver="2.3" tier="" cde="" owner="TSS" procurement_status="Completed" preferred_name="" display_order="9999" cde_ver="">30</shared:days_to_sample_procurement>
+                <shared:method_of_sample_procurement preferred_name="tumor_sample_procurement_method" display_order="11" cde="3103514" cde_ver="1.000" xsd_ver="2.3" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165279">Excisional Biopsy</shared:method_of_sample_procurement>
+                <shared:other_method_of_sample_procurement preferred_name="cancer_procurement_method_other" display_order="12" cde="2006730" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="165280" xsi:nil="true"/>
+                <ssf:vessel_used preferred_name="tumor_sample_vessel_used" display_order="16" cde="3081940" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165281">Cryomold</ssf:vessel_used>
+                <ssf:other_vessel_used preferred_name="tumor_sample_ship_vessel_other" display_order="17" cde="3288137" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="165282"/>
+                <shared:maximum_tumor_dimension preferred_name="tumor_resected_max_dimension" display_order="9999" cde="64215" cde_ver="3.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                <ssf:tumor_weight preferred_name="tumor_sample_weight" display_order="23" cde="3081946" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165283">251</ssf:tumor_weight>
+                <ssf:sample_prescreened preferred_name="tumor_sample_prescreened_at_tss" display_order="19" cde="3081942" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165286">YES</ssf:sample_prescreened>
+                <shared:tumor_nuclei_percent preferred_name="tumor_nuclei_percent" display_order="24" cde="2841225" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165284">85</shared:tumor_nuclei_percent>
+                <shared:tumor_necrosis_percent preferred_name="necrosis_percent" display_order="25" cde="2841237" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165285">5</shared:tumor_necrosis_percent>
+                <ssf:days_to_pathology_review precision="day" xsd_ver="2.5" tier="2" cde="3288497" owner="TSS" procurement_status="Completed" preferred_name="tss_pathology_review_days_to" display_order="63" cde_ver="1.000">212</ssf:days_to_pathology_review>
+                <ssf:path_confirm_tumor_nuclei_metrics preferred_name="tumor_nuclei_requirements_indicator" display_order="64" cde="3288520" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165356">YES</ssf:path_confirm_tumor_nuclei_metrics>
+                <ssf:path_confirm_tumor_necrosis_metrics preferred_name="necrosis_requirements_indicator" display_order="65" cde="3288524" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165357">YES</ssf:path_confirm_tumor_necrosis_metrics>
+                <ssf:path_confirm_report_attached preferred_name="tss_pathology_submitted" display_order="66" cde="3288292" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165359">YES</ssf:path_confirm_report_attached>
+                <ssf:path_confirm_diagnosis_matching preferred_name="histologic_dx_consistent" display_order="68" cde="3288300" cde_ver="1.000" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165358">YES</ssf:path_confirm_diagnosis_matching>
+                <ssf:reason_path_confirm_diagnosis_not_matching preferred_name="histologic_dx_inconsistent_reason" display_order="69" cde="3288315" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <ssf:top_slide_submitted preferred_name="tumor_sample_top_slide_submitted" display_order="999" cde="3081944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165287">YES</ssf:top_slide_submitted>
+                <ssf:digital_image_submitted preferred_name="tumor_sample_image_submitted" display_order="999" cde="3081948" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165289">NO</ssf:digital_image_submitted>
+                <ssf:ffpe_tumor_slide_submitted preferred_name="ffpe_slide_submitted_indicator" display_order="9999" cde="3295811" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Completed" restricted="false">NO</ssf:ffpe_tumor_slide_submitted>
+                <ssf:submitted_for_lce preferred_name="tumor_sample_bcr_macrodissection" display_order="9999" cde="3288488" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <shared:other_dx preferred_name="history_other_malignancy" display_order="14" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165361">No</shared:other_dx>
+                <shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="15" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165361">No</shared:history_of_neoadjuvant_treatment>
+                <shared:consent_or_death_status preferred_name="patient_consent_status" display_order="72" cde="3288361" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165362">Consented</shared:consent_or_death_status>
+                <shared:days_to_consent precision="day" xsd_ver="2.5" tier="1" cde="3288498" owner="TSS" procurement_status="Completed" preferred_name="patient_consent_days_to" display_order="76" cde_ver="1.000">0</shared:days_to_consent>
+                <shared:country preferred_name="tumor_sample_procurement_country" display_order="13" cde="3203072" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="741117"/>
+                <ssf_disease:disease_details/>
+                <ssf:tumor_histologies>
+                    <ssf:tumor_histology>
+                        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165272">Infiltrating Ductal Carcinoma</shared:histological_type>
+                        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                        <shared:histological_percentage preferred_name="histologic_diagnosis_percent" display_order="9999" cde="3729998" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                        <shared:tumor_morphology_percentage preferred_name="" display_order="9999" cde="3729984" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                    </ssf:tumor_histology>
+                </ssf:tumor_histologies>
+                <ssf:tumor_locations>
+                    <ssf:tumor_focality preferred_name="tumor_focality" display_order="9999" cde="3174022" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <ssf:laterality preferred_name="" display_order="9999" cde="4742852" cde_ver="" xsd_ver="2.6" tier="" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165275">Right</ssf:laterality>
+                    <ssf:tumor_location>
+                        <ssf:site_of_disease preferred_name="" display_order="9999" cde="4742851" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165275">Breast</ssf:site_of_disease>
+                        <ssf:site_of_disease_text preferred_name="" display_order="9999" cde="4742871" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                        <ssf:site_of_disease_description preferred_name="" display_order="9999" cde="4742918" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="165275"/>
+                    </ssf:tumor_location>
+                </ssf:tumor_locations>
+            </ssf:tumor_sample>
+        </ssf:tumor_samples>
+        <ssf:normal_controls>
+            <ssf:normal_control>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">20ef97c3-a55c-432f-a80d-1e70e7bd3d2c</ssf:bcr_sample_uuid>
+                <ssf:method_of_normal_sample_procurement preferred_name="normal_control_method" display_order="50" cde="3288147" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="165320"/>
+                <ssf:other_method_of_normal_sample_procurement preferred_name="normal_control_method_other" display_order="51" cde="3288151" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="165321"/>
+                <ssf:days_to_normal_sample_procurement precision="day" xsd_ver="2.3" tier="1" cde="3288496" owner="TSS" procurement_status="Not Available" preferred_name="normal_control_procurement_days_to" display_order="55" cde_ver="1.000"/>
+                <ssf:normal_sample_site_proximity_to_tumor preferred_name="normal_control_proximity_to_tumor" display_order="59" cde="3088708" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="165322"/>
+                <ssf:ncedna_dna_conc preferred_name="normal_control_DNA_concentration" display_order="48" cde="3288187" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165313">0.7477</ssf:ncedna_dna_conc>
+                <ssf:ncedna_dna_qm preferred_name="normal_control_DNA_quant_method" display_order="47" cde="3288186" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165312">Spec (NanoDrop)</ssf:ncedna_dna_qm>
+                <ssf:ncedna_dna_qty preferred_name="normal_control_DNA_quantity" display_order="46" cde="3288185" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165311">20</ssf:ncedna_dna_qty>
+                <ssf:ncedna_dna_vol preferred_name="normal_control_DNA_volume" display_order="49" cde="3288188" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="165314">26.7</ssf:ncedna_dna_vol>
+                <ssf:normal_control_locations>
+                    <ssf:normal_control_location>
+                        <ssf:normal_tissue_anatomic_site preferred_name="" display_order="57" cde="4132152" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="165315"/>
+                        <ssf:other_anatomic_site_normal_tissue preferred_name="normal_control_site_other" display_order="58" cde="3288189" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="165316"/>
+                    </ssf:normal_control_location>
+                </ssf:normal_control_locations>
+            </ssf:normal_control>
+        </ssf:normal_controls>
+    </ssf:patient>
+</ssf:tcga_bcr>

data/gdc_data_organized/8e159b50-8136-42d4-b9c7-d579a74e4931/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.grch38.seg.v2.txt

@@ -0,0 +1,344 @@
+GDC_Aliquot	Chromosome	Start	End	Num_Probes	Segment_Mean
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data/gdc_data_organized/8e159b50-8136-42d4-b9c7-d579a74e4931/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.grch38.seg.v2.txt

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+49d20029-a697-4499-8ef4-e87c04dfa2dc	X	251810	155952689	83609	0.0172
+49d20029-a697-4499-8ef4-e87c04dfa2dc	Y	2782397	56872112	6635	-2.5129

data/gdc_data_organized/8e159b50-8136-42d4-b9c7-d579a74e4931/TCGA-BRCA.49d20029-a697-4499-8ef4-e87c04dfa2dc.ascat3.allelic_specific.seg.txt

@@ -0,0 +1,35 @@
+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr1	61735	121741181	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr1	143285278	248930189	4	3	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr2	12784	183357061	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr2	183358161	186024533	2	2	0
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr2	186025395	242147305	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr3	18667	27082210	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr3	27082226	27611410	1	1	0
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr3	27611754	198169247	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr4	12281	190106768	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr5	15532	181363319	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr6	149661	71774993	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr6	71779279	170741917	1	1	0
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr7	43259	159334314	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr8	81254	145072769	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr9	46587	138200944	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr10	26823	133769379	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr11	198572	135074876	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr12	51460	133201603	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr13	18452809	114342922	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr14	18225647	67715604	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr14	67715892	92892676	1	1	0
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr14	92892708	106877229	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr15	19811075	37359070	1	1	0
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr15	37361857	101928837	2	1	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr16	10777	36048855	3	2	1
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr16	46429870	90221127	1	1	0
+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr17	150733	19572657	1	1	0
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+49d20029-a697-4499-8ef4-e87c04dfa2dc	chr18	48133	80257174	2	1	1
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data/gdc_data_organized/8e159b50-8136-42d4-b9c7-d579a74e4931/TCGA-E2-A10F-01A-01-TS1.2e848f27-cde2-4da2-baaf-f4de637f891c.svs

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data/gdc_data_organized/8e159b50-8136-42d4-b9c7-d579a74e4931/TCGA-E2-A10F-01A-11D-A894-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt

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+GDC_Aliquot_ID	Chromosome	Start	End	Num_Probes	Segment_Mean
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data/gdc_data_organized/8e159b50-8136-42d4-b9c7-d579a74e4931/nationwidechildrens.org_ssf.TCGA-E2-A10F.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<ssf:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/ssf/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/ssf/2.7/TCGA_BCR.SSF.xsd" schemaVersion="2.7" xmlns:ssf="http://tcga.nci/bcr/xml/ssf/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:ssf_disease="http://tcga.nci/bcr/xml/ssf_disease/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">4EAC4A66-0E0C-4612-ADAF-00FFFC72CE74</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">80.84.0</admin:batch_number>
+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+        <admin:patient_withdrawal>
+            <admin:withdrawn>false</admin:withdrawn>
+        </admin:patient_withdrawal>
+        <admin:program xsi:nil="true" xsd_ver="2.7"/>
+        <admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
+    </admin:admin>
+    <ssf:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-E2-A10F</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">8e159b50-8136-42d4-b9c7-d579a74e4931</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">E2</shared:tissue_source_site>
+        <shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A10F</shared:patient_id>
+        <shared:hiv_status preferred_name="hiv_status" display_order="9999" cde="2180464" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+        <ssf:tumor_samples>
+            <ssf:tumor_sample>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2666d91b-06ca-4987-84a1-4002befc4d8a</ssf:bcr_sample_uuid>
+                <shared:days_to_sample_procurement precision="day" xsd_ver="2.3" tier="" cde="" owner="TSS" procurement_status="Completed" preferred_name="" display_order="9999" cde_ver="">28</shared:days_to_sample_procurement>
+                <shared:method_of_sample_procurement preferred_name="tumor_sample_procurement_method" display_order="11" cde="3103514" cde_ver="1.000" xsd_ver="2.3" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231115">Tumor Resection</shared:method_of_sample_procurement>
+                <shared:other_method_of_sample_procurement preferred_name="cancer_procurement_method_other" display_order="12" cde="2006730" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="231116" xsi:nil="true"/>
+                <ssf:vessel_used preferred_name="tumor_sample_vessel_used" display_order="16" cde="3081940" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231117">Cryovial</ssf:vessel_used>
+                <ssf:other_vessel_used preferred_name="tumor_sample_ship_vessel_other" display_order="17" cde="3288137" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="231118"/>
+                <shared:maximum_tumor_dimension preferred_name="tumor_resected_max_dimension" display_order="9999" cde="64215" cde_ver="3.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                <ssf:tumor_weight preferred_name="tumor_sample_weight" display_order="23" cde="3081946" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231119">200</ssf:tumor_weight>
+                <ssf:sample_prescreened preferred_name="tumor_sample_prescreened_at_tss" display_order="19" cde="3081942" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231122">YES</ssf:sample_prescreened>
+                <shared:tumor_nuclei_percent preferred_name="tumor_nuclei_percent" display_order="24" cde="2841225" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231120">85</shared:tumor_nuclei_percent>
+                <shared:tumor_necrosis_percent preferred_name="necrosis_percent" display_order="25" cde="2841237" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231121">0</shared:tumor_necrosis_percent>
+                <ssf:days_to_pathology_review precision="day" xsd_ver="2.5" tier="2" cde="3288497" owner="TSS" procurement_status="Completed" preferred_name="tss_pathology_review_days_to" display_order="63" cde_ver="1.000">797</ssf:days_to_pathology_review>
+                <ssf:path_confirm_tumor_nuclei_metrics preferred_name="tumor_nuclei_requirements_indicator" display_order="64" cde="3288520" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231192">YES</ssf:path_confirm_tumor_nuclei_metrics>
+                <ssf:path_confirm_tumor_necrosis_metrics preferred_name="necrosis_requirements_indicator" display_order="65" cde="3288524" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231193">YES</ssf:path_confirm_tumor_necrosis_metrics>
+                <ssf:path_confirm_report_attached preferred_name="tss_pathology_submitted" display_order="66" cde="3288292" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231195">YES</ssf:path_confirm_report_attached>
+                <ssf:path_confirm_diagnosis_matching preferred_name="histologic_dx_consistent" display_order="68" cde="3288300" cde_ver="1.000" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231194">YES</ssf:path_confirm_diagnosis_matching>
+                <ssf:reason_path_confirm_diagnosis_not_matching preferred_name="histologic_dx_inconsistent_reason" display_order="69" cde="3288315" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <ssf:top_slide_submitted preferred_name="tumor_sample_top_slide_submitted" display_order="999" cde="3081944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231123">YES</ssf:top_slide_submitted>
+                <ssf:digital_image_submitted preferred_name="tumor_sample_image_submitted" display_order="999" cde="3081948" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231125">NO</ssf:digital_image_submitted>
+                <ssf:ffpe_tumor_slide_submitted preferred_name="ffpe_slide_submitted_indicator" display_order="9999" cde="3295811" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Completed" restricted="false">NO</ssf:ffpe_tumor_slide_submitted>
+                <ssf:submitted_for_lce preferred_name="tumor_sample_bcr_macrodissection" display_order="9999" cde="3288488" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <shared:other_dx preferred_name="history_other_malignancy" display_order="14" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231197">No</shared:other_dx>
+                <shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="15" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231197">No</shared:history_of_neoadjuvant_treatment>
+                <shared:consent_or_death_status preferred_name="patient_consent_status" display_order="72" cde="3288361" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231198">Consented</shared:consent_or_death_status>
+                <shared:days_to_consent precision="day" xsd_ver="2.5" tier="1" cde="3288498" owner="TSS" procurement_status="Completed" preferred_name="patient_consent_days_to" display_order="76" cde_ver="1.000">8</shared:days_to_consent>
+                <shared:country preferred_name="tumor_sample_procurement_country" display_order="13" cde="3203072" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="741156"/>
+                <ssf_disease:disease_details/>
+                <ssf:tumor_histologies>
+                    <ssf:tumor_histology>
+                        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231108">Infiltrating Lobular Carcinoma</shared:histological_type>
+                        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                        <shared:histological_percentage preferred_name="histologic_diagnosis_percent" display_order="9999" cde="3729998" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                        <shared:tumor_morphology_percentage preferred_name="" display_order="9999" cde="3729984" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                    </ssf:tumor_histology>
+                </ssf:tumor_histologies>
+                <ssf:tumor_locations>
+                    <ssf:tumor_focality preferred_name="tumor_focality" display_order="9999" cde="3174022" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <ssf:laterality preferred_name="" display_order="9999" cde="4742852" cde_ver="" xsd_ver="2.6" tier="" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231111">Left</ssf:laterality>
+                    <ssf:tumor_location>
+                        <ssf:site_of_disease preferred_name="" display_order="9999" cde="4742851" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231111">Breast</ssf:site_of_disease>
+                        <ssf:site_of_disease_text preferred_name="" display_order="9999" cde="4742871" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                        <ssf:site_of_disease_description preferred_name="" display_order="9999" cde="4742918" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="231111"/>
+                    </ssf:tumor_location>
+                </ssf:tumor_locations>
+            </ssf:tumor_sample>
+        </ssf:tumor_samples>
+        <ssf:normal_controls>
+            <ssf:normal_control>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">f7879f35-6035-4b08-901e-efc247a29aeb</ssf:bcr_sample_uuid>
+                <ssf:method_of_normal_sample_procurement preferred_name="normal_control_method" display_order="50" cde="3288147" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231171">Blood Draw</ssf:method_of_normal_sample_procurement>
+                <ssf:other_method_of_normal_sample_procurement preferred_name="normal_control_method_other" display_order="51" cde="3288151" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="231172"/>
+                <ssf:days_to_normal_sample_procurement precision="day" xsd_ver="2.3" tier="1" cde="3288496" owner="TSS" procurement_status="Completed" preferred_name="normal_control_procurement_days_to" display_order="55" cde_ver="1.000">8</ssf:days_to_normal_sample_procurement>
+                <ssf:normal_sample_site_proximity_to_tumor preferred_name="normal_control_proximity_to_tumor" display_order="59" cde="3088708" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="231173"/>
+                <ssf:ncedna_dna_conc preferred_name="normal_control_DNA_concentration" display_order="48" cde="3288187" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231164">.2847</ssf:ncedna_dna_conc>
+                <ssf:ncedna_dna_qm preferred_name="normal_control_DNA_quant_method" display_order="47" cde="3288186" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231163">nano drop &amp; pico green</ssf:ncedna_dna_qm>
+                <ssf:ncedna_dna_qty preferred_name="normal_control_DNA_quantity" display_order="46" cde="3288185" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231162">20</ssf:ncedna_dna_qty>
+                <ssf:ncedna_dna_vol preferred_name="normal_control_DNA_volume" display_order="49" cde="3288188" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="231165">71</ssf:ncedna_dna_vol>
+                <ssf:normal_control_locations>
+                    <ssf:normal_control_location>
+                        <ssf:normal_tissue_anatomic_site preferred_name="" display_order="57" cde="4132152" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="231166"/>
+                        <ssf:other_anatomic_site_normal_tissue preferred_name="normal_control_site_other" display_order="58" cde="3288189" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="231167"/>
+                    </ssf:normal_control_location>
+                </ssf:normal_control_locations>
+            </ssf:normal_control>
+        </ssf:normal_controls>
+    </ssf:patient>
+</ssf:tcga_bcr>

data/gdc_data_organized/8f34cb4c-5798-47a0-89a1-f0ee26a8ae93/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.nocnv_grch38.seg.v2.txt

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data/gdc_data_organized/8f34cb4c-5798-47a0-89a1-f0ee26a8ae93/TCGA-A2-A0YK-01A-02-BSB.f0b7203e-5c9c-4039-8e1d-cfc683d53a79.svs

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+AGID00013	88	1008-1/ab32060	Old	BID	0.70294
+AGID00180	90	1036-1/ab32158	Old	BIM	0.092814
+AGID00221	1311	610978	Set163	BiP-GRP78	-0.337519236429401
+AGID00373	2194	07-507	Set163	BMK1-Erk5_pT218_Y220	-0.221973646815288
+AGID00355	92	1647/ab33899	Old	BRAF	-0.70135
+AGID00014	94	2696	Old	BRAF_pS445	-0.3296
+AGID00445	761	9012	Old	BRCA2	0.1716
+AGID00266	1567	13440	Old	BRD4	-0.87766
+AGID00168	1146	2865	Set163	c-Abl_pY412	0.496155587571919
+AGID00278	1615	3130	Set163	c-IAP2	0.140811210754431
+AGID00345	1990	5649	Old	CA9	NA
+AGID00265	1565	2862	Old	CABL	-0.026302
+AGID00429	2407	2679	Set163	Calnexin	-0.268613933948694
+AGID00176	1165	9496	Set163	Caspase-8-cleaved	0.473411237683198
+AGID00623	111	9665	Old	CASPASE3	-0.93897
+AGID00015	109	9491	Old	CASPASE7CLEAVEDD198	-0.35402
+AGID00118	951	9746	Old	CASPASE8	0.27604
+AGID00537	935	551246	Old	CASPASE9	NA
+AGID00016	114	3238	Old	CAVEOLIN1	1.0023
+AGID00358	2100	ab76000	Set163	CD134	0.778294882017761
+AGID00303	1737	826701	Set163	CD171	0.187936297007931
+AGID00410	125	1632-1/ab78237	Old	CD20	0.31751
+AGID00220	1308	ab28340	Old	CD26	-0.13838
+AGID00191	1206	610467	Set163	CD29	0.107545967277847
+AGID00017	127	M0823	Old	CD31	0.17577
+AGID00369	2174	ab108403	Set163	CD38	0.41890633034831
+AGID00359	2104	ab133616	Set163	CD4	0.330775061769351
+AGID00411	1398	3570	Set163	CD44	0.223501198173811
+AGID00237	1352	M070101-2	Set163	CD45	0.364916154219619
+AGID00115	937	611016	Old	CD49B	0.00024665
+AGID02171	2482	91882	Set163	CD86	0.245216308860747
+AGID00329	1873	4688	Set163	cdc25C	-0.213148668637963
+AGID00227	1332	4651	Set163	Cdc42	0.245376101193864
+AGID00422	2396	3387	Set163	Cdc6	0.1720762045421
+AGID00501	1007	9112	Old	CDK1	-0.15869
+AGID00293	1658	ab32384	Set163	CDK1_pT14	-1.27162367318674
+AGID00314	1783	4539	Old	CDK1_pY15	-0.37365
+AGID00423	2397	8064	Set163	CDT1	0.78467087305317
+AGID02101	2348	15102	Set163	cGAS	0.0434863241099852
+AGID00447	2410	13460	Set163	CHD1L	-0.588985509956671
+AGID00189	1203	2360	Old	CHK1	0.26284
+AGID00234	1348	ab79758	Old	CHK1_pS296	-0.10723
+AGID00107	903	2348	Old	CHK1_pS345	0.1958
+AGID00018	146	3440	Old	CHK2	-0.77854
+AGID00019	147	2197	Old	CHK2_pT68	0.048076
+AGID00527	2078	4952	Old	CIAP	-0.34084
+AGID00350	2018	3793	Set163	CIITA	0.190516323070264
+AGID00434	155	9164	Old	CJUN_pS73	0.18315
+AGID00020	157	1522-1/ab32363	Old	CKIT	1.0424
+AGID00400	852	NB100-91714	Old	CLAUDIN7	-0.74545
+AGID00466	726	3127	Old	CMET	0.46774
+AGID00079	727	3129	Old	CMET_pY1235	0.11645
+AGID00167	161	9402	Old	CMYC	0.35315
+AGID00292	1656	11130-1-AP	Old	COG3	-0.76324
+AGID00021	171	sc-20649	Old	COLLAGENVI	2.4889
+AGID00141	1069	459230	Old	COMPLEXIISUBUNIT30	NA
+AGID00267	1568	3512	Set163	Connexin-43	-0.798213946217397
+AGID00269	1571	6434	Set163	Coup-TFII	0.247976320782878
+AGID00150	1116	4850	Set163	Cox-IV	-0.465814333409328
+AGID00195	1218	4842	Set163	Cox2	0.153476326813259
+AGID00188	803	05-739	Old	CRAF	-0.36159
+AGID00022	179	9427	Old	CRAF_pS338	0.18622
+AGID00023	181	9197	Set163	Creb	0.818095202251568
+AGID00393	2334	9198	Set163	CREB_pS133	-0.0148815432213832
+AGID00365	2155	4980	Set163	CSK	0.312386285224429
+AGID00367	2160	9201	Set163	CtIP	0.364960984823132
+AGID00536	2096	ab107198	Old	CTLA4	NA
+AGID00025	198	2936	Set163	Cyclin-D3	-0.2624637954579
+AGID00024	192	1495-1/ab32053	Old	CYCLINB1	-1.2099
+AGID00382	194	sc-718	Old	CYCLIND1	0.59407
+AGID00437	199	sc-25303	Old	CYCLINE1	-0.82254
+AGID00449	202	1142-1	Old	CYCLINE2	-0.056961
+AGID00209	1257	ab110324	Set163	Cyclophilin-F	-1.02492396514031
+AGID00247	1379	ab48389	Set163	D-a-Tubulin	0.030921314622533
+AGID00308	1770	GTX10524	Set163	DAPK1_pS308	0.063686268796841
+AGID00304	1744	ab51601	Set163	DAPK2	0.347461098360625
+AGID00343	1980	6998	Set163	DDB-1	-0.48841374679897
+AGID00427	2402	5583	Set163	DDR1	-0.0160394483937433
+AGID00428	2403	SAB4504671	Set163	DDR1_pY513	-0.846383700843313
+AGID00532	1273	Bast Lab	Old	DIRAS3	0.46463
+AGID00104	891	ab76008	Old	DJ1	-0.14415
+AGID02146	2452	4658	Set163	DM-Histone-H3	0.622520934604628
+AGID00386	1397	ab32521	Set163	DM-K9-Histone-H3	0.23252128894143
+AGID00352	2030	14649	Set163	DNA-Ligase-IV	0.0467210690751607
+AGID00407	2371	13609	Set163	DNA_POLG	-0.133573760523284
+AGID00399	2344	5032	Set163	DNMT1	-0.528303812786579
+AGID00409	2373	5391	Set163	DRP1	-0.366655248363132
+AGID00253	1406	5149	Old	DUSP4	0.020351
+AGID00334	1936	ab76310	Set163	DUSP6	0.154475988280203
+AGID00116	940	3218	Old	DVL3	-0.54267
+AGID00211	1261	sc-251	Old	E2F1	NA
+AGID00148	1099	3195	Old	ECADHERIN	-1.7675
+AGID00135	1060	2332	Old	EEF2	-1.4474
+AGID00136	1061	3692	Old	EEF2K	-0.14904
+AGID00152	1120	2232	Old	EGFR	-0.12737
+AGID00450	217	2234	Old	EGFR_pY1068	0.81344
+AGID00026	221	1124-1/ab32578	Old	EGFR_pY1173	0.57482
+AGID00078	722	9742	Old	EIF4E	-0.12742
+AGID00328	1871	ab76256	Set163	eIF4E_pS209	0.351856001935201
+AGID00154	1124	2498	Old	EIF4G	-0.55567
+AGID00027	228	9181	Set163	Elk1_pS383	0.556241324603852
+AGID00235	1350	M061329-2	Set163	EMA	-0.842544107235461
+AGID00394	2337	3810	Set163	Enolase-1	-0.173658913145617
+AGID00395	2338	8171	Set163	Enolase-2	0.14265133014903
+AGID00196	1219	GTX629542	Old	ENY2	-1.3148
+AGID00438	1849	A302-024A	Set163	EphA2	0.225596323070265
+AGID00552	2422	6347	Set163	EphA2_pS897	-0.149793673186741
+AGID00553	2423	12677	Set163	EphA2_pY588	-5.21732912414828e-05
+AGID00075	693	556347	Old	EPPK1	-0.63565
+AGID00335	238	RM-9101	Old	ERALPHA	2.4183
+AGID00029	241	1091-1/ab32396	Old	ERALPHA_pS118	-0.17836
+AGID00240	247	MS-671	Old	ERCC1	-0.18972
+AGID00239	1355	11331-1-AP	Old	ERCC5	-0.27795
+AGID00484	249	sc-154	Old	ERK2	-0.76617
+AGID00372	2193	3552	Set163	Erk5	-0.250723670552781
+AGID00405	2369	13826	Set163	ERRalpha	0.176151198173811
+AGID00187	1200	A303-501A	Old	ETS1	0.50684
+AGID00511	2492	2593	Set163	EVI1	0.206740718342758
+AGID00485	1284	4905	Old	EZH2	NA
+AGID00030	252	1700-1/ab40794	Set163	FAK	2.21429631821823
+AGID02151	2457	8556	Set163	FAK_pY397	0.278979714423556
+AGID00171	1156	3180	Old	FASN	-0.03249
+AGID00356	2085	500-P18/10775-082	Set163	FGF-basic	-0.288288678619282
+AGID00031	262	1574-1/ab45688	Old	FIBRONECTIN	0.71477
+AGID00339	1959	4403	Set163	FN14	-0.269968672796845
+AGID02152	2458	20459	Old	FOXM1	0.082924
+AGID00378	269	9467	Old	FOXO3A	0.38428
+AGID02197	2515	orb6051	Old	FOXO3A_pS318S321	-0.047009
+AGID02167	2475	PA5-64616	Set163	FRS2-alpha_pY196	0.111096331318716
+AGID02213	2575	ab124892	Set163	FTO	-0.991793674018517
+AGID02141	2446	12263	Old	G6PD	0.45192
+AGID00117	943	3239	Old	GAB2	-0.1899
+AGID00412	274	AM4300	Old	GAPDH	-2.8161
+AGID00086	764	558686	Old	GATA3	1.5611
+AGID00383	1578	4253	Old	GATA6	0.13675
+AGID00289	1634	12601-1-AP	Set163	GCLC	0.634461302249856
+AGID00305	1745	ab124827	Set163	GCLM	0.217146321961229
+AGID00212	1263	3305	Old	GCN5L2	-1.1231
+AGID00270	1579	3538	Set163	Gli1	-0.617184076598362
+AGID00263	1520	ab69838	Set163	Gli3	0.134335177090339
+AGID00548	2530	3660	Set163	Glucocorticoid-Receptor	-0.153848681114612
+AGID00387	1617	12793	Set163	Glutamate-D1-2	-0.431014810294389
+AGID00262	1491	ab156876	Set163	Glutaminase	0.363756262766461
+AGID00319	1807	4275	Set163	Granzyme-B	0.234261226558186
+AGID00368	2169	ab183737	Set163	GRB7	-0.329114453601009
+AGID00396	2339	3593	Set163	Grp75	0.153561258061725
+AGID00174	1163	9315	Set163	GSK-3B	-0.69544455147406
+AGID00502	1082	9336	Old	GSK3_pS9	-0.37034
+AGID00033	284	sc-7291	Old	GSK3ALPHABETA	-0.58711
+AGID00034	285	9331	Old	GSK3ALPHABETA_pS21S9	-0.36076
+AGID00129	1035	3886	Old	GYS	NA
+AGID00130	1036	3891	Old	GYS_pS641	NA
+AGID01354	1342	9718	Set163	H2AX_pS139	0.0633262826597843
+AGID00363	1409	MA1-2022	Set163	H2AX_pS140	-0.223198738784456
+AGID00131	1038	MS-325-P1	Old	HER2	-0.4073
+AGID00142	299	06-229	Old	HER2_pY1248	0.48453
+AGID00110	911	sc-285	Old	HER3	0.78398
+AGID00080	728	4791	Old	HER3_pY1289	0.24996
+AGID00103	890	2573	Old	HEREGULIN	0.23445
+AGID00271	1582	11988	Set163	HES1	-0.232743910243063
+AGID00397	2340	2024	Set163	Hexokinase-I	-0.258463921957249
+AGID00442	1023	2867	Set163	Hexokinase-II	-0.0207952335991077
+AGID00419	1402	610958	Old	HIF1ALPHA	NA
+AGID00205	1250	ab1791	Set163	Histone-H3	0.407536149228959
+AGID00398	2341	3377	Set163	Histone-H3_pS10	0.105091193841641
+AGID00332	1901	ab128959	Set163	HLA-DQA1	-0.142015047974419
+AGID00333	1902	14832-1-AP	Set163	HMHA1	0.511435828163236
+AGID00035	321	2402	Set163	HSP27	-0.117198732684761
+AGID00036	323	2401	Set163	HSP27_pS82	-0.584913684623669
+AGID00320	1808	12165	Set163	HSP60	-0.163438895990226
+AGID00037	325	4872	Old	HSP70	1.8832
+AGID00366	2158	86630	Set163	IDO	0.696450832330783
+AGID00197	1221	3024	Old	IGF1R_pY1135Y1136	0.51936
+AGID00038	335	3922	Old	IGFBP2	0.70743
+AGID00090	793	611504	Set163	IGFBP3	-0.202463998064799
+AGID00039	336	3027	Set163	IGFRb	-0.138233671107299
+AGID00336	1949	12153	Set163	IL-6	0.489300998547444
+AGID02221	2583	57145	Set163	IMP3	-0.144843817292035
+AGID02153	2459	14543	Old	INPP4B	0.33048
+AGID00272	1586	3025	Set163	IR-b	-0.694903712280242
+AGID00519	2519	4302	Set163	IRF-3	-0.561618426022414
+AGID00520	2520	4947	Set163	IRF-3_pS396	-0.317554214465306
+AGID00223	1316	sc-497	Old	IRF1	-0.19944
+AGID00092	802	06-248	Old	IRS1	0.41781
+AGID00040	371	4502	Set163	IRS2	-0.182384138981595
+AGID00250	1394	sc-13157	Old	JAB1	0.41282
+AGID00256	1413	ab109536	Set163	Jagged1	0.334611852275585
+AGID00177	1166	3230	Old	JAK2	-0.59235
+AGID00758	377	4671	Old	JNK_pT183Y185	0.32766
+AGID02136	2439	PA5-28262	Old	JNK2	-0.26105
+AGID00307	1757	ab10484	Set163	KAP1	-0.249279184443375
+AGID00528	904	2180	Old	KU80	-0.85103
+AGID00375	2237	HPA028732	Set163	LAD1	-0.245158669157823
+AGID00290	1643	IHC-00439	Set163	Lasu1	-0.533078697750144
+AGID00279	1618	4108	Set163	LC3A-B	0.146101056875771
+AGID00042	397	2752	Old	LCK	0.71996
+AGID00119	976	3582	Old	LDHA	NA
+AGID00533	977	ab85319	Old	LDHB	NA
+AGID00529	1477	3050	Old	LKB1	0.04828
+AGID00244	1367	2568	Set163	LRP6_pS1490	-0.145648695774674
+AGID00439	2424	2796	Set163	Lyn	0.263031267315239
+AGID02154	2460	4370	Old	MAPK_pT202Y204	0.0094048
+AGID00198	1222	5453	Set163	Mcl-1	-0.400204723928294
+AGID00288	1633	AB3314P	Set163	MCT4	-0.806063808350437
+AGID00175	1164	3521	Set163	MDM2_pS166	-0.038598672069041
+AGID00044	417	1235-1/ab32576	Old	MEK1	0.1213
+AGID00143	1076	9154	Old	MEK1_pS217S221	-0.22233
+AGID00201	1243	9125	Set163	MEK2	-0.318924147091416
+AGID00361	2118	ab51061	Set163	MelanA	-0.0176386957746746
+AGID00362	2119	ab137078	Set163	Melanoma-gp100	0.359356224643367
+AGID00337	1951	12711	Set163	MERIT40	-0.637879309625723
+AGID00338	1952	12110	Set163	MERIT40_pS29	0.00025632993242184
+AGID02212	2574	ab195352	Set163	METTL3	-0.261553678038771
+AGID00225	1323	sc-20121	Set163	MIF	0.202706327575721
+AGID00137	1062	WH0054206M1	Old	MIG6	0.075322
+AGID00403	2117	ab20663	Set163	MITF	0.330950937669967
+AGID00503	1067	ab3298	Old	MITOCHONDRIA	NA
+AGID00321	1809	14739	Set163	Mitofusin-1	-0.126112465694886
+AGID00322	1810	11925	Set163	Mitofusin-2	-0.189023799686097
+AGID00389	2324	3515	Set163	MLH1	-0.319913817292034
+AGID00312	1780	14993	Set163	MLKL	1.88770617348911
+AGID00402	2359	MAB3328	Set163	MMP14	-0.858063734183692
+AGID00045	435	4022	Set163	MMP2	1.06277346675126
+AGID00122	1005	2195	Set163	Mnk1	-0.22277488702574
+AGID00331	1899	sc-377312	Set163	MR1	0.777341141613005
+AGID00273	1589	ab103319	Set163	MRAP	0.180866331180086
+AGID00530	440	4847	Old	MRE11	0.33338
+AGID00390	905	2850	Old	MSH2	-0.68299
+AGID00138	1063	22030002	Old	MSH6	-0.87131
+AGID00299	1675	ab76148	Set163	MSI2	-0.121068668741935
+AGID00232	1344	ab14705	Set163	MTCO1	-1.31406535365211
+AGID00046	444	2983	Old	MTOR	-0.64456
+AGID00047	446	2971	Old	MTOR_pS2448	-0.18618
+AGID00204	1247	H00009788-M01A	Set163	MTSS1	-0.137858848267047
+AGID00401	1139	21370002	Old	MYH11	2.5903
+AGID00291	1647	3403	Old	MYOSINIIA	-0.77621
+AGID00173	1160	5026	Old	MYOSINIIA_pS1943	-0.31098
+AGID00318	1803	4282	Set163	Myt1	-0.317633927918314
+AGID00216	1274	5795-1/ab129189	Old	NAPSINA	NA
+AGID00418	452	4061	Old	NCADHERIN	0.70326
+AGID00156	1126	3217	Old	NDRG1_pT346	0.37727
+AGID02133	2436	PA5-45913	Set163	NDUFB4	0.433356328892701
+AGID00134	1046	22710002	Old	NF2	-0.76215
+AGID00048	457	3033	Old	NFKBP65_pS536	0.089101
+AGID02155	2461	3608	Old	NOTCH1	0.3884
+AGID00340	1969	4147	Set163	Notch1-cleaved	0.23618108099729
+AGID00087	767	sc-5593	Set163	Notch3	0.0460963032462552
+AGID00258	1420	3187	Set163	NQO1	-0.471358858386995
+AGID00162	1136	sc-31	Old	NRAS	0.64464
+AGID00257	1419	12721	Old	NRF2	NA
+AGID00297	1669	2750	Set163	Oct-4	0.260241317533751
+AGID00420	466	1712-1/ab40803	Old	P16INK4A	-0.90116
+AGID00384	470	sc-6246	Old	P21	0.23303
+AGID00105	897	1591-1/ab32034	Old	P27	0.34406
+AGID00096	842	AF1555	Old	P27_pT157	-0.22135
+AGID00099	878	ab64949	Old	P27_pT198	0.013183
+AGID00181	1175	9228	Set163	p38-a	-0.245614785271789
+AGID00098	479	9211	Old	P38_pT180Y182	0.32539
+AGID00049	478	9212	Old	P38MAPK	-0.026986
+AGID00151	1119	4695	Set163	p44-42-MAPK	-0.00544868388720044
+AGID00050	481	9282	Old	P53	-0.18919
+AGID00490	1187	610833	Old	P62LCKLIGAND	-0.67369
+AGID00545	1415	ab53039	Old	P63	NA
+AGID00052	494	9205	Old	P70S6K_pT389	0.42038
+AGID00051	493	1494-1/ab32529	Old	P70S6K1	-0.96451
+AGID00085	759	9347	Old	P90RSK	-0.0021148
+AGID00531	770	9344	Old	P90RSK_pT359S363	-0.08143
+AGID00182	1178	9346	Set163	p90RSK_pT573	-0.2171137954579
+AGID00053	499	612024	Old	PAI1	0.14095
+AGID00224	1322	HPA035895	Set163	PAICS	-0.580173670552782
+AGID00323	1811	2602	Set163	PAK1	-0.620384099472214
+AGID02199	2517	PA5-69540	Set163	PAK4	-0.244108785190658
+AGID00245	1370	4336-BPC-100	Set163	PAR	0.72412586905891
+AGID00374	2209	66564	Set163	PARG	0.345196053782602
+AGID00370	1372	sc-7150	Old	PARP1	-1.2618
+AGID00468	501	9546	Old	PARPCLEAVED	0.34255
+AGID00274	1591	ab53715	Set163	Patched	0.197216292502474
+AGID00513	2486	60433	Set163	PAX6	0.161586224643367
+AGID00441	1621	9857	Set163	PAX8	0.137819945102778
+AGID00054	504	2542	Old	PAXILLIN	-0.23167
+AGID00055	509	2130	Old	PCADHERIN	-0.058876
+AGID00248	511	ab29	Old	PCNA	-0.01297
+AGID00413	2095	43248	Old	PDCD1	NA
+AGID00094	816	600-401-965	Old	PDCD4	-1.0409
+AGID00385	1225	3169	Set163	PDGFRB	0.124261317533751
+AGID00210	1258	ab110332	Set163	PDH	-0.0124498292432902
+AGID00324	1817	3205	Set163	PDHA1	0.376510652112564
+AGID00280	1622	3820	Set163	PDHK1	0.119416320782879
+AGID00056	515	3062	Old	PDK1	0.37069
+AGID00057	516	3061	Old	PDK1_pS241	-0.40442
+AGID00300	1234	sc-19090	Old	PDL1	0.010013
+AGID00124	1017	2780	Old	PEA15	0.090824
+AGID00125	1018	44-836G	Old	PEA15_pS116	0.52315
+AGID00440	2429	3192	Set163	PERK	-0.352194286275334
+AGID02207	2569	ab192876	Set163	PGM1	-0.1643843238439
+AGID00281	1623	13428	Set163	PHGDH	-0.278664295563503
+AGID00425	2399	22789-1-AP	Set163	PHLPP	0.406516328268868
+AGID00226	1330	sc-376412	Set163	PI3K-p110-b	0.11545631683194
+AGID00093	808	4255	Old	PI3KP110ALPHA	-0.24893
+AGID00058	523	06-195	Old	PI3KP85	-0.20956
+AGID00296	1667	5675	Set163	PKA-a	-0.404778815030642
+AGID00259	1426	9375	Set163	PKC-a-b-II_pT638_T641	0.0109863241099846
+AGID00172	529	05-154	Old	PKCALPHA	-0.51227
+AGID00460	530	06-822	Old	PKCALPHA_pS657	-0.1894
+AGID00114	932	07-875	Old	PKCDELTA_pS664	-0.14382
+AGID00163	1137	9371	Old	PKCPANBETAII_pS660	-0.49148
+AGID00126	1025	4053	Old	PKM2	NA
+AGID00512	2489	5690	Set163	PLC-gamma1	-0.446424506126651
+AGID02138	2441	GTX133463	Set163	PLC-gamma2_pY759	0.404711161575642
+AGID00084	754	4513	Set163	PLK1	-0.736653740352701
+AGID00203	1246	22510002	Set163	PMS2	-0.333173675890015
+AGID00207	1254	ab14734	Set163	Porin	-0.0655536696516903
+AGID00381	549	1483-1/ab32085	Old	PR	-0.11338
+AGID00081	738	AHO1031	Set163	PRAS40	-0.117113668819914
+AGID00082	739	44-1100G	Old	PRAS40_pT246	-0.13075
+AGID00424	2398	OAAF05458	Set163	PRC1_pT481	0.244206305187067
+AGID00492	1205	HPA007730	Old	PRDX1	-0.079388
+AGID00190	1204	ab102739	Old	PREX1	0.064931
+AGID00061	566	9552	Old	PTEN	-0.37087
+AGID00364	2154	ab76942	Set163	PTPN12	-0.0732638312242919
+AGID00218	1290	4976	Set163	Puma	-0.201648668603305
+AGID00200	1242	SAB2900066	Old	PYGB	NA
+AGID00535	1494	ab61013	Old	PYGL	NA
+AGID00202	1245	H00005837-M10	Old	PYGM	NA
+AGID00275	1607	3291	Set163	Pyk2_pY402	0.267730745687406
+AGID00145	1083	3539	Old	RAB11	0.99294
+AGID00169	1150	4314	Old	RAB25	0.050452
+AGID00342	1979	24555	Set163	Rad23A	-0.538808755246701
+AGID00261	987	05-525	Old	RAD50	-0.25218
+AGID00360	579	NA71	Old	RAD51	0.31656
+AGID00158	1128	2280	Old	RAPTOR	-0.141
+AGID00059	552	9309	Old	RB	0.53969
+AGID00060	557	9308	Old	RB_pS807S811	-0.88429
+AGID00164	1138	21390002	Old	RBM15	-1.3923
+AGID00547	735	3221	Old	RET_pY905	NA
+AGID00097	847	MAB3426	Set163	Rheb	0.249996235872351
+AGID00159	1129	2114	Old	RICTOR	0.42604
+AGID00160	1130	3806	Old	RICTOR_pT1135	0.54383
+AGID00282	1624	4926	Set163	RIP	-0.168048713519242
+AGID00283	1625	13526	Set163	RIP3	0.247485577382659
+AGID00416	1368	2208	Set163	RPA32	-0.124008699794928
+AGID00246	1375	A300-245A	Set163	RPA32_pS4_S8	-0.264994772864461
+AGID00341	1978	3388	Set163	RRM1	0.00599110958960823
+AGID00344	1981	PA5-27856	Set163	RRM2	-0.121870330804263
+AGID00554	2425	8408	Set163	RSK1	-0.401461523293428
+AGID00353	2031	13018	Set163	S100A4	0.444381320167711
+AGID00330	1874	2317	Old	S6	-1.2061
+AGID00062	600	2211	Old	S6_pS235S236	0.097658
+AGID00063	601	2215	Old	S6_pS240S244	-0.096129
+AGID00157	1127	sc-58420	Old	SCD1	-0.28647
+AGID00230	1339	11998	Set163	SDHA	0.303446323070264
+AGID00294	1039	ab69836	Old	SETD2	0.32454
+AGID00161	1131	32-4500	Old	SF2	0.057114
+AGID02179	2495	3534	Set163	SFRP1	0.390740294136845
+AGID00431	2411	12103	Set163	SGK1	0.611005587571919
+AGID00430	2409	8156	Set163	SGK3	0.128501283950771
+AGID02168	2476	bs-3413R	Old	SHC_pY317	0.21439
+AGID00376	2241	3397	Set163	SHP2	0.393336072081686
+AGID00183	1180	3751	Old	SHP2_pY542	0.10064
+AGID02208	2570	ab8120	Set163	SIRP-alpha	-0.337249338218035
+AGID00222	1133	sc-99002	Old	SLC1A5	-1.6393
+AGID00255	1411	sc-136891	Set163	Slfn11	0.697266235872351
+AGID00064	610	2954	Old	SMAC	-0.5734
+AGID00113	922	1649-1/ab33902	Old	SMAD1	-0.057653
+AGID00091	796	1735-1/ab40854	Old	SMAD3	-0.11362
+AGID02160	2467	46535	Old	SMAD4	0.22591
+AGID00065	616	3895	Old	SNAIL	0.27863
+AGID00325	1818	4266	Set163	SOD1	0.193914839181295
+AGID00380	1328	13141	Set163	SOD2	0.306991098360625
+AGID00298	1670	2748	Set163	Sox2	0.117156117829395
+AGID00066	621	05-184	Old	SRC	-0.13522
+AGID02157	2463	6943	Old	SRC_pY416	0.16917
+AGID00068	626	2105	Old	SRC_pY527	0.64112
+AGID00185	1197	4904	Set163	Stat3	-0.782376839965941
+AGID00388	637	9131	Old	STAT3_pY705	0.057721
+AGID00069	638	1289-1/ab32043	Old	STAT5ALPHA	0.018777
+AGID00077	718	1972-1/ab52630	Old	STATHMIN	0.55732
+AGID00357	2099	13647	Set163	STING	-0.211058669469739
+AGID00128	1033	sc-1240	Old	SYK	-1.1364
+AGID00070	646	05-348	Set163	Tau	-0.372198697750144
+AGID00327	777	2149	Old	TAZ	0.41181
+AGID00228	1333	7495	Set163	TFAM	0
+AGID00165	1140	22500002	Old	TFRC	-2.051
+AGID00149	1107	S1711/ab137573	Old	TIGAR	0.19055
+AGID00109	908	MS-224-P1	Old	TRANSGLUTAMINASE	-0.86559
+AGID00406	2370	612344	Set163	TRAP1	-1.20891367589001
+AGID00559	2537	PA5-34561	Set163	TRIM24	-0.362050922196903
+AGID00306	1756	ab167154	Set163	TRIM25	-0.970039387258183
+AGID00426	2400	PA5-52193	Set163	TRIP13	0.221201330842177
+AGID00155	1125	4906	Old	TSC1	-0.44388
+AGID00144	1081	2044-1/ab76013	Old	TTF1	NA
+AGID00071	670	1613-1/ab32554	Old	TUBERIN	-0.44318
+AGID02194	2511	ab109403	Old	TUBERIN_pT1462	0.40448
+AGID00417	1842	ab173300	Set163	TUFM	-0.235893700843313
+AGID00238	1353	sc-81417	Set163	Twist	0.153676325080391
+AGID00436	1080	5585	Set163	Tyro3	0.392265785534695
+AGID00295	1662	5546	Set163	U-Histone-H2B	0.311141151732953
+AGID00214	1270	HPA005651	Set163	UBAC1	-0.142188810559843
+AGID00351	2020	sc-136145	Set163	UBQLN4	0.279946313851407
+AGID00213	1267	sc-271268	Set163	UGT1A	-0.0775286727968457
+AGID00284	1626	6888	Set163	ULK1_pS757	-0.0710415832852368
+AGID00208	1256	MS304/ab14745	Set163	UQCRC2	0.0916463012361285
+AGID00313	1781	13115	Set163	UVRAG	0.155236320782879
+AGID00073	678	3112	Set163	VASP	-0.275044039861567
+AGID00184	1181	2502	Set163	VAV1	0.00771043304347793
+AGID00074	688	2479	Old	VEGFR2	-0.00338
+AGID00421	2394	68547	Set163	VHL	-0.0582136749196086
+AGID00231	1343	SAB4200080	Set163	Vinculin	-0.0126540917782819
+AGID00317	1802	4936	Set163	Wee1	-0.477939880536154
+AGID00354	2058	4910	Set163	Wee1_pS642	0.352016078042751
+AGID00285	1627	12124	Set163	WIPI1	-0.0693036948129328
+AGID00286	1628	8567	Set163	WIPI2	-0.153368668603305
+AGID02214	2576	ab195380	Set163	WTAP	-0.847204382276189
+AGID00133	1044	sc-32136	Old	XBP1	0.35967
+AGID00076	699	2042	Set163	XIAP	0.277735794199032
+AGID00241	1359	sc-56813	Set163	XPA	1.36859133014903
+AGID00349	1354	ab3299	Set163	XPF	0.441963700896079
+AGID02137	2440	PA5-29359	Old	XRCC1	-0.16794
+AGID00088	780	sc-15407	Old	YAP	0.083676
+AGID00089	782	4911	Old	YAP_pS127	-0.39363
+AGID00504	700	17250002	Old	YB1	-0.43063
+AGID00095	835	2900	Old	YB1_pS102	-0.13951
+AGID02217	2579	ab220163	Set163	YTHDF2	-0.810048699794928
+AGID02210	2572	ab220161	Set163	YTHDF3	-1.17277371997418
+AGID00326	1828	2705	Set163	ZAP-70	0.886839165312839
+AGID00432	2244	sc-25388	Set163	ZEB1	0.614084600184325

data/gdc_data_organized/8f34cb4c-5798-47a0-89a1-f0ee26a8ae93/TCGA-BRCA.8536ff4e-4027-4673-96b9-43f4f61a5376.ascat3.allelic_specific.seg.txt

@@ -0,0 +1,46 @@
+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr1	61735	121741181	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr1	143285278	248930189	6	3	3
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr2	12784	242147305	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr3	18667	198169247	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr4	12281	190106768	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr5	15532	181363319	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr6	149661	170741917	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr7	43259	158686024	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr7	158687768	159334314	4	4	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr8	81254	33616194	2	2	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr8	33617556	34078180	14	12	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr8	34078201	34522465	8	6	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr8	34523101	37085372	15	13	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr8	37087264	39571490	19	18	1
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr8	39571552	145072769	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr9	46587	92862608	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr9	92863673	111456480	2	2	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr9	111456667	138200944	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr10	26823	133769379	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	198572	47971952	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	47972110	58097238	3	3	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	58102916	66297379	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	66298531	68185662	14	12	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	68186117	68748153	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	68755235	70405706	11	9	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	70409269	71816650	14	13	1
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	71816665	72019260	12	11	1
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	72019669	72019669	18	18	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr11	72028377	135074876	2	2	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr12	51460	133201603	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr13	18452809	114342922	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr14	18225647	106877229	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr15	19811075	39953553	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr15	39953578	42044398	2	2	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr15	42046039	101928837	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr16	10777	301688	4	4	0
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr16	301743	36048855	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr16	46429870	90221127	2	1	1
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr17	150733	83090856	2	1	1
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr18	48133	80257174	2	1	1
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr19	90910	58586487	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr20	80664	64324800	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr21	10336543	46677045	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chr22	15294545	50796027	4	2	2
+8536ff4e-4027-4673-96b9-43f4f61a5376	chrX	251810	156004181	4	2	2

data/gdc_data_organized/8f34cb4c-5798-47a0-89a1-f0ee26a8ae93/b24d3740-10de-4bdd-b5b7-0f0cf541537e.wgs.ASCAT.copy_number_variation.seg.txt

@@ -0,0 +1,103 @@
+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr1	13116	894801	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr1	896109	121742438	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr1	143417573	248417082	3	2	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr1	248418710	248945703	3	3	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr2	10587	86939086	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr2	86941561	87882338	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr2	87886388	97207656	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr2	97208778	97248427	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr2	97250158	242183243	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr3	18519	198181744	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr4	11961	49501990	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr4	49503841	51922391	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr4	51926613	190122722	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr5	11882	167808	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr5	168810	181363900	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr6	100116	170740469	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr7	20608	151970978	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr7	151972013	152352977	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr7	152354105	159334386	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	61774	33608032	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	33609206	34082749	7	6	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	34083912	34518417	4	3	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	34519761	35768999	7	6	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	35770315	36288410	10	9	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	36289618	36741321	8	7	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	36743997	37042339	5	4	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	37043369	37349991	9	8	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	37351106	37846520	13	12	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	37848043	39330318	10	9	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	39331962	39557036	7	6	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr8	39558464	145078402	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	10469	200621	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	202004	38920248	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	38921696	62880514	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	62881835	63743308	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	63746808	68393192	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	68394647	92931071	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	92932217	111410593	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr9	111411868	138256233	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr10	15029	91302094	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr10	91303691	91833770	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr10	91835084	133787009	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	87268	54537411	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	54538530	58082848	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	58085221	60481528	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	60482585	60677192	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	60679242	66288671	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	66290611	66359713	6	5	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	66361320	67881227	8	7	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	67882684	68197351	6	5	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	68198811	68745778	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	68746797	69853845	6	5	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	69854873	70359940	5	4	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	70361667	70575194	7	6	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	70576372	71307836	9	8	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	71308893	72022473	7	6	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	72024647	111552561	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	111553991	111597169	3	2	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr11	111598238	135076424	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr12	11065	77861	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr12	79031	133264676	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr13	18445955	18537481	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr13	18540903	114343123	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	18223583	18395334	3	3	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	18397177	18661132	3	2	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	18662553	19952105	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	19953209	105578245	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	105579903	105615435	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	105616460	105633883	3	2	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	105635175	105714390	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr14	105715688	106880670	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	19795285	20057775	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	20060204	22240756	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	22242799	24244901	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	24245912	24476671	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	24477845	39945826	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	39947096	42042142	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr15	42043159	101980591	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	10291	14687948	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	14766792	15025034	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	15026245	16145682	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	16147395	16747675	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	16748758	18100477	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	18102132	18951894	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	18953285	36045725	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr16	46380940	90226358	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr17	151035	83237603	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr18	16444	23951195	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr18	23952495	24018301	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr18	24020655	80259190	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr19	157892	24437859	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr19	27240947	27461550	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr19	27462623	58607412	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr20	80457	64331516	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr21	7762688	9053058	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr21	9061827	13162672	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr21	13164843	46699722	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr22	15284540	16405142	1	1	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chr22	16406147	50802392	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chrX	2781514	92631906	2	1	1
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chrX	92633689	92850275	2	2	0
+1574b2ee-b678-4828-a7f6-16855d9e41fd	chrX	92853730	155699751	2	1	1

data/gdc_data_organized/8f34cb4c-5798-47a0-89a1-f0ee26a8ae93/b9fd2038-4b38-45bd-8ef8-4cd82206ea87.wxs.aliquot_ensemble_masked.maf.gz

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data/gdc_data_organized/8f912a40-3251-4e1f-ae65-1f93d71f9881/90982fbe-3a05-42d0-bf79-00ef4d020483.wxs.aliquot_ensemble_masked.maf.gz

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data/gdc_data_organized/8f912a40-3251-4e1f-ae65-1f93d71f9881/TCGA-EW-A1OZ-01A-01-TSA.5b179149-f5d2-4b79-8988-5c2fc2268cdc.svs

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data/gdc_data_organized/8f912a40-3251-4e1f-ae65-1f93d71f9881/TCGA-EW-A1OZ-01A-21-A17J-20_RPPA_data.tsv

@@ -0,0 +1,488 @@
+AGID	lab_id	catalog_number	set_id	peptide_target	protein_expression
+AGID00100	882	sc-628	Old	1433BETA	-0.098472
+AGID00111	913	sc-23957	Old	1433EPSILON	-0.034694
+AGID00101	883	sc-1019	Old	1433ZETA	-0.27924
+AGID00001	2	9452	Old	4EBP1	-0.015816
+AGID00002	3	9456	Old	4EBP1_pS65	0.42249
+AGID00003	6	9459	Old	4EBP1_pT37T46	0.68163
+AGID00443	8	9455	Old	4EBP1_pT70	0.058747
+AGID00120	985	4937	Old	53BP1	-0.30134
+AGID00004	13	3661	Old	ACC_pS79	0.094699
+AGID00005	14	1768-1/ab45174	Old	ACC1	0.20427
+AGID00408	2372	3658	Set163	AceCS1	-0.009485287
+AGID00473	1182	5335	Old	ACETYLATUBULINLYS40	-0.5518
+AGID00404	2367	9189	Set163	ACSL1	-0.1247948
+AGID02144	2450	PA5-27081	Old	ACVRL1	-0.084875
+AGID00186	1198	ab88574	Old	ADAR1	-0.16033
+AGID00146	1084	4691	Old	AKT	0.38703
+AGID00028	230	9271	Old	AKT_pS473	-0.35795
+AGID00170	1154	2965	Old	AKT_pT308	-0.50941
+AGID00316	1800	3063	Set163	Akt2	-0.7244898
+AGID00347	2009	8599	Set163	Akt2_pS474	-0.1485353
+AGID02215	2577	ab195377	Set163	ALKBH5	0.21438
+AGID00498	924	CA1030	Old	ALPHACATENIN	NA
+AGID00287	1630	ABC80	Set163	Ambra1_pS52	-0.06709062
+AGID00236	1351	ab129081	Set163	AMPK-a2_pS345	-0.1338599
+AGID00006	39	2532	Old	AMPKALPHA	0.21965
+AGID00007	40	2535	Old	AMPKALPHA_pT172	-0.1486
+AGID00193	1208	610066	Old	ANNEXIN1	0.089347
+AGID00166	1142	610668	Old	ANNEXINVII	0.11777
+AGID00371	756	1852-1/ab52615	Old	AR	2.4388
+AGID00194	1217	4432	Old	ARAF	0.002352
+AGID02191	2507	PA5-39728	Old	ARAF_pS299	0.34061
+AGID00260	1053	sc-32761	Old	ARID1A	-0.13589
+AGID00264	1560	HPA029318	Old	ASNS	-0.34358
+AGID00276	1612	3415	Set163	Atg3	-0.3385648
+AGID00309	1775	13507	Set163	Atg4B	-0.1954953
+AGID00310	1776	12994	Set163	Atg5	-0.1203949
+AGID00277	1613	8558	Set163	Atg7	0.04355522
+AGID00242	1363	2873	Old	ATM	0.18471
+AGID02142	2447	13050	Set163	ATM_pS1981	-0.01210992
+AGID00217	1289	ab14748	Set163	ATP5A	-0.8238454
+AGID02145	2451	PA5-43776	Set163	ATP5H	0.7565702
+AGID02150	2456	13934	Set163	ATR	1.333792
+AGID00315	1795	ab178407	Set163	ATR_pS428	-0.123771
+AGID00268	1569	ab97508	Set163	ATRX	-0.1441174
+AGID00391	2332	14475	Set163	Aurora-A	0.3746952
+AGID00392	2333	2914	Set163	Aurora-ABC_pT288_pT232_pT198	0.4543752
+AGID02195	2512	MA5-27890	Set163	Aurora-B	-0.2053311
+AGID00215	1271	8661	Old	AXL	0.62571
+AGID02143	2449	8457	Set163	b-Actin	0.712765
+AGID00179	1170	9565	Set163	b-Catenin_pT41_S45	0.6027102
+AGID00301	1725	14058	Set163	B7-H3	-0.4435857
+AGID00302	1726	14572	Set163	B7-H4	-0.1759301
+AGID00008	63	9291	Old	BAD_pS112	0.23172
+AGID00009	71	1542-1/ab32371	Old	BAK	0.42944
+AGID00192	1207	sc-28383	Old	BAP1C4	-0.47948
+AGID00010	73	2772	Old	BAX	-0.22174
+AGID00433	80	M0887	Old	BCL2	-0.61493
+AGID00219	1299	PAB8528	Old	BCL2A1	0.19146
+AGID00012	84	1018-1	Old	BCLXL	-0.26035
+AGID00377	87	sc-10086	Old	BECLIN	0.13719
+AGID00011	75	9562	Old	BETACATENIN	-0.20657
+AGID00013	88	1008-1/ab32060	Old	BID	0.22299
+AGID00180	90	1036-1/ab32158	Old	BIM	-0.83223
+AGID00221	1311	610978	Set163	BiP-GRP78	-0.4010403
+AGID00373	2194	07-507	Set163	BMK1-Erk5_pT218_Y220	-0.2688447
+AGID00355	92	1647/ab33899	Old	BRAF	-0.13533
+AGID00014	94	2696	Old	BRAF_pS445	-0.20441
+AGID00445	761	9012	Old	BRCA2	-0.11383
+AGID00266	1567	13440	Old	BRD4	-0.36821
+AGID00168	1146	2865	Set163	c-Abl_pY412	0.7154445
+AGID00278	1615	3130	Set163	c-IAP2	-0.1729099
+AGID00345	1990	5649	Old	CA9	NA
+AGID00265	1565	2862	Old	CABL	-0.040345
+AGID00429	2407	2679	Set163	Calnexin	-0.294835
+AGID00176	1165	9496	Set163	Caspase-8-cleaved	0.5638101
+AGID00623	111	9665	Old	CASPASE3	-0.35981
+AGID00015	109	9491	Old	CASPASE7CLEAVEDD198	-0.89127
+AGID00118	951	9746	Old	CASPASE8	-0.028108
+AGID00537	935	551246	Old	CASPASE9	NA
+AGID00016	114	3238	Old	CAVEOLIN1	0.37331
+AGID00358	2100	ab76000	Set163	CD134	0.5229038
+AGID00303	1737	826701	Set163	CD171	-0.8880848
+AGID00410	125	1632-1/ab78237	Old	CD20	0.12298
+AGID00220	1308	ab28340	Old	CD26	0.12087
+AGID00191	1206	610467	Set163	CD29	-0.3175651
+AGID00017	127	M0823	Old	CD31	-0.053451
+AGID00369	2174	ab108403	Set163	CD38	0.2602052
+AGID00359	2104	ab133616	Set163	CD4	0.231184
+AGID00411	1398	3570	Set163	CD44	0.1751101
+AGID00237	1352	M070101-2	Set163	CD45	-0.5004149
+AGID00115	937	611016	Old	CD49B	-0.2023
+AGID02171	2482	91882	Set163	CD86	0.3925052
+AGID00329	1873	4688	Set163	cdc25C	-0.5478198
+AGID00227	1332	4651	Set163	Cdc42	-0.172545
+AGID00422	2396	3387	Set163	Cdc6	0.5108951
+AGID00501	1007	9112	Old	CDK1	0.040241
+AGID00293	1658	ab32384	Set163	CDK1_pT14	-0.06051477
+AGID00314	1783	4539	Old	CDK1_pY15	-0.29873
+AGID00423	2397	8064	Set163	CDT1	0.5671198
+AGID02101	2348	15102	Set163	cGAS	-0.4039748
+AGID00447	2410	13460	Set163	CHD1L	-0.4058166
+AGID00189	1203	2360	Old	CHK1	0.13258
+AGID00234	1348	ab79758	Old	CHK1_pS296	0.11125
+AGID00107	903	2348	Old	CHK1_pS345	-0.10877
+AGID00018	146	3440	Old	CHK2	-0.16285
+AGID00019	147	2197	Old	CHK2_pT68	0.10582
+AGID00527	2078	4952	Old	CIAP	-0.010072
+AGID00350	2018	3793	Set163	CIITA	0.2833252
+AGID00434	155	9164	Old	CJUN_pS73	0.24187
+AGID00020	157	1522-1/ab32363	Old	CKIT	0.022574
+AGID00400	852	NB100-91714	Old	CLAUDIN7	-0.16598
+AGID00466	726	3127	Old	CMET	0.20629
+AGID00079	727	3129	Old	CMET_pY1235	0.0767
+AGID00167	161	9402	Old	CMYC	0.73304
+AGID00292	1656	11130-1-AP	Old	COG3	-0.069384
+AGID00021	171	sc-20649	Old	COLLAGENVI	0.15669
+AGID00141	1069	459230	Old	COMPLEXIISUBUNIT30	NA
+AGID00267	1568	3512	Set163	Connexin-43	2.089485
+AGID00269	1571	6434	Set163	Coup-TFII	-0.2383648
+AGID00150	1116	4850	Set163	Cox-IV	-0.4119554
+AGID00195	1218	4842	Set163	Cox2	0.5580552
+AGID00188	803	05-739	Old	CRAF	0.22566
+AGID00022	179	9427	Old	CRAF_pS338	0.00054535
+AGID00023	181	9197	Set163	Creb	0.5414141
+AGID00393	2334	9198	Set163	CREB_pS133	0.3396174
+AGID00365	2155	4980	Set163	CSK	-0.05253481
+AGID00367	2160	9201	Set163	CtIP	0.3488999
+AGID00536	2096	ab107198	Old	CTLA4	NA
+AGID00025	198	2936	Set163	Cyclin-D3	-0.3135049
+AGID00024	192	1495-1/ab32053	Old	CYCLINB1	-0.56414
+AGID00382	194	sc-718	Old	CYCLIND1	0.47154
+AGID00437	199	sc-25303	Old	CYCLINE1	-1.1091
+AGID00449	202	1142-1	Old	CYCLINE2	-0.10872
+AGID00209	1257	ab110324	Set163	Cyclophilin-F	0.6535449
+AGID00247	1379	ab48389	Set163	D-a-Tubulin	0.09809022
+AGID00308	1770	GTX10524	Set163	DAPK1_pS308	-0.1701448
+AGID00304	1744	ab51601	Set163	DAPK2	-0.11888
+AGID00343	1980	6998	Set163	DDB-1	-0.5591048
+AGID00427	2402	5583	Set163	DDR1	0.4574895
+AGID00428	2403	SAB4504671	Set163	DDR1_pY513	0.6479852
+AGID00532	1273	Bast Lab	Old	DIRAS3	0.061686
+AGID00104	891	ab76008	Old	DJ1	-0.34555
+AGID02146	2452	4658	Set163	DM-Histone-H3	0.6912698
+AGID00386	1397	ab32521	Set163	DM-K9-Histone-H3	-0.2750698
+AGID00352	2030	14649	Set163	DNA-Ligase-IV	1.03896
+AGID00407	2371	13609	Set163	DNA_POLG	0.6312151
+AGID00399	2344	5032	Set163	DNMT1	0.2611351
+AGID00409	2373	5391	Set163	DRP1	-0.2029763
+AGID00253	1406	5149	Old	DUSP4	-0.052967
+AGID00334	1936	ab76310	Set163	DUSP6	0.8506049
+AGID00116	940	3218	Old	DVL3	0.70969
+AGID00211	1261	sc-251	Old	E2F1	NA
+AGID00148	1099	3195	Old	ECADHERIN	-1.0501
+AGID00135	1060	2332	Old	EEF2	-0.54186
+AGID00136	1061	3692	Old	EEF2K	-0.16325
+AGID00152	1120	2232	Old	EGFR	-0.33507
+AGID00450	217	2234	Old	EGFR_pY1068	1.7381
+AGID00026	221	1124-1/ab32578	Old	EGFR_pY1173	0.044518
+AGID00078	722	9742	Old	EIF4E	-0.12557
+AGID00328	1871	ab76256	Set163	eIF4E_pS209	0.5552049
+AGID00154	1124	2498	Old	EIF4G	0.14644
+AGID00027	228	9181	Set163	Elk1_pS383	0.6676102
+AGID00235	1350	M061329-2	Set163	EMA	-0.8606152
+AGID00394	2337	3810	Set163	Enolase-1	0.41339
+AGID00395	2338	8171	Set163	Enolase-2	0.7503702
+AGID00196	1219	GTX629542	Old	ENY2	-0.16639
+AGID00438	1849	A302-024A	Set163	EphA2	0.7422852
+AGID00552	2422	6347	Set163	EphA2_pS897	0.3243052
+AGID00553	2423	12677	Set163	EphA2_pY588	0.2285367
+AGID00075	693	556347	Old	EPPK1	2.6741
+AGID00335	238	RM-9101	Old	ERALPHA	1.1349
+AGID00029	241	1091-1/ab32396	Old	ERALPHA_pS118	0.13115
+AGID00240	247	MS-671	Old	ERCC1	-0.01661
+AGID00239	1355	11331-1-AP	Old	ERCC5	-0.31973
+AGID00484	249	sc-154	Old	ERK2	-0.20513
+AGID00372	2193	3552	Set163	Erk5	0.3740552
+AGID00405	2369	13826	Set163	ERRalpha	0.3553901
+AGID00187	1200	A303-501A	Old	ETS1	0.055998
+AGID00511	2492	2593	Set163	EVI1	0.7105196
+AGID00485	1284	4905	Old	EZH2	NA
+AGID00030	252	1700-1/ab40794	Set163	FAK	-0.2256048
+AGID02151	2457	8556	Set163	FAK_pY397	0.4047986
+AGID00171	1156	3180	Old	FASN	3.773
+AGID00356	2085	500-P18/10775-082	Set163	FGF-basic	0.1058402
+AGID00031	262	1574-1/ab45688	Old	FIBRONECTIN	2.1358
+AGID00339	1959	4403	Set163	FN14	-0.2736898
+AGID02152	2458	20459	Old	FOXM1	-0.44481
+AGID00378	269	9467	Old	FOXO3A	0.028528
+AGID02197	2515	orb6051	Old	FOXO3A_pS318S321	0.17687
+AGID02167	2475	PA5-64616	Set163	FRS2-alpha_pY196	0.6237952
+AGID02213	2575	ab124892	Set163	FTO	-0.3943248
+AGID02141	2446	12263	Old	G6PD	-0.11098
+AGID00117	943	3239	Old	GAB2	-0.051546
+AGID00412	274	AM4300	Old	GAPDH	-0.52496
+AGID00086	764	558686	Old	GATA3	2.0178
+AGID00383	1578	4253	Old	GATA6	0.33687
+AGID00289	1634	12601-1-AP	Set163	GCLC	-0.4307598
+AGID00305	1745	ab124827	Set163	GCLM	0.006245224
+AGID00212	1263	3305	Old	GCN5L2	-0.64133
+AGID00270	1579	3538	Set163	Gli1	-0.1555352
+AGID00263	1520	ab69838	Set163	Gli3	0.3532541
+AGID00548	2530	3660	Set163	Glucocorticoid-Receptor	-0.07035978
+AGID00387	1617	12793	Set163	Glutamate-D1-2	0.5326941
+AGID00262	1491	ab156876	Set163	Glutaminase	-0.06335484
+AGID00319	1807	4275	Set163	Granzyme-B	-0.08219987
+AGID00368	2169	ab183737	Set163	GRB7	1.005434
+AGID00396	2339	3593	Set163	Grp75	-0.02601984
+AGID00174	1163	9315	Set163	GSK-3B	0.4660144
+AGID00502	1082	9336	Old	GSK3_pS9	0.28991
+AGID00033	284	sc-7291	Old	GSK3ALPHABETA	-0.31985
+AGID00034	285	9331	Old	GSK3ALPHABETA_pS21S9	0.1231
+AGID00129	1035	3886	Old	GYS	NA
+AGID00130	1036	3891	Old	GYS_pS641	NA
+AGID01354	1342	9718	Set163	H2AX_pS139	-0.1111648
+AGID00363	1409	MA1-2022	Set163	H2AX_pS140	-0.2146798
+AGID00131	1038	MS-325-P1	Old	HER2	3.1492
+AGID00142	299	06-229	Old	HER2_pY1248	2.8535
+AGID00110	911	sc-285	Old	HER3	0.21659
+AGID00080	728	4791	Old	HER3_pY1289	0.068704
+AGID00103	890	2573	Old	HEREGULIN	0.080553
+AGID00271	1582	11988	Set163	HES1	-0.504025
+AGID00397	2340	2024	Set163	Hexokinase-I	0.641595
+AGID00442	1023	2867	Set163	Hexokinase-II	0.9002137
+AGID00419	1402	610958	Old	HIF1ALPHA	NA
+AGID00205	1250	ab1791	Set163	Histone-H3	-0.2967049
+AGID00398	2341	3377	Set163	Histone-H3_pS10	0.4845501
+AGID00332	1901	ab128959	Set163	HLA-DQA1	-0.7627861
+AGID00333	1902	14832-1-AP	Set163	HMHA1	0.2110847
+AGID00035	321	2402	Set163	HSP27	-0.09302983
+AGID00036	323	2401	Set163	HSP27_pS82	0.6855152
+AGID00320	1808	12165	Set163	HSP60	0.12936
+AGID00037	325	4872	Old	HSP70	1.0014
+AGID00366	2158	86630	Set163	IDO	-0.05173027
+AGID00197	1221	3024	Old	IGF1R_pY1135Y1136	0.088313
+AGID00038	335	3922	Old	IGFBP2	-0.25107
+AGID00090	793	611504	Set163	IGFBP3	-0.1609851
+AGID00039	336	3027	Set163	IGFRb	0.08187523
+AGID00336	1949	12153	Set163	IL-6	0.0911299
+AGID02221	2583	57145	Set163	IMP3	-0.3972749
+AGID02153	2459	14543	Old	INPP4B	2.346
+AGID00272	1586	3025	Set163	IR-b	-0.3695348
+AGID00519	2519	4302	Set163	IRF-3	-0.3729295
+AGID00520	2520	4947	Set163	IRF-3_pS396	-0.2386153
+AGID00223	1316	sc-497	Old	IRF1	0.023309
+AGID00092	802	06-248	Old	IRS1	0.44156
+AGID00040	371	4502	Set163	IRS2	0.2597548
+AGID00250	1394	sc-13157	Old	JAB1	-0.25319
+AGID00256	1413	ab109536	Set163	Jagged1	-0.06926925
+AGID00177	1166	3230	Old	JAK2	-0.53706
+AGID00758	377	4671	Old	JNK_pT183Y185	0.50571
+AGID02136	2439	PA5-28262	Old	JNK2	-0.089591
+AGID00307	1757	ab10484	Set163	KAP1	-0.3439403
+AGID00528	904	2180	Old	KU80	0.016777
+AGID00375	2237	HPA028732	Set163	LAD1	0.8880602
+AGID00290	1643	IHC-00439	Set163	Lasu1	-0.1810998
+AGID00279	1618	4108	Set163	LC3A-B	-0.16549
+AGID00042	397	2752	Old	LCK	-0.47981
+AGID00119	976	3582	Old	LDHA	NA
+AGID00533	977	ab85319	Old	LDHB	NA
+AGID00529	1477	3050	Old	LKB1	-0.039521
+AGID00244	1367	2568	Set163	LRP6_pS1490	-0.09991979
+AGID00439	2424	2796	Set163	Lyn	0.2154002
+AGID02154	2460	4370	Old	MAPK_pT202Y204	1.5601
+AGID00198	1222	5453	Set163	Mcl-1	-0.2196258
+AGID00288	1633	AB3314P	Set163	MCT4	0.7511251
+AGID00175	1164	3521	Set163	MDM2_pS166	0.3717402
+AGID00044	417	1235-1/ab32576	Old	MEK1	0.19285
+AGID00143	1076	9154	Old	MEK1_pS217S221	0.5211
+AGID00201	1243	9125	Set163	MEK2	-0.06429525
+AGID00361	2118	ab51061	Set163	MelanA	0.3285602
+AGID00362	2119	ab137078	Set163	Melanoma-gp100	0.6475651
+AGID00337	1951	12711	Set163	MERIT40	-0.3953004
+AGID00338	1952	12110	Set163	MERIT40_pS29	-0.4454048
+AGID02212	2574	ab195352	Set163	METTL3	-0.4747748
+AGID00225	1323	sc-20121	Set163	MIF	0.5478652
+AGID00137	1062	WH0054206M1	Old	MIG6	-0.13514
+AGID00403	2117	ab20663	Set163	MITF	0.2685198
+AGID00503	1067	ab3298	Old	MITOCHONDRIA	NA
+AGID00321	1809	14739	Set163	Mitofusin-1	0.5619964
+AGID00322	1810	11925	Set163	Mitofusin-2	0.2798851
+AGID00389	2324	3515	Set163	MLH1	-0.3962749
+AGID00312	1780	14993	Set163	MLKL	-0.3501549
+AGID00402	2359	MAB3328	Set163	MMP14	1.326035
+AGID00045	435	4022	Set163	MMP2	0.6669024
+AGID00122	1005	2195	Set163	Mnk1	0.05013401
+AGID00331	1899	sc-377312	Set163	MR1	-0.27027
+AGID00273	1589	ab103319	Set163	MRAP	-0.02062477
+AGID00530	440	4847	Old	MRE11	0.35771
+AGID00390	905	2850	Old	MSH2	-0.63904
+AGID00138	1063	22030002	Old	MSH6	-0.42819
+AGID00299	1675	ab76148	Set163	MSI2	-0.07795977
+AGID00232	1344	ab14705	Set163	MTCO1	-0.7412465
+AGID00046	444	2983	Old	MTOR	0.14369
+AGID00047	446	2971	Old	MTOR_pS2448	0.11398
+AGID00204	1247	H00009788-M01A	Set163	MTSS1	-0.1013599
+AGID00401	1139	21370002	Old	MYH11	1.026
+AGID00291	1647	3403	Old	MYOSINIIA	0.57799
+AGID00173	1160	5026	Old	MYOSINIIA_pS1943	0.84852
+AGID00318	1803	4282	Set163	Myt1	-0.396465
+AGID00216	1274	5795-1/ab129189	Old	NAPSINA	NA
+AGID00418	452	4061	Old	NCADHERIN	-0.0077525
+AGID00156	1126	3217	Old	NDRG1_pT346	-0.32611
+AGID02133	2436	PA5-45913	Set163	NDUFB4	0.7858252
+AGID00134	1046	22710002	Old	NF2	-0.22423
+AGID00048	457	3033	Old	NFKBP65_pS536	0.90064
+AGID02155	2461	3608	Old	NOTCH1	0.017897
+AGID00340	1969	4147	Set163	Notch1-cleaved	-0.1005
+AGID00087	767	sc-5593	Set163	Notch3	-0.0319448
+AGID00258	1420	3187	Set163	NQO1	-0.90596
+AGID00162	1136	sc-31	Old	NRAS	-0.097844
+AGID00257	1419	12721	Old	NRF2	NA
+AGID00297	1669	2750	Set163	Oct-4	0.06739022
+AGID00420	466	1712-1/ab40803	Old	P16INK4A	0.017794
+AGID00384	470	sc-6246	Old	P21	0.76533
+AGID00105	897	1591-1/ab32034	Old	P27	-0.46874
+AGID00096	842	AF1555	Old	P27_pT157	0.16204
+AGID00099	878	ab64949	Old	P27_pT198	-0.14754
+AGID00181	1175	9228	Set163	p38-a	-0.3481259
+AGID00098	479	9211	Old	P38_pT180Y182	0.16468
+AGID00049	478	9212	Old	P38MAPK	-0.16262
+AGID00151	1119	4695	Set163	p44-42-MAPK	0.3302402
+AGID00050	481	9282	Old	P53	-0.10898
+AGID00490	1187	610833	Old	P62LCKLIGAND	-0.37883
+AGID00545	1415	ab53039	Old	P63	NA
+AGID00052	494	9205	Old	P70S6K_pT389	0.34405
+AGID00051	493	1494-1/ab32529	Old	P70S6K1	0.40558
+AGID00085	759	9347	Old	P90RSK	-0.41265
+AGID00531	770	9344	Old	P90RSK_pT359S363	0.055996
+AGID00182	1178	9346	Set163	p90RSK_pT573	0.4392551
+AGID00053	499	612024	Old	PAI1	0.58213
+AGID00224	1322	HPA035895	Set163	PAICS	-0.05025477
+AGID00323	1811	2602	Set163	PAK1	-0.4115752
+AGID02199	2517	PA5-69540	Set163	PAK4	-0.1006999
+AGID00245	1370	4336-BPC-100	Set163	PAR	0.09653477
+AGID00374	2209	66564	Set163	PARG	0.417375
+AGID00370	1372	sc-7150	Old	PARP1	NA
+AGID00468	501	9546	Old	PARPCLEAVED	-0.15236
+AGID00274	1591	ab53715	Set163	Patched	-0.08090481
+AGID00513	2486	60433	Set163	PAX6	0.5129051
+AGID00441	1621	9857	Set163	PAX8	0.4894488
+AGID00054	504	2542	Old	PAXILLIN	0.52091
+AGID00055	509	2130	Old	PCADHERIN	-0.34059
+AGID00248	511	ab29	Old	PCNA	-0.52172
+AGID00413	2095	43248	Old	PDCD1	NA
+AGID00094	816	600-401-965	Old	PDCD4	-0.39574
+AGID00385	1225	3169	Set163	PDGFRB	1.31399
+AGID00210	1258	ab110332	Set163	PDH	-0.05960093
+AGID00324	1817	3205	Set163	PDHA1	0.4595796
+AGID00280	1622	3820	Set163	PDHK1	-0.02703478
+AGID00056	515	3062	Old	PDK1	-0.068341
+AGID00057	516	3061	Old	PDK1_pS241	0.25108
+AGID00300	1234	sc-19090	Old	PDL1	-0.1363
+AGID00124	1017	2780	Old	PEA15	-0.093701
+AGID00125	1018	44-836G	Old	PEA15_pS116	0.080486
+AGID00440	2429	3192	Set163	PERK	0.1729246
+AGID02207	2569	ab192876	Set163	PGM1	-0.2140754
+AGID00281	1623	13428	Set163	PHGDH	-0.3264254
+AGID00425	2399	22789-1-AP	Set163	PHLPP	0.3775452
+AGID00226	1330	sc-376412	Set163	PI3K-p110-b	-0.05495478
+AGID00093	808	4255	Old	PI3KP110ALPHA	-0.19562
+AGID00058	523	06-195	Old	PI3KP85	-0.4171
+AGID00296	1667	5675	Set163	PKA-a	-0.6381699
+AGID00259	1426	9375	Set163	PKC-a-b-II_pT638_T641	-0.4728448
+AGID00172	529	05-154	Old	PKCALPHA	-0.59366
+AGID00460	530	06-822	Old	PKCALPHA_pS657	-0.31167
+AGID00114	932	07-875	Old	PKCDELTA_pS664	0.04901
+AGID00163	1137	9371	Old	PKCPANBETAII_pS660	0.15964
+AGID00126	1025	4053	Old	PKM2	NA
+AGID00512	2489	5690	Set163	PLC-gamma1	0.4576444
+AGID02138	2441	GTX133463	Set163	PLC-gamma2_pY759	0.5492501
+AGID00084	754	4513	Set163	PLK1	0.1839552
+AGID00203	1246	22510002	Set163	PMS2	0.5705852
+AGID00207	1254	ab14734	Set163	Porin	0.1911652
+AGID00381	549	1483-1/ab32085	Old	PR	-0.25053
+AGID00081	738	AHO1031	Set163	PRAS40	-0.1051248
+AGID00082	739	44-1100G	Old	PRAS40_pT246	0.10542
+AGID00424	2398	OAAF05458	Set163	PRC1_pT481	0.6077752
+AGID00492	1205	HPA007730	Old	PRDX1	-0.31216
+AGID00190	1204	ab102739	Old	PREX1	0.3605
+AGID00061	566	9552	Old	PTEN	0.16352
+AGID00364	2154	ab76942	Set163	PTPN12	0.7953751
+AGID00218	1290	4976	Set163	Puma	0.1612102
+AGID00200	1242	SAB2900066	Old	PYGB	NA
+AGID00535	1494	ab61013	Old	PYGL	NA
+AGID00202	1245	H00005837-M10	Old	PYGM	NA
+AGID00275	1607	3291	Set163	Pyk2_pY402	0.03824965
+AGID00145	1083	3539	Old	RAB11	0.069604
+AGID00169	1150	4314	Old	RAB25	-0.16453
+AGID00342	1979	24555	Set163	Rad23A	-0.4822199
+AGID00261	987	05-525	Old	RAD50	-0.39163
+AGID00360	579	NA71	Old	RAD51	-0.059555
+AGID00158	1128	2280	Old	RAPTOR	0.33311
+AGID00059	552	9309	Old	RB	-0.043149
+AGID00060	557	9308	Old	RB_pS807S811	-0.18969
+AGID00164	1138	21390002	Old	RBM15	0.10603
+AGID00547	735	3221	Old	RET_pY905	NA
+AGID00097	847	MAB3426	Set163	Rheb	-0.1856249
+AGID00159	1129	2114	Old	RICTOR	0.29603
+AGID00160	1130	3806	Old	RICTOR_pT1135	0.35572
+AGID00282	1624	4926	Set163	RIP	-0.2618198
+AGID00283	1625	13526	Set163	RIP3	-0.08520552
+AGID00416	1368	2208	Set163	RPA32	-0.6012498
+AGID00246	1375	A300-245A	Set163	RPA32_pS4_S8	-0.06376587
+AGID00341	1978	3388	Set163	RRM1	-0.18197
+AGID00344	1981	PA5-27856	Set163	RRM2	-0.3021514
+AGID00554	2425	8408	Set163	RSK1	-0.8262826
+AGID00353	2031	13018	Set163	S100A4	0.2720402
+AGID00330	1874	2317	Old	S6	-0.9137
+AGID00062	600	2211	Old	S6_pS235S236	0.37995
+AGID00063	601	2215	Old	S6_pS240S244	0.14212
+AGID00157	1127	sc-58420	Old	SCD1	-0.31671
+AGID00230	1339	11998	Set163	SDHA	-0.2401248
+AGID00294	1039	ab69836	Old	SETD2	-0.20067
+AGID00161	1131	32-4500	Old	SF2	-0.41129
+AGID02179	2495	3534	Set163	SFRP1	-0.1723308
+AGID00431	2411	12103	Set163	SGK1	0.4081245
+AGID00430	2409	8156	Set163	SGK3	0.5486002
+AGID02168	2476	bs-3413R	Old	SHC_pY317	-0.067489
+AGID00376	2241	3397	Set163	SHP2	0.336425
+AGID00183	1180	3751	Old	SHP2_pY542	0.3808
+AGID02208	2570	ab8120	Set163	SIRP-alpha	0.1366296
+AGID00222	1133	sc-99002	Old	SLC1A5	-0.31713
+AGID00255	1411	sc-136891	Set163	Slfn11	-0.3057349
+AGID00064	610	2954	Old	SMAC	0.13567
+AGID00113	922	1649-1/ab33902	Old	SMAD1	-0.056833
+AGID00091	796	1735-1/ab40854	Old	SMAD3	-0.19349
+AGID02160	2467	46535	Old	SMAD4	-0.23073
+AGID00065	616	3895	Old	SNAIL	-0.024302
+AGID00325	1818	4266	Set163	SOD1	-0.07943626
+AGID00380	1328	13141	Set163	SOD2	0
+AGID00298	1670	2748	Set163	Sox2	-0.01801498
+AGID00066	621	05-184	Old	SRC	-0.14125
+AGID02157	2463	6943	Old	SRC_pY416	0.62453
+AGID00068	626	2105	Old	SRC_pY527	0.28039
+AGID00185	1197	4904	Set163	Stat3	-0.2926179
+AGID00388	637	9131	Old	STAT3_pY705	-0.17456
+AGID00069	638	1289-1/ab32043	Old	STAT5ALPHA	0.22113
+AGID00077	718	1972-1/ab52630	Old	STATHMIN	-0.027583
+AGID00357	2099	13647	Set163	STING	0.3256402
+AGID00128	1033	sc-1240	Old	SYK	0.025719
+AGID00070	646	05-348	Set163	Tau	-0.3274598
+AGID00327	777	2149	Old	TAZ	0.35998
+AGID00228	1333	7495	Set163	TFAM	-0.6124011
+AGID00165	1140	22500002	Old	TFRC	-0.76228
+AGID00149	1107	S1711/ab137573	Old	TIGAR	-0.045611
+AGID00109	908	MS-224-P1	Old	TRANSGLUTAMINASE	-0.29855
+AGID00406	2370	612344	Set163	TRAP1	-0.2122448
+AGID00559	2537	PA5-34561	Set163	TRIM24	-0.09023202
+AGID00306	1756	ab167154	Set163	TRIM25	-0.1353805
+AGID00426	2400	PA5-52193	Set163	TRIP13	0.03422023
+AGID00155	1125	4906	Old	TSC1	-0.08412
+AGID00144	1081	2044-1/ab76013	Old	TTF1	NA
+AGID00071	670	1613-1/ab32554	Old	TUBERIN	0.26529
+AGID02194	2511	ab109403	Old	TUBERIN_pT1462	-0.066559
+AGID00417	1842	ab173300	Set163	TUFM	0.3606052
+AGID00238	1353	sc-81417	Set163	Twist	-0.02955477
+AGID00436	1080	5585	Set163	Tyro3	0.3093647
+AGID00295	1662	5546	Set163	U-Histone-H2B	-1.39831
+AGID00214	1270	HPA005651	Set163	UBAC1	0.1491001
+AGID00351	2020	sc-136145	Set163	UBQLN4	-0.1340848
+AGID00213	1267	sc-271268	Set163	UGT1A	-0.07108977
+AGID00284	1626	6888	Set163	ULK1_pS757	-0.2934627
+AGID00208	1256	MS304/ab14745	Set163	UQCRC2	-0.3205348
+AGID00313	1781	13115	Set163	UVRAG	-0.1834248
+AGID00073	678	3112	Set163	VASP	0.2315649
+AGID00184	1181	2502	Set163	VAV1	0.8200093
+AGID00074	688	2479	Old	VEGFR2	0.70767
+AGID00421	2394	68547	Set163	VHL	0.1595952
+AGID00231	1343	SAB4200080	Set163	Vinculin	0.6922548
+AGID00317	1802	4936	Set163	Wee1	-0.723861
+AGID00354	2058	4910	Set163	Wee1_pS642	0.288615
+AGID00285	1627	12124	Set163	WIPI1	0.1229452
+AGID00286	1628	8567	Set163	WIPI2	-0.1901398
+AGID02214	2576	ab195380	Set163	WTAP	-0.3095955
+AGID00133	1044	sc-32136	Old	XBP1	0.020118
+AGID00076	699	2042	Set163	XIAP	0.4166447
+AGID00241	1359	sc-56813	Set163	XPA	-0.07525977
+AGID00349	1354	ab3299	Set163	XPF	0.3975726
+AGID02137	2440	PA5-29359	Old	XRCC1	-0.37455
+AGID00088	780	sc-15407	Old	YAP	-0.1954
+AGID00089	782	4911	Old	YAP_pS127	0.24421
+AGID00504	700	17250002	Old	YB1	0.44855
+AGID00095	835	2900	Old	YB1_pS102	-0.028931
+AGID02217	2579	ab220163	Set163	YTHDF2	-0.7941798
+AGID02210	2572	ab220161	Set163	YTHDF3	-0.3755748
+AGID00326	1828	2705	Set163	ZAP-70	-0.4629919
+AGID00432	2244	sc-25388	Set163	ZEB1	0.7292035

data/gdc_data_organized/8f912a40-3251-4e1f-ae65-1f93d71f9881/TCGA-EW-A1OZ-01Z-00-DX1.9639BB06-FF02-475F-A89D-773BE12721CC.svs

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+size 2148780817

data/gdc_data_organized/8f912a40-3251-4e1f-ae65-1f93d71f9881/cbeb48f8-eb79-4db3-b077-ba394031edee.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	23244	7085.446942	N
+hsa-let-7a-2	23235	7082.703480	N
+hsa-let-7a-3	23274	7094.591814	N
+hsa-let-7b	18621	5676.222144	N
+hsa-let-7c	2444	745.002251	N
+hsa-let-7d	839	255.751591	N
+hsa-let-7e	2150	655.382504	N
+hsa-let-7f-1	3137	956.248798	N
+hsa-let-7f-2	3129	953.810165	N
+hsa-let-7g	842	256.666078	N
+hsa-let-7i	1393	424.626897	N
+hsa-mir-1-1	4	1.219316	N
+hsa-mir-1-2	3	0.914487	N
+hsa-mir-100	6223	1896.951313	N
+hsa-mir-101-1	9886	3013.540203	N
+hsa-mir-101-2	9960	3036.097554	N
+hsa-mir-103a-1	27753	8459.921226	Y
+hsa-mir-103a-2	27965	8524.544989	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	1	0.304829	N
+hsa-mir-105-2	0	0.000000	N
+hsa-mir-106a	69	21.033206	Y
+hsa-mir-106b	1207	367.928690	N
+hsa-mir-107	132	40.237437	Y
+hsa-mir-10a	33116	10094.719537	N
+hsa-mir-10b	131108	39965.529929	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	0	0.000000	N
+hsa-mir-1180	3	0.914487	N
+hsa-mir-1181	2	0.609658	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
+hsa-mir-1184-1	0	0.000000	N
+hsa-mir-1184-2	0	0.000000	N
+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	0	0.000000	N
+hsa-mir-1185-2	0	0.000000	N
+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	0	0.000000	N
+hsa-mir-1199	1	0.304829	N
+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	0	0.000000	N
+hsa-mir-1224	1	0.304829	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	14	4.267607	N
+hsa-mir-1227	0	0.000000	N
+hsa-mir-1228	5	1.524145	N
+hsa-mir-1229	1	0.304829	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	0	0.000000	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	0	0.000000	N
+hsa-mir-1238	0	0.000000	N
+hsa-mir-124-1	0	0.000000	N
+hsa-mir-124-2	0	0.000000	N
+hsa-mir-124-3	0	0.000000	N
+hsa-mir-1243	0	0.000000	N
+hsa-mir-1244-1	0	0.000000	N
+hsa-mir-1244-2	0	0.000000	N
+hsa-mir-1244-3	0	0.000000	N
+hsa-mir-1244-4	0	0.000000	N
+hsa-mir-1245a	6	1.828974	N
+hsa-mir-1245b	0	0.000000	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	97	29.568420	N
+hsa-mir-1248	2	0.609658	N
+hsa-mir-1249	15	4.572436	N
+hsa-mir-1250	0	0.000000	N
+hsa-mir-1251	9	2.743462	N
+hsa-mir-1252	0	0.000000	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	0	0.000000	N
+hsa-mir-1254-2	1	0.304829	N
+hsa-mir-1255a	5	1.524145	N
+hsa-mir-1255b-1	0	0.000000	N
+hsa-mir-1255b-2	0	0.000000	N
+hsa-mir-1256	0	0.000000	N
+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	0	0.000000	N
+hsa-mir-125a	1902	579.784894	N
+hsa-mir-125b-1	828	252.398471	N
+hsa-mir-125b-2	784	238.985992	N
+hsa-mir-126	10695	3260.146922	N
+hsa-mir-1260a	0	0.000000	N
+hsa-mir-1260b	1	0.304829	N
+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	2	0.609658	N
+hsa-mir-1263	0	0.000000	N
+hsa-mir-1264	0	0.000000	N
+hsa-mir-1265	0	0.000000	N
+hsa-mir-1266	36	10.973847	N
+hsa-mir-1267	0	0.000000	N
+hsa-mir-1268a	0	0.000000	N
+hsa-mir-1268b	0	0.000000	N
+hsa-mir-1269a	2	0.609658	N
+hsa-mir-1269b	0	0.000000	N
+hsa-mir-127	2738	834.621998	N
+hsa-mir-1270	12	3.657949	N
+hsa-mir-1271	10	3.048291	N
+hsa-mir-1272	0	0.000000	N
+hsa-mir-1273a	0	0.000000	N
+hsa-mir-1273c	0	0.000000	N
+hsa-mir-1273d	0	0.000000	N
+hsa-mir-1273e	0	0.000000	N
+hsa-mir-1273f	0	0.000000	N
+hsa-mir-1273g	0	0.000000	N
+hsa-mir-1273h	0	0.000000	N
+hsa-mir-1275	1	0.304829	N
+hsa-mir-1276	0	0.000000	N
+hsa-mir-1277	15	4.572436	N
+hsa-mir-1278	0	0.000000	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	205	62.489960	N
+hsa-mir-128-2	128	39.018121	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
+hsa-mir-1283-1	1	0.304829	N
+hsa-mir-1283-2	2	0.609658	N
+hsa-mir-1284	1	0.304829	N
+hsa-mir-1285-1	1	0.304829	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	325	99.069448	N
+hsa-mir-1288	2	0.609658	N
+hsa-mir-1289-1	0	0.000000	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	1	0.304829	N
+hsa-mir-129-2	0	0.000000	N
+hsa-mir-1290	0	0.000000	N
+hsa-mir-1291	6	1.828974	N
+hsa-mir-1292	1	0.304829	N
+hsa-mir-1293	0	0.000000	N
+hsa-mir-1294	0	0.000000	N
+hsa-mir-1295a	3	0.914487	N
+hsa-mir-1295b	0	0.000000	N
+hsa-mir-1296	31	9.449701	N
+hsa-mir-1297	0	0.000000	N
+hsa-mir-1298	0	0.000000	N
+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	52	15.851112	N
+hsa-mir-1302-1	0	0.000000	N
+hsa-mir-1302-10	0	0.000000	N
+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
+hsa-mir-1302-7	0	0.000000	N
+hsa-mir-1302-8	0	0.000000	N
+hsa-mir-1302-9	0	0.000000	N
+hsa-mir-1303	0	0.000000	N
+hsa-mir-1304	2	0.609658	N
+hsa-mir-1305	7	2.133804	N
+hsa-mir-1306	203	61.880302	N
+hsa-mir-1307	7016	2138.680767	N
+hsa-mir-130a	209	63.709276	N
+hsa-mir-130b	65	19.813890	N
+hsa-mir-132	248	75.597610	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	2	0.609658	N
+hsa-mir-133a-2	3	0.914487	N
+hsa-mir-133b	0	0.000000	N
+hsa-mir-134	1112	338.969928	N
+hsa-mir-1343	5	1.524145	N
+hsa-mir-135a-1	1	0.304829	N
+hsa-mir-135a-2	5	1.524145	N
+hsa-mir-135b	4	1.219316	N
+hsa-mir-136	226	68.891370	N
+hsa-mir-137	0	0.000000	N
+hsa-mir-138-1	0	0.000000	N
+hsa-mir-138-2	2	0.609658	N
+hsa-mir-139	64	19.509061	N
+hsa-mir-140	1147	349.638945	N
+hsa-mir-141	5817	1773.190710	N
+hsa-mir-142	10098	3078.163966	N
+hsa-mir-143	115562	35226.657180	N
+hsa-mir-144	69	21.033206	N
+hsa-mir-145	3565	1086.715641	N
+hsa-mir-1468	54	16.460770	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	263	80.170046	N
+hsa-mir-146b	2097	639.226563	N
+hsa-mir-1470	0	0.000000	N
+hsa-mir-1471	0	0.000000	N
+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	1	0.304829	N
+hsa-mir-148a	94502	28806.956931	N
+hsa-mir-148b	722	220.086590	N
+hsa-mir-149	2870	874.859436	N
+hsa-mir-150	2018	615.145067	N
+hsa-mir-151a	6262	1908.839647	N
+hsa-mir-151b	2	0.609658	N
+hsa-mir-152	742	226.183171	N
+hsa-mir-153-1	2	0.609658	N
+hsa-mir-153-2	87	26.520129	N
+hsa-mir-1537	4	1.219316	N
+hsa-mir-1538	1	0.304829	N
+hsa-mir-1539	1	0.304829	N
+hsa-mir-154	27	8.230385	N
+hsa-mir-155	1148	349.943774	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	325	99.069448	N
+hsa-mir-15b	449	136.868253	N
+hsa-mir-16-1	806	245.692232	N
+hsa-mir-16-2	867	264.286805	N
+hsa-mir-17	1395	425.236555	Y
+hsa-mir-181a-1	3039	926.375549	N
+hsa-mir-181a-2	5023	1531.156427	N
+hsa-mir-181b-1	456	139.002057	N
+hsa-mir-181b-2	307	93.582525	N
+hsa-mir-181c	189	57.612695	N
+hsa-mir-181d	25	7.620727	N
+hsa-mir-182	92016	28049.151859	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	79286	24168.677776	N
+hsa-mir-184	21	6.401411	N
+hsa-mir-185	243	74.073464	N
+hsa-mir-186	526	160.340092	N
+hsa-mir-187	123	37.493976	N
+hsa-mir-188	13	3.962778	N
+hsa-mir-18a	24	7.315898	N
+hsa-mir-18b	2	0.609658	N
+hsa-mir-1908	1	0.304829	N
+hsa-mir-1909	0	0.000000	N
+hsa-mir-190a	10	3.048291	N
+hsa-mir-190b	5	1.524145	N
+hsa-mir-191	11461	3493.645990	N
+hsa-mir-1910	4	1.219316	N
+hsa-mir-1911	0	0.000000	N
+hsa-mir-1912	0	0.000000	N
+hsa-mir-1913	0	0.000000	N
+hsa-mir-1914	0	0.000000	N
+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	1444	440.173179	Y
+hsa-mir-193a	3016	919.364480	N
+hsa-mir-193b	388	118.273680	N
+hsa-mir-194-1	199	60.660985	N
+hsa-mir-194-2	201	61.270643	N
+hsa-mir-195	87	26.520129	N
+hsa-mir-196a-1	2740	835.231656	N
+hsa-mir-196a-2	3217	980.635124	N
+hsa-mir-196b	699	213.075521	N
+hsa-mir-197	2188	666.966009	N
+hsa-mir-1972-1	0	0.000000	N
+hsa-mir-1972-2	0	0.000000	N
+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	22	6.706240	N
+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	8283	2524.899201	Y
+hsa-mir-199a-2	14176	4321.256920	Y
+hsa-mir-199b	18576	5662.504835	Y
+hsa-mir-19a	97	29.568420	N
+hsa-mir-19b-1	212	64.623763	N
+hsa-mir-19b-2	202	61.575472	N
+hsa-mir-200a	2067	630.081691	N
+hsa-mir-200b	1416	431.637965	N
+hsa-mir-200c	41879	12765.936692	N
+hsa-mir-202	2	0.609658	N
+hsa-mir-203a	92620	28233.268618	N
+hsa-mir-203b	2509	764.816141	N
+hsa-mir-204	3	0.914487	N
+hsa-mir-205	13588	4142.017426	N
+hsa-mir-2052	0	0.000000	N
+hsa-mir-2053	0	0.000000	N
+hsa-mir-2054	0	0.000000	N
+hsa-mir-206	0	0.000000	N
+hsa-mir-208a	0	0.000000	N
+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	460	140.221373	N
+hsa-mir-20b	238	72.549319	N
+hsa-mir-21	1527054	465490.453211	N
+hsa-mir-210	5257	1602.486430	N
+hsa-mir-211	0	0.000000	N
+hsa-mir-2110	8	2.438633	N
+hsa-mir-2113	0	0.000000	N
+hsa-mir-2114	14	4.267607	N
+hsa-mir-2115	0	0.000000	N
+hsa-mir-2116	1	0.304829	N
+hsa-mir-2117	0	0.000000	N
+hsa-mir-212	16	4.877265	N
+hsa-mir-214	122	37.189147	N
+hsa-mir-215	10	3.048291	Y
+hsa-mir-216a	0	0.000000	N
+hsa-mir-216b	1	0.304829	N
+hsa-mir-217	26	7.925556	N
+hsa-mir-218-1	56	17.070428	N
+hsa-mir-218-2	49	14.936625	N
+hsa-mir-219a-1	14	4.267607	N
+hsa-mir-219a-2	0	0.000000	N
+hsa-mir-219b	2	0.609658	N
+hsa-mir-22	283474	86411.116263	N
+hsa-mir-221	302	92.058380	N
+hsa-mir-222	145	44.200215	N
+hsa-mir-223	280	85.352140	N
+hsa-mir-224	30	9.144872	N
+hsa-mir-2276	4	1.219316	N
+hsa-mir-2277	15	4.572436	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	267	81.389362	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	14334	4369.419913	Y
+hsa-mir-23b	2378	724.883532	Y
+hsa-mir-23c	1	0.304829	N
+hsa-mir-24-1	3207	977.586833	N
+hsa-mir-24-2	3197	974.538542	N
+hsa-mir-2467	0	0.000000	N
+hsa-mir-25	27892	8502.292467	N
+hsa-mir-2681	0	0.000000	N
+hsa-mir-2682	1	0.304829	N
+hsa-mir-26a-1	1781	542.900577	N
+hsa-mir-26a-2	1662	506.625917	N
+hsa-mir-26b	2667	812.979134	N
+hsa-mir-27a	4304	1311.984324	Y
+hsa-mir-27b	1752	534.060534	Y
+hsa-mir-28	9649	2941.295713	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	44	13.412479	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	18	5.486923	N
+hsa-mir-29a	7294	2223.423249	N
+hsa-mir-29b-1	361	110.043295	N
+hsa-mir-29b-2	488	148.756587	N
+hsa-mir-29c	2718	828.525417	N
+hsa-mir-300	0	0.000000	N
+hsa-mir-301a	164	49.991968	N
+hsa-mir-301b	4	1.219316	N
+hsa-mir-302a	0	0.000000	N
+hsa-mir-302b	0	0.000000	N
+hsa-mir-302c	0	0.000000	N
+hsa-mir-302d	0	0.000000	N
+hsa-mir-302e	0	0.000000	N
+hsa-mir-302f	0	0.000000	N
+hsa-mir-3064	3	0.914487	N
+hsa-mir-3065	54	16.460770	N
+hsa-mir-3074	183	55.783720	N
+hsa-mir-30a	86200	26276.265978	Y
+hsa-mir-30b	1247	380.121852	Y
+hsa-mir-30c-1	740	225.573513	Y
+hsa-mir-30c-2	825	251.483984	Y
+hsa-mir-30d	18763	5719.507872	N
+hsa-mir-30e	28238	8607.763326	Y
+hsa-mir-31	7	2.133804	N
+hsa-mir-3115	0	0.000000	N
+hsa-mir-3116-1	0	0.000000	N
+hsa-mir-3116-2	0	0.000000	N
+hsa-mir-3117	0	0.000000	N
+hsa-mir-3118-1	0	0.000000	N
+hsa-mir-3118-2	0	0.000000	N
+hsa-mir-3118-3	0	0.000000	N
+hsa-mir-3118-4	0	0.000000	N
+hsa-mir-3119-1	0	0.000000	N
+hsa-mir-3119-2	0	0.000000	N
+hsa-mir-3120	0	0.000000	N
+hsa-mir-3121	0	0.000000	N
+hsa-mir-3122	0	0.000000	N
+hsa-mir-3123	0	0.000000	N
+hsa-mir-3124	0	0.000000	N
+hsa-mir-3125	0	0.000000	N
+hsa-mir-3126	0	0.000000	N
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+hsa-mir-320a	834	254.227446	Y
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+hsa-mir-329-2	2	0.609658	N
+hsa-mir-330	69	21.033206	N
+hsa-mir-331	234	71.330003	N
+hsa-mir-335	287	87.485944	N
+hsa-mir-337	143	43.590557	N
+hsa-mir-338	544	165.827015	N
+hsa-mir-339	222	67.672054	N
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+hsa-mir-33b	41	12.497992	N
+hsa-mir-340	96	29.263591	N
+hsa-mir-342	708	215.818983	N
+hsa-mir-345	143	43.590557	N
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+hsa-mir-34a	329	100.288765	N
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+hsa-mir-361	901	274.650994	N
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+hsa-mir-3611	1	0.304829	N
+hsa-mir-3612	0	0.000000	N
+hsa-mir-3613	43	13.107650	N
+hsa-mir-3614	18	5.486923	N
+hsa-mir-3615	10	3.048291	N
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+hsa-mir-362	75	22.862180	N
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+hsa-mir-3659	0	0.000000	N
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+hsa-mir-365b	509	155.157997	Y
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+hsa-mir-3663	0	0.000000	N
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+hsa-mir-374c	3	0.914487	Y
+hsa-mir-375	6073	1851.226952	N
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+hsa-mir-376c	13	3.962778	Y
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+hsa-mir-423	2516	766.949944	N
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+hsa-mir-4441	0	0.000000	N
+hsa-mir-4442	2	0.609658	N
+hsa-mir-4443	0	0.000000	N
+hsa-mir-4444-1	1	0.304829	N
+hsa-mir-4444-2	0	0.000000	N
+hsa-mir-4445	0	0.000000	N
+hsa-mir-4446	2	0.609658	N
+hsa-mir-4447	0	0.000000	N
+hsa-mir-4448	0	0.000000	N
+hsa-mir-4449	4	1.219316	N
+hsa-mir-4450	0	0.000000	N
+hsa-mir-4451	0	0.000000	N
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+hsa-mir-450a-2	9	2.743462	N
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+hsa-mir-451a	277	84.437653	N
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+hsa-mir-4639	0	0.000000	N
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+hsa-mir-4660	1	0.304829	N
+hsa-mir-4661	27	8.230385	N
+hsa-mir-4662a	14	4.267607	N
+hsa-mir-4662b	0	0.000000	N
+hsa-mir-4663	1	0.304829	N
+hsa-mir-4664	4	1.219316	N
+hsa-mir-4665	1	0.304829	N
+hsa-mir-4666a	0	0.000000	N
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+hsa-mir-4667	0	0.000000	N
+hsa-mir-4668	29	8.840043	N
+hsa-mir-4669	1	0.304829	N
+hsa-mir-4670	1	0.304829	N
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+hsa-mir-4674	0	0.000000	N
+hsa-mir-4675	1	0.304829	N
+hsa-mir-4676	3	0.914487	N
+hsa-mir-4677	44	13.412479	N
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+hsa-mir-4684	0	0.000000	N
+hsa-mir-4685	1	0.304829	N
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+hsa-mir-4712	1	0.304829	N
+hsa-mir-4713	1	0.304829	N
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+hsa-mir-4715	0	0.000000	N
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+hsa-mir-515-2	0	0.000000	N
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+hsa-mir-516b-2	0	0.000000	N
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+hsa-mir-517c	2	0.609658	N
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+hsa-mir-532	2301	701.411694	N
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+hsa-mir-541	0	0.000000	N
+hsa-mir-542	496	151.195220	N
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+hsa-mir-544b	0	0.000000	N
+hsa-mir-545	8	2.438633	N
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+hsa-mir-548ae-2	0	0.000000	N
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+hsa-mir-548ap	0	0.000000	N
+hsa-mir-548aq	0	0.000000	N
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+hsa-mir-652	285	86.876285	N
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+hsa-mir-6774	0	0.000000	N
+hsa-mir-6775	1	0.304829	N
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+hsa-mir-6777	2	0.609658	N
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+hsa-mir-6798	1	0.304829	N
+hsa-mir-6799	1	0.304829	N
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+hsa-mir-6801	0	0.000000	N
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+hsa-mir-6818	2	0.609658	N
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+hsa-mir-6838	0	0.000000	N
+hsa-mir-6839	1	0.304829	N
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+hsa-mir-6842	2	0.609658	N
+hsa-mir-6843	0	0.000000	N
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+hsa-mir-6845	1	0.304829	N
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+hsa-mir-6853	0	0.000000	N
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+hsa-mir-6859-4	0	0.000000	N
+hsa-mir-6860	0	0.000000	N
+hsa-mir-6861	2	0.609658	N
+hsa-mir-6862-1	0	0.000000	N
+hsa-mir-6862-2	0	0.000000	N
+hsa-mir-6863	0	0.000000	N
+hsa-mir-6864	0	0.000000	N
+hsa-mir-6865	0	0.000000	N
+hsa-mir-6866	0	0.000000	N
+hsa-mir-6867	0	0.000000	N
+hsa-mir-6868	0	0.000000	N
+hsa-mir-6869	0	0.000000	N
+hsa-mir-6870	0	0.000000	N
+hsa-mir-6871	2	0.609658	N
+hsa-mir-6872	1	0.304829	N
+hsa-mir-6873	0	0.000000	N
+hsa-mir-6874	0	0.000000	N
+hsa-mir-6875	0	0.000000	N
+hsa-mir-6876	0	0.000000	N
+hsa-mir-6877	0	0.000000	N
+hsa-mir-6878	0	0.000000	N
+hsa-mir-6879	1	0.304829	N
+hsa-mir-6880	1	0.304829	N
+hsa-mir-6881	0	0.000000	N
+hsa-mir-6882	0	0.000000	N
+hsa-mir-6883	0	0.000000	N
+hsa-mir-6884	0	0.000000	N
+hsa-mir-6885	1	0.304829	N
+hsa-mir-6886	0	0.000000	N
+hsa-mir-6887	0	0.000000	N
+hsa-mir-6888	0	0.000000	N
+hsa-mir-6889	1	0.304829	N
+hsa-mir-6890	0	0.000000	N
+hsa-mir-6891	0	0.000000	N
+hsa-mir-6892	4	1.219316	N
+hsa-mir-6893	0	0.000000	N
+hsa-mir-6894	1	0.304829	N
+hsa-mir-6895	2	0.609658	N
+hsa-mir-7-1	163	49.687139	N
+hsa-mir-7-2	0	0.000000	N
+hsa-mir-7-3	2	0.609658	N
+hsa-mir-708	442	134.734450	N
+hsa-mir-7106	0	0.000000	N
+hsa-mir-7107	0	0.000000	N
+hsa-mir-7108	0	0.000000	N
+hsa-mir-7109	0	0.000000	N
+hsa-mir-711	0	0.000000	N
+hsa-mir-7110	1	0.304829	N
+hsa-mir-7111	0	0.000000	N
+hsa-mir-7112	8	2.438633	N
+hsa-mir-7113	0	0.000000	N
+hsa-mir-7114	1	0.304829	N
+hsa-mir-7150	0	0.000000	N
+hsa-mir-7151	1	0.304829	N
+hsa-mir-7152	0	0.000000	N
+hsa-mir-7153	0	0.000000	N
+hsa-mir-7154	0	0.000000	N
+hsa-mir-7155	0	0.000000	N
+hsa-mir-7156	2	0.609658	N
+hsa-mir-7157	0	0.000000	N
+hsa-mir-7158	2	0.609658	N
+hsa-mir-7159	0	0.000000	N
+hsa-mir-7160	0	0.000000	N
+hsa-mir-7161	0	0.000000	N
+hsa-mir-7162	0	0.000000	N
+hsa-mir-718	0	0.000000	N
+hsa-mir-744	51	15.546283	N
+hsa-mir-7515	0	0.000000	N
+hsa-mir-758	51	15.546283	N
+hsa-mir-759	0	0.000000	N
+hsa-mir-760	4	1.219316	N
+hsa-mir-761	0	0.000000	N
+hsa-mir-762	0	0.000000	N
+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	3	0.914487	N
+hsa-mir-766	63	19.204232	N
+hsa-mir-767	0	0.000000	N
+hsa-mir-769	139	42.371241	N
+hsa-mir-770	0	0.000000	N
+hsa-mir-7702	0	0.000000	N
+hsa-mir-7703	0	0.000000	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	7	2.133804	N
+hsa-mir-7706	8	2.438633	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	1	0.304829	N
+hsa-mir-7845	0	0.000000	N
+hsa-mir-7846	0	0.000000	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	0	0.000000	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	0	0.000000	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	0	0.000000	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
+hsa-mir-8053	0	0.000000	N
+hsa-mir-8054	0	0.000000	N
+hsa-mir-8055	0	0.000000	N
+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
+hsa-mir-8061	0	0.000000	N
+hsa-mir-8062	0	0.000000	N
+hsa-mir-8063	0	0.000000	N
+hsa-mir-8064	0	0.000000	N
+hsa-mir-8065	0	0.000000	N
+hsa-mir-8066	0	0.000000	N
+hsa-mir-8067	0	0.000000	N
+hsa-mir-8068	0	0.000000	N
+hsa-mir-8069-1	0	0.000000	N
+hsa-mir-8069-2	0	0.000000	N
+hsa-mir-8070	0	0.000000	N
+hsa-mir-8071-1	0	0.000000	N
+hsa-mir-8071-2	0	0.000000	N
+hsa-mir-8072	0	0.000000	N
+hsa-mir-8073	0	0.000000	N
+hsa-mir-8074	0	0.000000	N
+hsa-mir-8075	0	0.000000	N
+hsa-mir-8076	0	0.000000	N
+hsa-mir-8077	0	0.000000	N
+hsa-mir-8078	0	0.000000	N
+hsa-mir-8079	0	0.000000	N
+hsa-mir-8080	0	0.000000	N
+hsa-mir-8081	0	0.000000	N
+hsa-mir-8082	0	0.000000	N
+hsa-mir-8083	0	0.000000	N
+hsa-mir-8084	0	0.000000	N
+hsa-mir-8085	0	0.000000	N
+hsa-mir-8086	0	0.000000	N
+hsa-mir-8087	0	0.000000	N
+hsa-mir-8088	0	0.000000	N
+hsa-mir-8089	0	0.000000	N
+hsa-mir-8485	0	0.000000	N
+hsa-mir-873	0	0.000000	N
+hsa-mir-874	148	45.114703	N
+hsa-mir-875	0	0.000000	N
+hsa-mir-876	0	0.000000	N
+hsa-mir-877	2	0.609658	N
+hsa-mir-885	2	0.609658	N
+hsa-mir-887	19	5.791752	N
+hsa-mir-888	0	0.000000	N
+hsa-mir-889	33	10.059359	N
+hsa-mir-890	0	0.000000	N
+hsa-mir-891a	5	1.524145	N
+hsa-mir-891b	0	0.000000	N
+hsa-mir-892a	0	0.000000	N
+hsa-mir-892b	0	0.000000	N
+hsa-mir-892c	0	0.000000	N
+hsa-mir-9-1	151	46.029190	N
+hsa-mir-9-2	141	42.980899	N
+hsa-mir-9-3	142	43.285728	N
+hsa-mir-920	0	0.000000	N
+hsa-mir-921	0	0.000000	N
+hsa-mir-922	0	0.000000	N
+hsa-mir-924	0	0.000000	N
+hsa-mir-92a-1	12637	3852.124979	N
+hsa-mir-92a-2	11702	3567.109797	N
+hsa-mir-92b	396	120.712312	N
+hsa-mir-93	12962	3951.194427	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	0	0.000000	N
+hsa-mir-935	94	28.653933	N
+hsa-mir-936	0	0.000000	N
+hsa-mir-937	2	0.609658	N
+hsa-mir-938	0	0.000000	N
+hsa-mir-939	5	1.524145	N
+hsa-mir-940	61	18.594573	N
+hsa-mir-941-1	0	0.000000	N
+hsa-mir-941-2	0	0.000000	N
+hsa-mir-941-3	0	0.000000	N
+hsa-mir-941-4	0	0.000000	N
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+hsa-mir-942	29	8.840043	N
+hsa-mir-943	0	0.000000	N
+hsa-mir-944	1	0.304829	N
+hsa-mir-95	3	0.914487	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	116	35.360172	N
+hsa-mir-98	75	22.862180	N
+hsa-mir-99a	960	292.635909	N
+hsa-mir-99b	114076	34773.681180	N

data/gdc_data_organized/8f912a40-3251-4e1f-ae65-1f93d71f9881/fe2569bd-19b3-4982-ade7-86a52a637b9b.methylation_array.sesame.level3betas.txt

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+oid sha256:626be228749745fded1485a417e419352b4cb82eb66165ec767cade1297d4b94
+size 13162724

data/gdc_data_organized/8f9ad301-6699-4078-a80d-886e40894af7/184deddc-0e07-46d4-bf99-5ad82e446300.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	71377	13465.232000	N
+hsa-let-7a-2	70838	13363.549945	N
+hsa-let-7a-3	71182	13428.445357	N
+hsa-let-7b	156778	29576.083928	N
+hsa-let-7c	15033	2835.967226	N
+hsa-let-7d	1003	189.215401	N
+hsa-let-7e	3160	596.132271	N
+hsa-let-7f-1	16816	3172.329200	N
+hsa-let-7f-2	16745	3158.935089	N
+hsa-let-7g	2045	385.788131	N
+hsa-let-7i	1917	361.641001	N
+hsa-mir-1-1	9	1.697845	N
+hsa-mir-1-2	14	2.641092	N
+hsa-mir-100	27421	5172.956648	N
+hsa-mir-101-1	72525	13681.801572	N
+hsa-mir-101-2	73140	13797.820986	N
+hsa-mir-103a-1	58397	11016.562101	Y
+hsa-mir-103a-2	58435	11023.730781	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	0	0.000000	N
+hsa-mir-105-2	1	0.188649	N
+hsa-mir-106a	33	6.225432	Y
+hsa-mir-106b	2208	416.537992	N
+hsa-mir-107	551	103.945849	Y
+hsa-mir-10a	98758	18630.642670	N
+hsa-mir-10b	258395	48746.075384	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	0	0.000000	N
+hsa-mir-1180	50	9.432473	N
+hsa-mir-1181	0	0.000000	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
+hsa-mir-1184-1	0	0.000000	N
+hsa-mir-1184-2	0	0.000000	N
+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	0	0.000000	N
+hsa-mir-1185-2	0	0.000000	N
+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	0	0.000000	N
+hsa-mir-1199	0	0.000000	N
+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	0	0.000000	N
+hsa-mir-1224	3	0.565948	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	2	0.377299	N
+hsa-mir-1227	0	0.000000	N
+hsa-mir-1228	9	1.697845	N
+hsa-mir-1229	0	0.000000	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	0	0.000000	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	0	0.000000	N
+hsa-mir-1238	0	0.000000	N
+hsa-mir-124-1	0	0.000000	N
+hsa-mir-124-2	0	0.000000	N
+hsa-mir-124-3	0	0.000000	N
+hsa-mir-1243	0	0.000000	N
+hsa-mir-1244-1	0	0.000000	N
+hsa-mir-1244-2	0	0.000000	N
+hsa-mir-1244-3	0	0.000000	N
+hsa-mir-1244-4	0	0.000000	N
+hsa-mir-1245a	12	2.263793	N
+hsa-mir-1245b	1	0.188649	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	62	11.696266	N
+hsa-mir-1248	10	1.886495	N
+hsa-mir-1249	6	1.131897	N
+hsa-mir-1250	1	0.188649	N
+hsa-mir-1251	0	0.000000	N
+hsa-mir-1252	0	0.000000	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	1	0.188649	N
+hsa-mir-1254-2	0	0.000000	N
+hsa-mir-1255a	0	0.000000	N
+hsa-mir-1255b-1	0	0.000000	N
+hsa-mir-1255b-2	0	0.000000	N
+hsa-mir-1256	0	0.000000	N
+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	1	0.188649	N
+hsa-mir-125a	2778	524.068180	N
+hsa-mir-125b-1	1583	298.632084	N
+hsa-mir-125b-2	1791	337.871170	N
+hsa-mir-126	9589	1808.959604	N
+hsa-mir-1260a	0	0.000000	N
+hsa-mir-1260b	0	0.000000	N
+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	1	0.188649	N
+hsa-mir-1263	0	0.000000	N
+hsa-mir-1264	0	0.000000	N
+hsa-mir-1265	0	0.000000	N
+hsa-mir-1266	36	6.791380	N
+hsa-mir-1267	0	0.000000	N
+hsa-mir-1268a	0	0.000000	N
+hsa-mir-1268b	0	0.000000	N
+hsa-mir-1269a	0	0.000000	N
+hsa-mir-1269b	0	0.000000	N
+hsa-mir-127	3161	596.320921	N
+hsa-mir-1270	7	1.320546	N
+hsa-mir-1271	8	1.509196	N
+hsa-mir-1272	0	0.000000	N
+hsa-mir-1273a	0	0.000000	N
+hsa-mir-1273c	0	0.000000	N
+hsa-mir-1273d	0	0.000000	N
+hsa-mir-1273e	0	0.000000	N
+hsa-mir-1273f	0	0.000000	N
+hsa-mir-1273g	0	0.000000	N
+hsa-mir-1273h	0	0.000000	N
+hsa-mir-1275	0	0.000000	N
+hsa-mir-1276	1	0.188649	N
+hsa-mir-1277	3	0.565948	N
+hsa-mir-1278	1	0.188649	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	393	74.139235	N
+hsa-mir-128-2	296	55.840238	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
+hsa-mir-1283-1	0	0.000000	N
+hsa-mir-1283-2	0	0.000000	N
+hsa-mir-1284	1	0.188649	N
+hsa-mir-1285-1	0	0.000000	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	123	23.203883	N
+hsa-mir-1288	3	0.565948	N
+hsa-mir-1289-1	0	0.000000	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	1	0.188649	N
+hsa-mir-129-2	4	0.754598	N
+hsa-mir-1290	0	0.000000	N
+hsa-mir-1291	3	0.565948	N
+hsa-mir-1292	0	0.000000	N
+hsa-mir-1293	1	0.188649	N
+hsa-mir-1294	0	0.000000	N
+hsa-mir-1295a	1	0.188649	N
+hsa-mir-1295b	0	0.000000	N
+hsa-mir-1296	6	1.131897	N
+hsa-mir-1297	0	0.000000	N
+hsa-mir-1298	0	0.000000	N
+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	28	5.282185	N
+hsa-mir-1302-1	0	0.000000	N
+hsa-mir-1302-10	0	0.000000	N
+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
+hsa-mir-1302-7	0	0.000000	N
+hsa-mir-1302-8	0	0.000000	N
+hsa-mir-1302-9	0	0.000000	N
+hsa-mir-1303	0	0.000000	N
+hsa-mir-1304	0	0.000000	N
+hsa-mir-1305	0	0.000000	N
+hsa-mir-1306	17	3.207041	N
+hsa-mir-1307	2704	510.108121	N
+hsa-mir-130a	292	55.085640	N
+hsa-mir-130b	38	7.168679	N
+hsa-mir-132	337	63.574866	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	1	0.188649	Y
+hsa-mir-133a-2	3	0.565948	N
+hsa-mir-133b	1	0.188649	Y
+hsa-mir-134	859	162.049880	N
+hsa-mir-1343	3	0.565948	N
+hsa-mir-135a-1	0	0.000000	N
+hsa-mir-135a-2	1	0.188649	N
+hsa-mir-135b	51	9.621122	N
+hsa-mir-136	164	30.938510	N
+hsa-mir-137	0	0.000000	N
+hsa-mir-138-1	2	0.377299	N
+hsa-mir-138-2	0	0.000000	N
+hsa-mir-139	338	63.763515	N
+hsa-mir-140	4490	847.036044	N
+hsa-mir-141	10231	1930.072553	N
+hsa-mir-142	9615	1813.864490	N
+hsa-mir-143	344116	64917.295137	N
+hsa-mir-144	151	28.486067	N
+hsa-mir-145	4051	764.218934	N
+hsa-mir-1468	11	2.075144	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	463	87.344697	N
+hsa-mir-146b	1958	369.375629	N
+hsa-mir-1470	0	0.000000	N
+hsa-mir-1471	0	0.000000	N
+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	2	0.377299	N
+hsa-mir-148a	112251	21176.089738	N
+hsa-mir-148b	555	104.700446	N
+hsa-mir-149	126	23.769831	N
+hsa-mir-150	6834	1289.230361	N
+hsa-mir-151a	9825	1853.480875	N
+hsa-mir-151b	9	1.697845	N
+hsa-mir-152	795	149.976315	N
+hsa-mir-153-1	2	0.377299	N
+hsa-mir-153-2	55	10.375720	N
+hsa-mir-1537	0	0.000000	N
+hsa-mir-1538	3	0.565948	N
+hsa-mir-1539	0	0.000000	N
+hsa-mir-154	26	4.904886	N
+hsa-mir-155	1769	333.720882	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	1122	211.664686	N
+hsa-mir-15b	719	135.638957	N
+hsa-mir-16-1	1445	272.598459	N
+hsa-mir-16-2	1426	269.014120	N
+hsa-mir-17	2572	485.206393	Y
+hsa-mir-181a-1	4355	821.568367	N
+hsa-mir-181a-2	5988	1129.632924	N
+hsa-mir-181b-1	528	99.606911	N
+hsa-mir-181b-2	506	95.456623	N
+hsa-mir-181c	806	152.051459	N
+hsa-mir-181d	137	25.844975	N
+hsa-mir-182	75393	14222.848203	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	13811	2605.437594	N
+hsa-mir-184	95	17.921698	N
+hsa-mir-185	342	64.518113	N
+hsa-mir-186	474	89.419841	N
+hsa-mir-187	271	51.124002	N
+hsa-mir-188	5	0.943247	N
+hsa-mir-18a	21	3.961639	N
+hsa-mir-18b	1	0.188649	N
+hsa-mir-1908	0	0.000000	N
+hsa-mir-1909	0	0.000000	N
+hsa-mir-190a	12	2.263793	N
+hsa-mir-190b	70	13.205462	N
+hsa-mir-191	2202	415.406095	N
+hsa-mir-1910	0	0.000000	N
+hsa-mir-1911	0	0.000000	N
+hsa-mir-1912	0	0.000000	N
+hsa-mir-1913	0	0.000000	N
+hsa-mir-1914	1	0.188649	N
+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	3573	674.044495	Y
+hsa-mir-193a	1711	322.779214	N
+hsa-mir-193b	359	67.725154	N
+hsa-mir-194-1	730	137.714101	N
+hsa-mir-194-2	777	146.580625	N
+hsa-mir-195	362	68.291102	N
+hsa-mir-196a-1	380	71.686792	N
+hsa-mir-196a-2	392	73.950586	N
+hsa-mir-196b	331	62.442969	N
+hsa-mir-197	418	78.855471	N
+hsa-mir-1972-1	0	0.000000	N
+hsa-mir-1972-2	0	0.000000	N
+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	54	10.187070	N
+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	9775	1844.048402	Y
+hsa-mir-199a-2	15804	2981.415954	Y
+hsa-mir-199b	19157	3613.957569	Y
+hsa-mir-19a	63	11.884916	N
+hsa-mir-19b-1	225	42.446127	N
+hsa-mir-19b-2	161	30.372562	N
+hsa-mir-200a	6399	1207.167849	N
+hsa-mir-200b	4147	782.329281	N
+hsa-mir-200c	36650	6914.002449	N
+hsa-mir-202	12	2.263793	N
+hsa-mir-203a	17897	3376.259259	N
+hsa-mir-203b	124	23.392532	N
+hsa-mir-204	14	2.641092	N
+hsa-mir-205	5931	1118.879905	N
+hsa-mir-2052	0	0.000000	N
+hsa-mir-2053	0	0.000000	N
+hsa-mir-2054	0	0.000000	N
+hsa-mir-206	4	0.754598	N
+hsa-mir-208a	0	0.000000	N
+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	1027	193.742988	N
+hsa-mir-20b	67	12.639513	N
+hsa-mir-21	2110573	398158.441771	N
+hsa-mir-210	385	72.630039	N
+hsa-mir-211	0	0.000000	N
+hsa-mir-2110	1	0.188649	N
+hsa-mir-2113	0	0.000000	N
+hsa-mir-2114	5	0.943247	N
+hsa-mir-2115	2	0.377299	N
+hsa-mir-2116	0	0.000000	N
+hsa-mir-2117	0	0.000000	N
+hsa-mir-212	20	3.772989	N
+hsa-mir-214	114	21.506038	N
+hsa-mir-215	32	6.036782	Y
+hsa-mir-216a	6	1.131897	N
+hsa-mir-216b	0	0.000000	N
+hsa-mir-217	104	19.619543	N
+hsa-mir-218-1	99	18.676296	N
+hsa-mir-218-2	86	16.223853	N
+hsa-mir-219a-1	4	0.754598	N
+hsa-mir-219a-2	6	1.131897	N
+hsa-mir-219b	1	0.188649	N
+hsa-mir-22	411367	77604.159494	N
+hsa-mir-221	598	112.812373	N
+hsa-mir-222	123	23.203883	N
+hsa-mir-223	578	109.039384	N
+hsa-mir-224	75	14.148709	N
+hsa-mir-2276	0	0.000000	N
+hsa-mir-2277	3	0.565948	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	155	29.240665	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	8465	1596.917619	Y
+hsa-mir-23b	1570	296.179641	Y
+hsa-mir-23c	0	0.000000	N
+hsa-mir-24-1	1654	312.026195	N
+hsa-mir-24-2	1632	307.875907	N
+hsa-mir-2467	0	0.000000	N
+hsa-mir-25	37855	7141.325040	N
+hsa-mir-2681	0	0.000000	N
+hsa-mir-2682	0	0.000000	N
+hsa-mir-26a-1	8927	1684.073666	N
+hsa-mir-26a-2	9068	1710.673239	N
+hsa-mir-26b	2471	466.152798	N
+hsa-mir-27a	4522	853.072826	Y
+hsa-mir-27b	2254	425.215867	Y
+hsa-mir-28	16200	3056.121137	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	6	1.131897	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	10	1.886495	N
+hsa-mir-29a	37476	7069.826897	N
+hsa-mir-29b-1	1679	316.742431	Y
+hsa-mir-29b-2	1800	339.569015	Y
+hsa-mir-29c	31295	5903.784629	Y
+hsa-mir-300	0	0.000000	N
+hsa-mir-301a	23	4.338937	N
+hsa-mir-301b	3	0.565948	N
+hsa-mir-302a	0	0.000000	N
+hsa-mir-302b	0	0.000000	N
+hsa-mir-302c	0	0.000000	N
+hsa-mir-302d	0	0.000000	N
+hsa-mir-302e	0	0.000000	N
+hsa-mir-302f	0	0.000000	N
+hsa-mir-3064	0	0.000000	N
+hsa-mir-3065	69	13.016812	N
+hsa-mir-3074	29	5.470834	N
+hsa-mir-30a	311189	58705.634601	Y
+hsa-mir-30b	1651	311.460247	Y
+hsa-mir-30c-1	1036	195.440833	Y
+hsa-mir-30c-2	1356	255.808658	Y
+hsa-mir-30d	37546	7083.032359	N
+hsa-mir-30e	68812	12981.346153	Y
+hsa-mir-31	4	0.754598	N
+hsa-mir-3115	0	0.000000	N
+hsa-mir-3116-1	1	0.188649	N
+hsa-mir-3116-2	1	0.188649	N
+hsa-mir-3117	4	0.754598	N
+hsa-mir-3118-1	0	0.000000	N
+hsa-mir-3118-2	0	0.000000	N
+hsa-mir-3118-3	0	0.000000	N
+hsa-mir-3118-4	0	0.000000	N
+hsa-mir-3119-1	0	0.000000	N
+hsa-mir-3119-2	0	0.000000	N
+hsa-mir-3120	0	0.000000	N
+hsa-mir-3121	0	0.000000	N
+hsa-mir-3122	0	0.000000	N
+hsa-mir-3123	0	0.000000	N
+hsa-mir-3124	1	0.188649	N
+hsa-mir-3125	0	0.000000	N
+hsa-mir-3126	0	0.000000	N
+hsa-mir-3127	14	2.641092	N
+hsa-mir-3128	0	0.000000	N
+hsa-mir-3129	0	0.000000	N
+hsa-mir-3130-1	9	1.697845	N
+hsa-mir-3130-2	15	2.829742	N
+hsa-mir-3131	0	0.000000	N
+hsa-mir-3132	0	0.000000	N
+hsa-mir-3133	0	0.000000	N
+hsa-mir-3134	0	0.000000	N
+hsa-mir-3135a	0	0.000000	N
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+hsa-mir-3140	2	0.377299	N
+hsa-mir-3141	0	0.000000	N
+hsa-mir-3142	0	0.000000	N
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+hsa-mir-3147	0	0.000000	N
+hsa-mir-3148	0	0.000000	N
+hsa-mir-3149	0	0.000000	N
+hsa-mir-3150a	0	0.000000	N
+hsa-mir-3150b	2	0.377299	N
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+hsa-mir-3153	0	0.000000	N
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+hsa-mir-3156-3	0	0.000000	N
+hsa-mir-3157	3	0.565948	N
+hsa-mir-3158-1	0	0.000000	N
+hsa-mir-3158-2	1	0.188649	N
+hsa-mir-3159	1	0.188649	N
+hsa-mir-3160-1	0	0.000000	N
+hsa-mir-3160-2	1	0.188649	N
+hsa-mir-3161	0	0.000000	N
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+hsa-mir-3171	0	0.000000	N
+hsa-mir-3173	0	0.000000	N
+hsa-mir-3174	1	0.188649	N
+hsa-mir-3175	0	0.000000	N
+hsa-mir-3176	1	0.188649	N
+hsa-mir-3177	1	0.188649	N
+hsa-mir-3178	2	0.377299	N
+hsa-mir-3179-1	0	0.000000	N
+hsa-mir-3179-2	0	0.000000	N
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+hsa-mir-3179-4	0	0.000000	N
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+hsa-mir-3194	1	0.188649	N
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+hsa-mir-3199-2	6	1.131897	N
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+hsa-mir-3202-2	0	0.000000	N
+hsa-mir-320a	1378	259.958946	Y
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+hsa-mir-330	80	15.091956	N
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+hsa-mir-338	6671	1258.480500	N
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+hsa-mir-3617	0	0.000000	N
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+hsa-mir-3622a	1	0.188649	N
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+hsa-mir-3679	0	0.000000	N
+hsa-mir-3680-1	1	0.188649	N
+hsa-mir-3680-2	0	0.000000	N
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+hsa-mir-3682	3	0.565948	N
+hsa-mir-3683	0	0.000000	N
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+hsa-mir-3690-2	0	0.000000	N
+hsa-mir-3691	1	0.188649	N
+hsa-mir-3692	0	0.000000	N
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+hsa-mir-3714	0	0.000000	N
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+hsa-mir-371b	0	0.000000	N
+hsa-mir-372	2	0.377299	N
+hsa-mir-373	0	0.000000	N
+hsa-mir-374a	3062	577.644625	N
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+hsa-mir-375	164573	31046.606413	N
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+hsa-mir-376a-2	2	0.377299	N
+hsa-mir-376b	2	0.377299	N
+hsa-mir-376c	8	1.509196	N
+hsa-mir-377	13	2.452443	N
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+hsa-mir-378c	23	4.338937	N
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+hsa-mir-378d-2	1	0.188649	N
+hsa-mir-378e	0	0.000000	N
+hsa-mir-378f	0	0.000000	N
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+hsa-mir-378i	0	0.000000	N
+hsa-mir-378j	0	0.000000	N
+hsa-mir-379	3600	679.138030	N
+hsa-mir-380	5	0.943247	N
+hsa-mir-381	139	26.222274	N
+hsa-mir-382	84	15.846554	N
+hsa-mir-383	8	1.509196	N
+hsa-mir-384	0	0.000000	N
+hsa-mir-3907	0	0.000000	N
+hsa-mir-3908	0	0.000000	N
+hsa-mir-3909	4	0.754598	N
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+hsa-mir-3910-2	0	0.000000	N
+hsa-mir-3911	0	0.000000	N
+hsa-mir-3912	8	1.509196	N
+hsa-mir-3913-1	12	2.263793	N
+hsa-mir-3913-2	20	3.772989	N
+hsa-mir-3914-1	1	0.188649	N
+hsa-mir-3914-2	1	0.188649	N
+hsa-mir-3915	0	0.000000	N
+hsa-mir-3916	0	0.000000	N
+hsa-mir-3917	6	1.131897	N
+hsa-mir-3918	0	0.000000	N
+hsa-mir-3919	1	0.188649	N
+hsa-mir-3920	1	0.188649	N
+hsa-mir-3921	0	0.000000	N
+hsa-mir-3922	0	0.000000	N
+hsa-mir-3923	0	0.000000	N
+hsa-mir-3924	0	0.000000	N
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+hsa-mir-4798	0	0.000000	N
+hsa-mir-4799	0	0.000000	N
+hsa-mir-4800	3	0.565948	N
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+hsa-mir-4803	0	0.000000	N
+hsa-mir-4804	0	0.000000	N
+hsa-mir-483	25	4.716236	N
+hsa-mir-484	143	26.976872	N
+hsa-mir-485	8	1.509196	N
+hsa-mir-486-1	56	10.564369	N
+hsa-mir-486-2	51	9.621122	N
+hsa-mir-487a	3	0.565948	N
+hsa-mir-487b	11	2.075144	N
+hsa-mir-488	3	0.565948	N
+hsa-mir-489	6	1.131897	N
+hsa-mir-490	0	0.000000	N
+hsa-mir-491	11	2.075144	N
+hsa-mir-492	0	0.000000	N
+hsa-mir-493	30	5.659484	N
+hsa-mir-494	0	0.000000	N
+hsa-mir-495	15	2.829742	N
+hsa-mir-496	3	0.565948	N
+hsa-mir-497	98	18.487646	N
+hsa-mir-498	0	0.000000	N
+hsa-mir-4999	6	1.131897	N
+hsa-mir-499a	4	0.754598	N
+hsa-mir-499b	0	0.000000	N
+hsa-mir-5000	6	1.131897	N
+hsa-mir-5001	4	0.754598	N
+hsa-mir-5002	0	0.000000	N
+hsa-mir-5003	1	0.188649	N
+hsa-mir-5004	0	0.000000	N
+hsa-mir-5006	1	0.188649	N
+hsa-mir-5007	0	0.000000	N
+hsa-mir-5008	0	0.000000	N
+hsa-mir-5009	0	0.000000	N
+hsa-mir-500a	493	93.004180	Y
+hsa-mir-500b	11	2.075144	Y
+hsa-mir-501	62	11.696266	N
+hsa-mir-5010	2	0.377299	N
+hsa-mir-5011	0	0.000000	N
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+hsa-mir-503	20	3.772989	N
+hsa-mir-504	5	0.943247	N
+hsa-mir-5047	0	0.000000	N
+hsa-mir-505	39	7.357329	N
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+hsa-mir-507	0	0.000000	N
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+hsa-mir-5087	0	0.000000	N
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+hsa-mir-5089	3	0.565948	N
+hsa-mir-509-1	0	0.000000	N
+hsa-mir-509-2	2	0.377299	N
+hsa-mir-509-3	1	0.188649	N
+hsa-mir-5090	1	0.188649	N
+hsa-mir-5091	4	0.754598	N
+hsa-mir-5092	2	0.377299	N
+hsa-mir-5093	0	0.000000	N
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+hsa-mir-513c	0	0.000000	N
+hsa-mir-514a-1	3	0.565948	N
+hsa-mir-514a-2	2	0.377299	N
+hsa-mir-514a-3	3	0.565948	N
+hsa-mir-514b	0	0.000000	N
+hsa-mir-515-1	1	0.188649	N
+hsa-mir-515-2	0	0.000000	N
+hsa-mir-516a-1	2	0.377299	N
+hsa-mir-516a-2	1	0.188649	N
+hsa-mir-516b-1	0	0.000000	N
+hsa-mir-516b-2	0	0.000000	N
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+hsa-mir-5189	0	0.000000	N
+hsa-mir-518a-1	0	0.000000	N
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+hsa-mir-518f	0	0.000000	N
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+hsa-mir-520b	0	0.000000	N
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+hsa-mir-520e	0	0.000000	N
+hsa-mir-520f	0	0.000000	N
+hsa-mir-520g	2	0.377299	Y
+hsa-mir-520h	2	0.377299	Y
+hsa-mir-521-1	0	0.000000	N
+hsa-mir-521-2	0	0.000000	N
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+hsa-mir-527	0	0.000000	N
+hsa-mir-532	2385	449.928945	N
+hsa-mir-539	15	2.829742	N
+hsa-mir-541	3	0.565948	N
+hsa-mir-542	1639	309.196453	N
+hsa-mir-543	5	0.943247	N
+hsa-mir-544a	0	0.000000	N
+hsa-mir-544b	0	0.000000	N
+hsa-mir-545	3	0.565948	N
+hsa-mir-548a-1	0	0.000000	N
+hsa-mir-548a-2	0	0.000000	N
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+hsa-mir-548ae-2	0	0.000000	N
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+hsa-mir-548ai	0	0.000000	N
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+hsa-mir-548ap	0	0.000000	N
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+hsa-mir-548ar	0	0.000000	N
+hsa-mir-548as	0	0.000000	N
+hsa-mir-548at	0	0.000000	N
+hsa-mir-548au	1	0.188649	N
+hsa-mir-548av	0	0.000000	N
+hsa-mir-548aw	0	0.000000	N
+hsa-mir-548ax	0	0.000000	N
+hsa-mir-548ay	0	0.000000	N
+hsa-mir-548az	0	0.000000	N
+hsa-mir-548b	0	0.000000	N
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+hsa-mir-548bb	0	0.000000	N
+hsa-mir-548c	0	0.000000	N
+hsa-mir-548d-1	0	0.000000	N
+hsa-mir-548d-2	0	0.000000	N
+hsa-mir-548e	2	0.377299	N
+hsa-mir-548f-1	1	0.188649	N
+hsa-mir-548f-2	0	0.000000	N
+hsa-mir-548f-3	0	0.000000	N
+hsa-mir-548f-4	0	0.000000	N
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+hsa-mir-548h-3	0	0.000000	N
+hsa-mir-548h-4	0	0.000000	N
+hsa-mir-548h-5	0	0.000000	N
+hsa-mir-548i-1	0	0.000000	N
+hsa-mir-548i-2	0	0.000000	N
+hsa-mir-548i-3	0	0.000000	N
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+hsa-mir-548j	2	0.377299	N
+hsa-mir-548k	0	0.000000	N
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+hsa-mir-548m	0	0.000000	N
+hsa-mir-548n	0	0.000000	N
+hsa-mir-548o	3	0.565948	N
+hsa-mir-548o-2	1	0.188649	N
+hsa-mir-548p	0	0.000000	N
+hsa-mir-548q	0	0.000000	N
+hsa-mir-548s	1	0.188649	N
+hsa-mir-548t	1	0.188649	N
+hsa-mir-548u	0	0.000000	N
+hsa-mir-548v	0	0.000000	N
+hsa-mir-548w	0	0.000000	N
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+hsa-mir-548x-2	0	0.000000	N
+hsa-mir-548y	0	0.000000	N
+hsa-mir-548z	0	0.000000	N
+hsa-mir-549a	0	0.000000	N
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+hsa-mir-550a-2	2	0.377299	N
+hsa-mir-550a-3	1	0.188649	N
+hsa-mir-550b-1	0	0.000000	N
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+hsa-mir-552	0	0.000000	N
+hsa-mir-553	0	0.000000	N
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+hsa-mir-557	0	0.000000	N
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+hsa-mir-5572	0	0.000000	N
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+hsa-mir-558	0	0.000000	N
+hsa-mir-5580	0	0.000000	N
+hsa-mir-5581	1	0.188649	N
+hsa-mir-5582	1	0.188649	N
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+hsa-mir-5583-2	0	0.000000	N
+hsa-mir-5584	0	0.000000	N
+hsa-mir-5585	0	0.000000	N
+hsa-mir-5586	23	4.338937	N
+hsa-mir-5587	0	0.000000	N
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+hsa-mir-559	0	0.000000	N
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+hsa-mir-5681a	1	0.188649	N
+hsa-mir-5681b	0	0.000000	N
+hsa-mir-5682	0	0.000000	N
+hsa-mir-5683	20	3.772989	N
+hsa-mir-5684	6	1.131897	N
+hsa-mir-5685	2	0.377299	N
+hsa-mir-5687	1	0.188649	N
+hsa-mir-5688	0	0.000000	N
+hsa-mir-5689	0	0.000000	N
+hsa-mir-569	0	0.000000	N
+hsa-mir-5690	0	0.000000	N
+hsa-mir-5691	8	1.509196	N
+hsa-mir-5692a-1	0	0.000000	N
+hsa-mir-5692a-2	0	0.000000	N
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+hsa-mir-5695	2	0.377299	N
+hsa-mir-5696	0	0.000000	N
+hsa-mir-5697	0	0.000000	N
+hsa-mir-5698	0	0.000000	N
+hsa-mir-5699	2	0.377299	N
+hsa-mir-570	1	0.188649	N
+hsa-mir-5700	0	0.000000	N
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+hsa-mir-5703	2	0.377299	N
+hsa-mir-5704	0	0.000000	N
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+hsa-mir-599	1	0.188649	N
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+hsa-mir-602	0	0.000000	N
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+hsa-mir-616	3	0.565948	N
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+hsa-mir-619	0	0.000000	N
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+hsa-mir-624	3	0.565948	N
+hsa-mir-625	411	77.534925	N
+hsa-mir-626	0	0.000000	N
+hsa-mir-627	1	0.188649	N
+hsa-mir-628	42	7.923277	N
+hsa-mir-629	307	57.915382	N
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+hsa-mir-631	0	0.000000	N
+hsa-mir-632	1	0.188649	N
+hsa-mir-633	0	0.000000	N
+hsa-mir-634	0	0.000000	N
+hsa-mir-635	0	0.000000	N
+hsa-mir-636	0	0.000000	N
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+hsa-mir-638	0	0.000000	N
+hsa-mir-639	4	0.754598	N
+hsa-mir-640	0	0.000000	N
+hsa-mir-641	1	0.188649	N
+hsa-mir-642a	5	0.943247	N
+hsa-mir-642b	0	0.000000	N
+hsa-mir-643	1	0.188649	N
+hsa-mir-644a	0	0.000000	N
+hsa-mir-645	0	0.000000	N
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+hsa-mir-6499	0	0.000000	N
+hsa-mir-650	0	0.000000	N
+hsa-mir-6500	0	0.000000	N
+hsa-mir-6501	1	0.188649	N
+hsa-mir-6502	4	0.754598	N
+hsa-mir-6503	0	0.000000	N
+hsa-mir-6504	0	0.000000	N
+hsa-mir-6505	0	0.000000	N
+hsa-mir-6506	1	0.188649	N
+hsa-mir-6507	0	0.000000	N
+hsa-mir-6508	0	0.000000	N
+hsa-mir-6509	3	0.565948	N
+hsa-mir-651	17	3.207041	N
+hsa-mir-6510	6	1.131897	N
+hsa-mir-6511a-1	0	0.000000	N
+hsa-mir-6511a-2	0	0.000000	N
+hsa-mir-6511a-3	0	0.000000	N
+hsa-mir-6511a-4	0	0.000000	N
+hsa-mir-6511b-1	0	0.000000	N
+hsa-mir-6511b-2	2	0.377299	N
+hsa-mir-6512	0	0.000000	N
+hsa-mir-6513	0	0.000000	N
+hsa-mir-6514	5	0.943247	N
+hsa-mir-6515	0	0.000000	N
+hsa-mir-6516	4	0.754598	N
+hsa-mir-652	143	26.976872	N
+hsa-mir-653	160	30.183912	N
+hsa-mir-654	32	6.036782	N
+hsa-mir-655	9	1.697845	N
+hsa-mir-656	5	0.943247	N
+hsa-mir-657	0	0.000000	N
+hsa-mir-658	0	0.000000	N
+hsa-mir-659	7	1.320546	N
+hsa-mir-660	236	44.521271	N
+hsa-mir-661	0	0.000000	N
+hsa-mir-662	0	0.000000	N
+hsa-mir-663a	0	0.000000	N
+hsa-mir-663b	0	0.000000	N
+hsa-mir-664a	122	23.015233	N
+hsa-mir-664b	7	1.320546	N
+hsa-mir-665	0	0.000000	N
+hsa-mir-668	1	0.188649	N
+hsa-mir-670	0	0.000000	N
+hsa-mir-671	26	4.904886	N
+hsa-mir-6715a	0	0.000000	N
+hsa-mir-6715b	1	0.188649	N
+hsa-mir-6716	4	0.754598	N
+hsa-mir-6717	0	0.000000	N
+hsa-mir-6718	2	0.377299	N
+hsa-mir-6719	0	0.000000	N
+hsa-mir-6720	2	0.377299	N
+hsa-mir-6721	0	0.000000	N
+hsa-mir-6722	0	0.000000	N
+hsa-mir-6723	0	0.000000	N
+hsa-mir-6724-1	0	0.000000	N
+hsa-mir-6724-2	0	0.000000	N
+hsa-mir-6724-3	0	0.000000	N
+hsa-mir-6724-4	0	0.000000	N
+hsa-mir-6726	0	0.000000	N
+hsa-mir-6727	0	0.000000	N
+hsa-mir-6728	0	0.000000	N
+hsa-mir-6729	0	0.000000	N
+hsa-mir-6730	0	0.000000	N
+hsa-mir-6731	0	0.000000	N
+hsa-mir-6732	0	0.000000	N
+hsa-mir-6733	4	0.754598	N
+hsa-mir-6734	0	0.000000	N
+hsa-mir-6735	0	0.000000	N
+hsa-mir-6736	0	0.000000	N
+hsa-mir-6737	1	0.188649	N
+hsa-mir-6738	0	0.000000	N
+hsa-mir-6739	0	0.000000	N
+hsa-mir-6740	0	0.000000	N
+hsa-mir-6741	0	0.000000	N
+hsa-mir-6742	0	0.000000	N
+hsa-mir-6743	0	0.000000	N
+hsa-mir-6744	0	0.000000	N
+hsa-mir-6745	0	0.000000	N
+hsa-mir-6746	1	0.188649	N
+hsa-mir-6747	0	0.000000	N
+hsa-mir-6748	1	0.188649	N
+hsa-mir-6749	0	0.000000	N
+hsa-mir-675	109	20.562790	N
+hsa-mir-6750	2	0.377299	N
+hsa-mir-6751	0	0.000000	N
+hsa-mir-6752	0	0.000000	N
+hsa-mir-6753	0	0.000000	N
+hsa-mir-6754	0	0.000000	N
+hsa-mir-6755	2	0.377299	N
+hsa-mir-6756	0	0.000000	N
+hsa-mir-6757	0	0.000000	N
+hsa-mir-6758	0	0.000000	N
+hsa-mir-6759	0	0.000000	N
+hsa-mir-676	4	0.754598	N
+hsa-mir-6760	0	0.000000	N
+hsa-mir-6761	2	0.377299	N
+hsa-mir-6762	0	0.000000	N
+hsa-mir-6763	0	0.000000	N
+hsa-mir-6764	0	0.000000	N
+hsa-mir-6765	0	0.000000	N
+hsa-mir-6766	0	0.000000	N
+hsa-mir-6767	0	0.000000	N
+hsa-mir-6768	0	0.000000	N
+hsa-mir-6769a	0	0.000000	N
+hsa-mir-6769b	0	0.000000	N
+hsa-mir-6770-1	0	0.000000	N
+hsa-mir-6770-2	0	0.000000	N
+hsa-mir-6770-3	0	0.000000	N
+hsa-mir-6771	0	0.000000	N
+hsa-mir-6772	0	0.000000	N
+hsa-mir-6773	0	0.000000	N
+hsa-mir-6774	0	0.000000	N
+hsa-mir-6775	0	0.000000	N
+hsa-mir-6776	0	0.000000	N
+hsa-mir-6777	1	0.188649	N
+hsa-mir-6778	0	0.000000	N
+hsa-mir-6779	0	0.000000	N
+hsa-mir-6780a	0	0.000000	N
+hsa-mir-6780b	0	0.000000	N
+hsa-mir-6781	1	0.188649	N
+hsa-mir-6782	0	0.000000	N
+hsa-mir-6783	0	0.000000	N
+hsa-mir-6784	1	0.188649	N
+hsa-mir-6785	0	0.000000	N
+hsa-mir-6786	0	0.000000	N
+hsa-mir-6787	0	0.000000	N
+hsa-mir-6788	0	0.000000	N
+hsa-mir-6789	0	0.000000	N
+hsa-mir-6790	0	0.000000	N
+hsa-mir-6791	1	0.188649	N
+hsa-mir-6792	0	0.000000	N
+hsa-mir-6793	0	0.000000	N
+hsa-mir-6794	0	0.000000	N
+hsa-mir-6795	0	0.000000	N
+hsa-mir-6796	0	0.000000	N
+hsa-mir-6797	0	0.000000	N
+hsa-mir-6798	0	0.000000	N
+hsa-mir-6799	0	0.000000	N
+hsa-mir-6800	0	0.000000	N
+hsa-mir-6801	0	0.000000	N
+hsa-mir-6802	0	0.000000	N
+hsa-mir-6803	1	0.188649	N
+hsa-mir-6804	0	0.000000	N
+hsa-mir-6805	0	0.000000	N
+hsa-mir-6806	3	0.565948	N
+hsa-mir-6807	1	0.188649	N
+hsa-mir-6808	3	0.565948	N
+hsa-mir-6809	0	0.000000	N
+hsa-mir-6810	0	0.000000	N
+hsa-mir-6811	0	0.000000	N
+hsa-mir-6812	0	0.000000	N
+hsa-mir-6813	0	0.000000	N
+hsa-mir-6814	0	0.000000	N
+hsa-mir-6815	1	0.188649	N
+hsa-mir-6816	0	0.000000	N
+hsa-mir-6817	0	0.000000	N
+hsa-mir-6818	0	0.000000	N
+hsa-mir-6819	0	0.000000	N
+hsa-mir-6820	2	0.377299	N
+hsa-mir-6821	0	0.000000	N
+hsa-mir-6822	0	0.000000	N
+hsa-mir-6823	0	0.000000	N
+hsa-mir-6824	0	0.000000	N
+hsa-mir-6825	0	0.000000	N
+hsa-mir-6826	0	0.000000	N
+hsa-mir-6827	0	0.000000	N
+hsa-mir-6828	0	0.000000	N
+hsa-mir-6829	0	0.000000	N
+hsa-mir-6830	0	0.000000	N
+hsa-mir-6831	0	0.000000	N
+hsa-mir-6832	0	0.000000	N
+hsa-mir-6833	0	0.000000	N
+hsa-mir-6834	0	0.000000	N
+hsa-mir-6835	0	0.000000	N
+hsa-mir-6836	0	0.000000	N
+hsa-mir-6837	0	0.000000	N
+hsa-mir-6838	0	0.000000	N
+hsa-mir-6839	0	0.000000	N
+hsa-mir-6840	0	0.000000	N
+hsa-mir-6841	0	0.000000	N
+hsa-mir-6842	7	1.320546	N
+hsa-mir-6843	0	0.000000	N
+hsa-mir-6844	0	0.000000	N
+hsa-mir-6845	0	0.000000	N
+hsa-mir-6846	0	0.000000	N
+hsa-mir-6847	0	0.000000	N
+hsa-mir-6848	0	0.000000	N
+hsa-mir-6849	0	0.000000	N
+hsa-mir-6850	0	0.000000	N
+hsa-mir-6851	0	0.000000	N
+hsa-mir-6852	1	0.188649	N
+hsa-mir-6853	0	0.000000	N
+hsa-mir-6854	4	0.754598	N
+hsa-mir-6855	0	0.000000	N
+hsa-mir-6856	0	0.000000	N
+hsa-mir-6857	0	0.000000	N
+hsa-mir-6858	0	0.000000	N
+hsa-mir-6859-1	0	0.000000	N
+hsa-mir-6859-2	0	0.000000	N
+hsa-mir-6859-3	0	0.000000	N
+hsa-mir-6859-4	0	0.000000	N
+hsa-mir-6860	1	0.188649	N
+hsa-mir-6861	0	0.000000	N
+hsa-mir-6862-1	0	0.000000	N
+hsa-mir-6862-2	0	0.000000	N
+hsa-mir-6863	0	0.000000	N
+hsa-mir-6864	0	0.000000	N
+hsa-mir-6865	0	0.000000	N
+hsa-mir-6866	0	0.000000	N
+hsa-mir-6867	0	0.000000	N
+hsa-mir-6868	2	0.377299	N
+hsa-mir-6869	1	0.188649	N
+hsa-mir-6870	0	0.000000	N
+hsa-mir-6871	0	0.000000	N
+hsa-mir-6872	0	0.000000	N
+hsa-mir-6873	0	0.000000	N
+hsa-mir-6874	3	0.565948	N
+hsa-mir-6875	0	0.000000	N
+hsa-mir-6876	0	0.000000	N
+hsa-mir-6877	0	0.000000	N
+hsa-mir-6878	0	0.000000	N
+hsa-mir-6879	0	0.000000	N
+hsa-mir-6880	0	0.000000	N
+hsa-mir-6881	0	0.000000	N
+hsa-mir-6882	1	0.188649	N
+hsa-mir-6883	0	0.000000	N
+hsa-mir-6884	0	0.000000	N
+hsa-mir-6885	0	0.000000	N
+hsa-mir-6886	0	0.000000	N
+hsa-mir-6887	0	0.000000	N
+hsa-mir-6888	0	0.000000	N
+hsa-mir-6889	0	0.000000	N
+hsa-mir-6890	0	0.000000	N
+hsa-mir-6891	0	0.000000	N
+hsa-mir-6892	8	1.509196	N
+hsa-mir-6893	0	0.000000	N
+hsa-mir-6894	0	0.000000	N
+hsa-mir-6895	0	0.000000	N
+hsa-mir-7-1	79	14.903307	N
+hsa-mir-7-2	0	0.000000	N
+hsa-mir-7-3	0	0.000000	N
+hsa-mir-708	380	71.686792	N
+hsa-mir-7106	0	0.000000	N
+hsa-mir-7107	0	0.000000	N
+hsa-mir-7108	0	0.000000	N
+hsa-mir-7109	0	0.000000	N
+hsa-mir-711	0	0.000000	N
+hsa-mir-7110	0	0.000000	N
+hsa-mir-7111	0	0.000000	N
+hsa-mir-7112	0	0.000000	N
+hsa-mir-7113	0	0.000000	N
+hsa-mir-7114	0	0.000000	N
+hsa-mir-7150	0	0.000000	N
+hsa-mir-7151	0	0.000000	N
+hsa-mir-7152	1	0.188649	N
+hsa-mir-7153	0	0.000000	N
+hsa-mir-7154	0	0.000000	N
+hsa-mir-7155	0	0.000000	N
+hsa-mir-7156	2	0.377299	N
+hsa-mir-7157	0	0.000000	N
+hsa-mir-7158	0	0.000000	N
+hsa-mir-7159	0	0.000000	N
+hsa-mir-7160	0	0.000000	N
+hsa-mir-7161	0	0.000000	N
+hsa-mir-7162	0	0.000000	N
+hsa-mir-718	0	0.000000	N
+hsa-mir-744	102	19.242244	N
+hsa-mir-7515	0	0.000000	N
+hsa-mir-758	73	13.771410	N
+hsa-mir-759	0	0.000000	N
+hsa-mir-760	8	1.509196	N
+hsa-mir-761	0	0.000000	N
+hsa-mir-762	0	0.000000	N
+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	0	0.000000	N
+hsa-mir-766	21	3.961639	N
+hsa-mir-767	0	0.000000	N
+hsa-mir-769	55	10.375720	N
+hsa-mir-770	0	0.000000	N
+hsa-mir-7702	1	0.188649	N
+hsa-mir-7703	0	0.000000	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	7	1.320546	N
+hsa-mir-7706	3	0.565948	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	3	0.565948	N
+hsa-mir-7845	0	0.000000	N
+hsa-mir-7846	1	0.188649	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	2	0.377299	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	0	0.000000	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	0	0.000000	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
+hsa-mir-8053	0	0.000000	N
+hsa-mir-8054	0	0.000000	N
+hsa-mir-8055	0	0.000000	N
+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
+hsa-mir-8061	0	0.000000	N
+hsa-mir-8062	0	0.000000	N
+hsa-mir-8063	0	0.000000	N
+hsa-mir-8064	0	0.000000	N
+hsa-mir-8065	0	0.000000	N
+hsa-mir-8066	0	0.000000	N
+hsa-mir-8067	0	0.000000	N
+hsa-mir-8068	0	0.000000	N
+hsa-mir-8069-1	0	0.000000	N
+hsa-mir-8069-2	0	0.000000	N
+hsa-mir-8070	0	0.000000	N
+hsa-mir-8071-1	0	0.000000	N
+hsa-mir-8071-2	0	0.000000	N
+hsa-mir-8072	0	0.000000	N
+hsa-mir-8073	0	0.000000	N
+hsa-mir-8074	0	0.000000	N
+hsa-mir-8075	0	0.000000	N
+hsa-mir-8076	0	0.000000	N
+hsa-mir-8077	0	0.000000	N
+hsa-mir-8078	0	0.000000	N
+hsa-mir-8079	0	0.000000	N
+hsa-mir-8080	0	0.000000	N
+hsa-mir-8081	0	0.000000	N
+hsa-mir-8082	0	0.000000	N
+hsa-mir-8083	0	0.000000	N
+hsa-mir-8084	0	0.000000	N
+hsa-mir-8085	0	0.000000	N
+hsa-mir-8086	0	0.000000	N
+hsa-mir-8087	0	0.000000	N
+hsa-mir-8088	0	0.000000	N
+hsa-mir-8089	0	0.000000	N
+hsa-mir-8485	0	0.000000	N
+hsa-mir-873	2	0.377299	N
+hsa-mir-874	105	19.808193	N
+hsa-mir-875	0	0.000000	N
+hsa-mir-876	0	0.000000	N
+hsa-mir-877	0	0.000000	N
+hsa-mir-885	1	0.188649	N
+hsa-mir-887	44	8.300576	N
+hsa-mir-888	0	0.000000	N
+hsa-mir-889	73	13.771410	N
+hsa-mir-890	0	0.000000	N
+hsa-mir-891a	4	0.754598	N
+hsa-mir-891b	0	0.000000	N
+hsa-mir-892a	1	0.188649	N
+hsa-mir-892b	0	0.000000	N
+hsa-mir-892c	0	0.000000	N
+hsa-mir-9-1	618	116.585362	N
+hsa-mir-9-2	625	117.905908	N
+hsa-mir-9-3	631	119.037805	N
+hsa-mir-920	0	0.000000	N
+hsa-mir-921	0	0.000000	N
+hsa-mir-922	0	0.000000	N
+hsa-mir-924	0	0.000000	N
+hsa-mir-92a-1	11571	2182.862820	N
+hsa-mir-92a-2	10519	1984.403595	N
+hsa-mir-92b	260	49.048858	N
+hsa-mir-93	15240	2875.017662	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	0	0.000000	N
+hsa-mir-935	1	0.188649	N
+hsa-mir-936	0	0.000000	N
+hsa-mir-937	6	1.131897	N
+hsa-mir-938	0	0.000000	N
+hsa-mir-939	3	0.565948	N
+hsa-mir-940	10	1.886495	N
+hsa-mir-941-1	0	0.000000	N
+hsa-mir-941-2	0	0.000000	N
+hsa-mir-941-3	0	0.000000	N
+hsa-mir-941-4	0	0.000000	N
+hsa-mir-941-5	0	0.000000	N
+hsa-mir-942	15	2.829742	N
+hsa-mir-943	0	0.000000	N
+hsa-mir-944	3	0.565948	N
+hsa-mir-95	12	2.263793	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	48	9.055174	N
+hsa-mir-98	161	30.372562	N
+hsa-mir-99a	7764	1464.674352	N
+hsa-mir-99b	93720	17680.226726	N

data/gdc_data_organized/8f9ad301-6699-4078-a80d-886e40894af7/TCGA-BRCA.bcc81b67-ecd6-442f-abc4-dd5b916bea85.ascat2.allelic_specific.seg.txt

@@ -0,0 +1,174 @@
+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	62920	15108761	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	15112494	15223062	2	2	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	15224029	15249609	4	2	2
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	15251699	15581487	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	15581908	15627934	3	2	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	15632869	41520395	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	41522963	62025882	1	1	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	62026382	62044500	0	0	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	62044785	65356834	1	1	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	65360162	65505117	0	0	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	65506407	97079773	1	1	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	97080148	97691735	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	97695695	105645353	1	1	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	105655140	115540453	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	115542385	116140098	2	2	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	116141035	121705338	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	143541857	237864045	3	2	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	237865429	237874950	8	4	4
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	237875140	242261568	3	2	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	242261883	242511080	3	3	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr1	242511430	248930189	3	2	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	12784	165633	2	2	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	165674	88833611	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	88834118	89118119	7	7	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	89119438	198809927	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	198811352	200397726	1	1	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	200402938	218132857	2	1	1
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	218137791	219184568	2	2	0
+bcc81b67-ecd6-442f-abc4-dd5b916bea85	chr2	219184665	242147305	2	1	1
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data/gdc_data_organized/9087585f-e792-4f33-baaa-56ffe0f745be/DEVEL_p_TCGAb3_73_74_75_76_NSP_GenomeWideSNP_6_B01_1438364.grch38.seg.v2.txt

@@ -0,0 +1,754 @@
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data/gdc_data_organized/9087585f-e792-4f33-baaa-56ffe0f745be/DEVEL_p_TCGAb3_73_74_75_76_NSP_GenomeWideSNP_6_B01_1438364.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,342 @@
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data/gdc_data_organized/9087585f-e792-4f33-baaa-56ffe0f745be/HEIGH_p_TCGAb418_19_21_BCR_NSP_GenomeWideSNP_6_G02_1485642.grch38.seg.v2.txt

@@ -0,0 +1,444 @@
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