Auto-upload batch data to clear storage

.gitattributes

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data/__notebook__.ipynb

@@ -2313,6 +2313,2525 @@
      },
      "metadata": {},
      "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "-> Upload thành công!\n",
+      "-> Đang xóa dữ liệu local để giải phóng bộ nhớ...\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "-> Đã làm trống thư mục. Dung lượng hiện tại: 0.00 GB\n",
+      "--------------------------------------------------\n",
+      "[279/10000] (15.64GB) Downloading: 28f1b708-bd3c-4ae7-935f-3282f75304a7.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[280/10000] (0.00GB) Downloading: nationwidechildrens.org_clinical.TCGA-AN-A0FD.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[281/10000] (0.00GB) Downloading: TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.svs (751.59 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[282/10000] (0.74GB) Downloading: TCGA-BRCA.c50f9ab3-c448-4289-b6b1-36ddcbd9efb9.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[283/10000] (0.74GB) Downloading: 88c8a133-1c35-4e23-88d3-042cbca01208_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[284/10000] (0.75GB) Downloading: 2c1b1cbb-6e9f-4416-8faa-abb31d6b4e0e.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[285/10000] (0.75GB) Downloading: TCGA-BRCA.2e5d28ee-b288-466f-9d14-0ed674e0c6b0.ascat2.allelic_specific.seg.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[286/10000] (0.75GB) Downloading: TCGA-D8-A1JP-01A-01-TSA.17850ecb-c049-47fa-8b12-63bc8815e520.svs (162.23 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[287/10000] (0.91GB) Downloading: 88c8a133-1c35-4e23-88d3-042cbca01208_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[288/10000] (0.92GB) Downloading: 4087cbb6-eeb6-43d7-80ae-106585472f15_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[289/10000] (0.93GB) Downloading: TCGA-BRCA.c50f9ab3-c448-4289-b6b1-36ddcbd9efb9.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[290/10000] (0.93GB) Downloading: GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C09_777996.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[291/10000] (0.93GB) Downloading: TCGA-BRCA.2e5d28ee-b288-466f-9d14-0ed674e0c6b0.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[292/10000] (0.93GB) Downloading: TCGA-D8-A1JP-01A-21-A17J-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[293/10000] (0.93GB) Downloading: TCGA-BRCA.c50f9ab3-c448-4289-b6b1-36ddcbd9efb9.ascat2.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[294/10000] (0.93GB) Downloading: TCGA-BRCA.2e5d28ee-b288-466f-9d14-0ed674e0c6b0.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[295/10000] (0.94GB) Downloading: TCGA-BRCA.1dd196c1-6198-4edf-b8a1-66fed90a68b3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[296/10000] (0.94GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-D8-A1XL.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[297/10000] (0.94GB) Downloading: nationwidechildrens.org_clinical.TCGA-A1-A0SN.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[298/10000] (0.94GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[299/10000] (0.94GB) Downloading: BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C07_780950.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[300/10000] (0.94GB) Downloading: TCGA-BRCA.ec4242c5-4c16-43d6-9fe3-0fc2766928a1.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[301/10000] (0.94GB) Downloading: 3e4eb595-9c45-4f67-8c00-8fdcf9090e1c_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[302/10000] (0.95GB) Downloading: 74e4c12c-cacd-4bb3-bbe1-6edec664ddb9_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[303/10000] (0.96GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[304/10000] (0.96GB) Downloading: TCGA-S3-AA11-01A-03-TS3.8C92F642-024A-482C-A5D0-A49910FE31C6.svs (332.19 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[305/10000] (1.28GB) Downloading: TCGA-BRCA.0a50d096-f517-485c-9b61-5ab097ce7d8d.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[306/10000] (1.29GB) Downloading: TCGA-BRCA.82bfe88a-541f-4187-be75-b05bec1ce60c.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[307/10000] (1.29GB) Downloading: TCGA-BRCA.0a50d096-f517-485c-9b61-5ab097ce7d8d.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[308/10000] (1.29GB) Downloading: 9da89066-8d82-4ace-80e1-889d3c73c8eb.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[309/10000] (1.29GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_A09_1513184.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[310/10000] (1.29GB) Downloading: TCGA-S3-AA11-01A-31D-A89F-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[311/10000] (1.29GB) Downloading: TCGA-B6-A1KI-01A-01-TS1.9e114169-5c22-4ec6-a85f-327bd0b51570.svs (155.54 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[312/10000] (1.44GB) Downloading: 3e4eb595-9c45-4f67-8c00-8fdcf9090e1c_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[313/10000] (1.45GB) Downloading: 9d4bb505-560b-4726-8101-7bf8206a8a24.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[314/10000] (1.45GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_A10_1513252.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[315/10000] (1.45GB) Downloading: TCGA-B6-A1KI-01Z-00-DX1.EFAA08A8-02EC-4A9B-AC6B-79BF2DC5A2AA.svs (978.63 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[316/10000] (2.41GB) Downloading: nationwidechildrens.org_clinical.TCGA-B6-A1KI.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[317/10000] (2.41GB) Downloading: TCGA-BRCA.82bfe88a-541f-4187-be75-b05bec1ce60c.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[318/10000] (2.41GB) Downloading: b8627c39-407d-4e6e-b102-d942fa70fdd5_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[319/10000] (2.42GB) Downloading: BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C05_780912.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[320/10000] (2.42GB) Downloading: f4cafe8e-81db-4c7e-aae4-765c52de2051.mirbase21.isoforms.quantification.txt (0.31 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[321/10000] (2.42GB) Downloading: BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A04_780938.grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[322/10000] (2.42GB) Downloading: c9b9ed6a-ff3e-4f10-bd30-2b746dc43404.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[323/10000] (2.42GB) Downloading: TCGA-AO-A03O-01A-31-A13A-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[324/10000] (2.42GB) Downloading: TCGA-BRCA.690c778d-bca2-48c6-b084-3445f58cf216.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[325/10000] (2.42GB) Downloading: TCGA-BH-A0EI-01Z-00-DX1.929E126A-C9F8-4240-BF00-B6C4A57B7FF6.svs (834.57 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[326/10000] (3.23GB) Downloading: a98217af-f6e7-4770-8912-2988ae2a84cd_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[327/10000] (3.23GB) Downloading: TCGA-BH-A0W5-01A-01-BSA.f3d54f51-a213-4c52-8eeb-1220f24364e4.svs (392.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[328/10000] (3.62GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[329/10000] (3.62GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[330/10000] (3.62GB) Downloading: 6554f195-2070-4af3-98f9-c4d8529e5635.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[331/10000] (3.62GB) Downloading: d1371288-4cf3-4d3a-9442-fd9966d32e81.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[332/10000] (3.62GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H05_667072.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[333/10000] (3.62GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[334/10000] (3.62GB) Downloading: TCGA-B6-A0IP.6C91D49C-9738-4A4F-A480-E71CD8EE5268.PDF (0.16 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[335/10000] (3.62GB) Downloading: ef57b156-a03d-4d91-a7d7-c88f9142e037.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[336/10000] (3.62GB) Downloading: TCGA-B6-A0IP-01A-01-BSA.a052ef3d-7640-4a8a-8060-5f88d7ce9e94.svs (370.86 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[337/10000] (3.98GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[338/10000] (3.98GB) Downloading: nationwidechildrens.org_ssf.TCGA-BH-A0EI.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[339/10000] (3.98GB) Downloading: TCGA-BH-A0EI.DFB21194-30C7-430E-A53C-C38345209B1F.PDF (0.10 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[340/10000] (3.98GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[341/10000] (3.98GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[342/10000] (3.98GB) Downloading: TCGA-BRCA.c2056ecb-78f2-4bc7-8954-030007e428dc.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[343/10000] (3.98GB) Downloading: c530a730-ab95-4b97-9cbd-dc7249e087c7.mirbase21.isoforms.quantification.txt (0.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[344/10000] (3.98GB) Downloading: TCGA-BRCA.12dff233-d164-4560-8045-1712fd973416.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[345/10000] (3.98GB) Downloading: TCGA-BRCA.a12ef456-3010-4ec9-a428-0259be208606.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[346/10000] (3.99GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.nocnv_grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[347/10000] (3.99GB) Downloading: b147ced3-245c-400e-83e1-5396cc0fd411.wgs.ASCAT.gene_level.copy_number_variation.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[348/10000] (3.99GB) Downloading: nationwidechildrens.org_ssf.TCGA-B6-A0IP.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[349/10000] (3.99GB) Downloading: bbf9988a-7181-4388-b39d-c4327051fed9.methylation_array.sesame.level3betas.txt (12.34 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[350/10000] (4.00GB) Downloading: fb49b14e-d40f-4270-98b3-458ce60f2cde.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[351/10000] (4.01GB) Downloading: ed8a8dd4-205f-4415-9c3b-cd03cba9a302_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[352/10000] (4.01GB) Downloading: TCGA-BH-A0W5.60F59595-928B-43BB-978F-9E5B48539EFA.PDF (0.10 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[353/10000] (4.01GB) Downloading: TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976.svs (2029.14 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[354/10000] (5.99GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[355/10000] (5.99GB) Downloading: 538383ae-c722-44ae-bb58-28a0fd9bb88f.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[356/10000] (5.99GB) Downloading: TCGA-A1-A0SB-01Z-00-DX1.B34C267B-CAAA-4AB6-AD5C-276C26F997A1.svs (706.85 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[357/10000] (6.68GB) Downloading: TCGA-BRCA.a12ef456-3010-4ec9-a428-0259be208606.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[358/10000] (6.68GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[359/10000] (6.68GB) Downloading: TCGA-B6-A0IM-01A-01-TSA.b038a0c6-b657-47f0-99b7-475c9596c4b6.svs (402.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[360/10000] (7.08GB) Downloading: 4fbe4ee1-7efd-4ba4-8116-5ab3b4666b48.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[361/10000] (7.08GB) Downloading: TCGA-A1-A0SB-01A-01-TS1.ed80b57e-ce46-45d6-b8cf-bb18e254488f.svs (308.98 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[362/10000] (7.38GB) Downloading: STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D10_1388110.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[363/10000] (7.38GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[364/10000] (7.38GB) Downloading: 3f32cdec-5a60-4147-b313-7c9a9dfefc78.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[365/10000] (7.38GB) Downloading: da03b00f-2c56-47fe-8534-bf561863e209.mirbase21.isoforms.quantification.txt (0.34 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[366/10000] (7.38GB) Downloading: da03b00f-2c56-47fe-8534-bf561863e209.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[367/10000] (7.38GB) Downloading: TCGA-B6-A0IM.4A86A028-C56D-455E-A5CD-47D8A34B5734.PDF (0.13 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[368/10000] (7.38GB) Downloading: 36125e17-48fd-4eea-874c-ed2e2e218402.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[369/10000] (7.39GB) Downloading: TCGA-BRCA.d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[370/10000] (7.39GB) Downloading: TCGA-A8-A08B.2261B407-340D-4BB3-94BC-F06096FBDA80.PDF (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[371/10000] (7.39GB) Downloading: 3d0c9888-3f92-4204-8b82-0d1f325d2aed.mirbase21.isoforms.quantification.txt (0.41 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[372/10000] (7.39GB) Downloading: nationwidechildrens.org_ssf.TCGA-AQ-A7U7.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[373/10000] (7.39GB) Downloading: TCGA-AQ-A7U7-01A-11-A43F-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[374/10000] (7.39GB) Downloading: GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[375/10000] (7.39GB) Downloading: STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D11_1388126.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[376/10000] (7.39GB) Downloading: 1ef63151-386a-4ed1-9384-50a0eb9caa6f.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[377/10000] (7.39GB) Downloading: 13038b2e-07ea-42c1-bdc9-62ffff907332.wgs.ASCAT.gene_level.copy_number_variation.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[378/10000] (7.39GB) Downloading: 3d0c9888-3f92-4204-8b82-0d1f325d2aed.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[379/10000] (7.39GB) Downloading: 1ef63151-386a-4ed1-9384-50a0eb9caa6f.mirbase21.isoforms.quantification.txt (0.43 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[380/10000] (7.39GB) Downloading: TCGA-BRCA.709f0022-50be-49df-839c-9e716e3e0869.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[381/10000] (7.39GB) Downloading: TCGA-BRCA.8b2ac658-78b4-40dc-8151-fb5296ecc828.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[382/10000] (7.39GB) Downloading: 6798cbfe-7aca-4f33-b4fc-162bf579a303.rna_seq.augmented_star_gene_counts.tsv (4.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[383/10000] (7.40GB) Downloading: TCGA-A8-A08B-01A-01-BS1.cd256d6e-99c5-4b32-8bbc-7c1811004b8b.svs (146.13 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[384/10000] (7.54GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.nocnv_grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[385/10000] (7.54GB) Downloading: TCGA-AC-A2FG.C1ABCD83-40EA-4FF7-BEB6-69679589E8E7.PDF (0.11 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[386/10000] (7.54GB) Downloading: TCGA-AQ-A7U7-01Z-00-DX1.AB5629A1-399E-402B-AD3D-DAF9F97D8300.svs (1501.49 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[387/10000] (9.01GB) Downloading: TCGA-AC-A2FG-01A-21-A24A-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[388/10000] (9.01GB) Downloading: TCGA-BRCA.ba8ff683-777a-4d41-9261-014c89e17791.ascat2.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[389/10000] (9.01GB) Downloading: 72a71d75-8f87-4455-9169-5548c3e149e0.methylation_array.sesame.level3betas.txt (0.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[390/10000] (9.01GB) Downloading: ecdac97e-eec5-4753-a572-8aff707178e5.rna_seq.augmented_star_gene_counts.tsv (4.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[391/10000] (9.01GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[392/10000] (9.01GB) Downloading: 72a71d75-8f87-4455-9169-5548c3e149e0_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[393/10000] (9.01GB) Downloading: nationwidechildrens.org_ssf.TCGA-AC-A2FG.xml (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[394/10000] (9.01GB) Downloading: TCGA-BRCA.ba8ff683-777a-4d41-9261-014c89e17791.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[395/10000] (9.01GB) Downloading: nationwidechildrens.org_clinical.TCGA-AC-A2FG.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[396/10000] (9.01GB) Downloading: HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H10_808570.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[397/10000] (9.01GB) Downloading: f418234d-8faf-4959-b087-f28de119193b.methylation_array.sesame.level3betas.txt (0.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[398/10000] (9.02GB) Downloading: TCGA-A8-A08B-01A-11D-A88Z-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.13 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[399/10000] (9.02GB) Downloading: TCGA-AN-A0FD-01A-01-TS1.28f70459-3f79-46e1-bb93-2095f4b29994.svs (821.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[400/10000] (9.82GB) Downloading: TCGA-AN-A0FD.F124155D-6131-47F6-8320-46A41AB125D3.PDF (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[401/10000] (9.82GB) Downloading: 1b8b9a31-863a-45cb-91df-d23efb95eb64.wgs.ASCAT.gene_level.copy_number_variation.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[402/10000] (9.82GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_B02_1513286.nocnv_grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[403/10000] (9.82GB) Downloading: 54c696de-d778-4e79-9cc3-3297eacb1299_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[404/10000] (9.83GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-3C-AALJ.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[405/10000] (9.83GB) Downloading: TCGA-A2-A0CR-01A-01-BSA.EEDC8A56-25C0-4348-B5CD-E91C2CC3411B.svs (266.36 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "[406/10000] (10.09GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_B01_1513238.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[407/10000] (10.09GB) Downloading: KEBAB_p_TCGASNP_226_227_N_GenomeWideSNP_6_G07_1151652.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[408/10000] (10.09GB) Downloading: TCGA-BRCA.e98fb773-897b-48bb-9b3d-387079e5e5db.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[409/10000] (10.09GB) Downloading: f2dda955-5a39-43c1-93a2-83953b2b91d1.rna_seq.augmented_star_gene_counts.tsv (4.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[410/10000] (10.09GB) Downloading: 8a6ebcbf-1d3f-4b3c-ae8b-33776c1c58df_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[411/10000] (10.10GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_B01_1513238.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[412/10000] (10.10GB) Downloading: TCGA-BRCA.6cb7dc53-ea35-431b-9bd9-4f13f5ec40fd.ascat2.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[413/10000] (10.10GB) Downloading: eb03e14a-ac53-4c22-bfde-1230652861a0.mirbase21.isoforms.quantification.txt (0.38 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[414/10000] (10.10GB) Downloading: TCGA-E9-A6HE-01A-01-TSA.0EC4715E-A5F7-48BF-B95E-8532C3F101D6.svs (444.25 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[415/10000] (10.53GB) Downloading: TCGA-BRCA.6cb7dc53-ea35-431b-9bd9-4f13f5ec40fd.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[416/10000] (10.54GB) Downloading: TCGA-BRCA.4d7aae97-ae34-43e0-97a4-bfb15e3543b4.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[417/10000] (10.54GB) Downloading: TCGA-3C-AALJ-01A-03-TSC.272FA991-8382-409A-A00A-9A3BAA6EE041.svs (307.58 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[418/10000] (10.84GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_B02_1513286.grch38.seg.v2.txt (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[419/10000] (10.84GB) Downloading: nationwidechildrens.org_ssf.TCGA-3C-AALJ.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[420/10000] (10.84GB) Downloading: TCGA-BRCA.6cb7dc53-ea35-431b-9bd9-4f13f5ec40fd.ascat3.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[421/10000] (10.84GB) Downloading: TCGA-BRCA.e98fb773-897b-48bb-9b3d-387079e5e5db.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[422/10000] (10.84GB) Downloading: 20171ef3-0986-476f-96f8-9d6051835771.methylation_array.sesame.level3betas.txt (12.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[423/10000] (10.86GB) Downloading: bf75588b-350e-40cf-b339-6055f04b8c3b_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.43 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[424/10000] (10.86GB) Downloading: 09a8fbb6-a236-4c64-be34-932db3fd3f06.mirbase21.isoforms.quantification.txt (0.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[425/10000] (10.86GB) Downloading: nationwidechildrens.org_ssf.TCGA-AC-A4ZE.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[426/10000] (10.86GB) Downloading: TCGA-BRCA.09a78982-3fe5-4dd0-be97-03b03a6bf683.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[427/10000] (10.86GB) Downloading: TCGA-BRCA.09a78982-3fe5-4dd0-be97-03b03a6bf683.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[428/10000] (10.86GB) Downloading: e7c2b898-cd11-42a1-b309-b4de1ab01965.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[429/10000] (10.86GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-AC-A4ZE.xml (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[430/10000] (10.86GB) Downloading: 3d05d072-d042-4c02-aaf6-ee2e589003d6.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[431/10000] (10.87GB) Downloading: TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_F09_1513288.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[432/10000] (10.87GB) Downloading: TCGA-BRCA.cea1bfb5-fe63-4515-8f2b-66696afa23b2.ascat2.allelic_specific.seg.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[433/10000] (10.87GB) Downloading: TCGA-AO-A124-01Z-00-DX1.E3C7B017-6154-4630-9BDE-0CAC946D0209.svs (439.35 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[434/10000] (11.30GB) Downloading: 258a2c7f-93e3-4106-9435-b80bd6493e02_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[435/10000] (11.30GB) Downloading: bb06ad3a-4d73-4f88-8f3c-954dce2b38ef.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[436/10000] (11.31GB) Downloading: TCGA-AC-A4ZE-01A-01-TS1.98A0B048-54FF-4550-8C6B-7DA21EB71123.svs (334.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[437/10000] (11.64GB) Downloading: 987528ac-437a-4eb8-a335-4f2076d5c006_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.42 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[438/10000] (11.64GB) Downloading: TCGA-AC-A4ZE-01Z-00-DX1.A9BB4DBC-4314-4A77-AA1C-0882DBC370F1.svs (74.58 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[439/10000] (11.71GB) Downloading: TCGA-BRCA.071b569b-3b44-4a6b-ac2c-bbda7d13c501.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[440/10000] (11.71GB) Downloading: EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F04_802340.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[441/10000] (11.71GB) Downloading: TCGA-BRCA.09a78982-3fe5-4dd0-be97-03b03a6bf683.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[442/10000] (11.72GB) Downloading: 0af39534-c671-4121-8ca6-dbdb27ec78a5.wgs.ASCAT.copy_number_variation.seg.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[443/10000] (11.72GB) Downloading: bffe5d89-f332-49ac-bd92-8271144ed37d.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[444/10000] (11.72GB) Downloading: TCGA-D8-A1JG-01B-01-TSA.321ed03a-e75f-4611-812b-04c6ac512160.svs (166.36 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[445/10000] (11.88GB) Downloading: TCGA-E9-A6HE-01A-21-A321-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[446/10000] (11.88GB) Downloading: 68af26da-eac0-4aae-99f2-74656bbfe13a_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[447/10000] (11.89GB) Downloading: TCGA-D8-A1JG-01B-21-A17J-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[448/10000] (11.89GB) Downloading: b1aa9f3c-c857-4e7d-8d95-8e22911c6373_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[449/10000] (11.89GB) Downloading: ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[450/10000] (11.89GB) Downloading: TCGA-BRCA.4d7aae97-ae34-43e0-97a4-bfb15e3543b4.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[451/10000] (11.89GB) Downloading: ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[452/10000] (11.89GB) Downloading: 466218d9-e426-4808-bcf8-1feba56856ea.mirbase21.isoforms.quantification.txt (0.21 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[453/10000] (11.89GB) Downloading: BURSA_p_TCGA_303_304_305_N_GenomeWideSNP_6_D12_1344718.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[454/10000] (11.89GB) Downloading: TCGA-BRCA.e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[455/10000] (11.89GB) Downloading: TCGA-BRCA.04ca65ff-5024-4c58-9c7e-5f03691f3c6d.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[456/10000] (11.89GB) Downloading: TCGA-BRCA.2c01b1ef-d826-4183-b79d-903d4fe5ef5e.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[457/10000] (11.89GB) Downloading: BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[458/10000] (11.89GB) Downloading: TCGA-BRCA.2c01b1ef-d826-4183-b79d-903d4fe5ef5e.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[459/10000] (11.89GB) Downloading: TCGA-AO-A128.03526CFD-0C3E-4ACB-AB26-3E0B0ED0ADA2.PDF (0.32 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[460/10000] (11.89GB) Downloading: SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[461/10000] (11.89GB) Downloading: TCGA-A8-A0A2-01A-11D-A88Z-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[462/10000] (11.89GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[463/10000] (11.89GB) Downloading: 4533d48d-2182-499f-8ebb-43ba75f6d589.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[464/10000] (11.89GB) Downloading: f9a3b84f-3b73-4f5f-8b68-1aa1fa553ee7.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[465/10000] (11.89GB) Downloading: TCGA-BRCA.2c01b1ef-d826-4183-b79d-903d4fe5ef5e.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[466/10000] (11.89GB) Downloading: SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[467/10000] (11.89GB) Downloading: nationwidechildrens.org_clinical.TCGA-A8-A0A2.xml (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[468/10000] (11.89GB) Downloading: d6c2ec66-21cc-40ab-b600-d8437b4f291a.methylation_array.sesame.level3betas.txt (0.73 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[469/10000] (11.89GB) Downloading: TCGA-B6-A0RM-01A-01-TSA.12501542-b8cb-4b36-bc66-67ef4578d7d1.svs (186.39 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[470/10000] (12.08GB) Downloading: TCGA-BRCA.04ca65ff-5024-4c58-9c7e-5f03691f3c6d.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[471/10000] (12.08GB) Downloading: TCGA-A8-A0A2-01A-01-TS1.124134ed-c4d2-4a08-937c-1def71bfcc42.svs (113.12 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[472/10000] (12.19GB) Downloading: nationwidechildrens.org_ssf.TCGA-OL-A66K.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[473/10000] (12.19GB) Downloading: TCGA-BRCA.04ca65ff-5024-4c58-9c7e-5f03691f3c6d.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[474/10000] (12.19GB) Downloading: TCGA-B6-A0RM-01Z-00-DX1.31DE3E32-7996-4D30-BB5F-72C94409C940.svs (873.98 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[475/10000] (13.04GB) Downloading: 5861fadd-0879-4697-a1cd-43e77b205c26.mirbase21.isoforms.quantification.txt (0.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[476/10000] (13.04GB) Downloading: 7456abd5-303e-4e6f-bf4e-47efefc7310f_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[477/10000] (13.04GB) Downloading: TCGA-A7-A6VV.C26EAF0E-202B-4F3E-9E59-3395A1BFCAB8.PDF (0.12 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[478/10000] (13.04GB) Downloading: TCGA-BRCA.7406aaff-b28a-4b4c-8fa3-b4e208b8cf85.ascat2.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[479/10000] (13.04GB) Downloading: 4f6114a2-0125-4bf5-8d62-d890fa751ee9.methylation_array.sesame.level3betas.txt (12.54 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[480/10000] (13.06GB) Downloading: nationwidechildrens.org_clinical.TCGA-GM-A2DF.xml (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[481/10000] (13.06GB) Downloading: 7b280634-96e6-4ad2-b636-ef9984e9d4c6.mirbase21.isoforms.quantification.txt (0.31 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[482/10000] (13.06GB) Downloading: TCGA-B6-A0RM-01A-21-A13C-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[483/10000] (13.06GB) Downloading: TCGA-BRCA.e96765f9-45a3-446f-924a-45202dd4b7db.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[484/10000] (13.06GB) Downloading: HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[485/10000] (13.06GB) Downloading: COPAL_p_TCGAb_337_338_339_NSP_GenomeWideSNP_6_E09_1373726.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[486/10000] (13.06GB) Downloading: 834c20ca-a255-4e06-b31a-72879130e494.wxs.aliquot_ensemble_masked.maf.gz (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[487/10000] (13.06GB) Downloading: nationwidechildrens.org_clinical.TCGA-A7-A6VV.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[488/10000] (13.06GB) Downloading: TCGA-BRCA.7406aaff-b28a-4b4c-8fa3-b4e208b8cf85.ascat3.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[489/10000] (13.06GB) Downloading: TCGA-BRCA.e96765f9-45a3-446f-924a-45202dd4b7db.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[490/10000] (13.06GB) Downloading: 70b01035-2be3-4d5f-b388-3a92ffb2853a.methylation_array.sesame.level3betas.txt (0.73 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[491/10000] (13.06GB) Downloading: 112fb65d-da5d-4261-8b05-950f1b018efe.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[492/10000] (13.06GB) Downloading: PITON_p_TCGA_b162_167_SNP_N_GenomeWideSNP_6_C03_844800.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[493/10000] (13.06GB) Downloading: TCGA-E9-A22A-01A-21-A17K-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[494/10000] (13.06GB) Downloading: HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[495/10000] (13.06GB) Downloading: TCGA-BRCA.8bb0471f-9d25-4c27-9a4c-ecc00090a7da.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[496/10000] (13.06GB) Downloading: 70b01035-2be3-4d5f-b388-3a92ffb2853a_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[497/10000] (13.06GB) Downloading: 44f1c070-57db-475a-979a-d384eabe4589_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[498/10000] (13.07GB) Downloading: c1f95e8e-aaaa-4090-8f64-c619aa543d1b.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[499/10000] (13.07GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[500/10000] (13.07GB) Downloading: 66705e98-15ad-4eab-9901-7d1f6c0c2e57_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[501/10000] (13.07GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-E9-A22A.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[502/10000] (13.07GB) Downloading: HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[503/10000] (13.07GB) Downloading: nationwidechildrens.org_ssf.TCGA-A8-A095.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[504/10000] (13.07GB) Downloading: TCGA-BRCA.8bb0471f-9d25-4c27-9a4c-ecc00090a7da.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[505/10000] (13.07GB) Downloading: ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.nocnv_grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[506/10000] (13.07GB) Downloading: eb5b35df-0277-49c4-803e-0ccc2545aa2a_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[507/10000] (13.08GB) Downloading: TCGA-BRCA.6eee21c1-5bc4-4eb7-bf40-151fc831d5b9.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[508/10000] (13.08GB) Downloading: USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D02_787546.nocnv_grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[509/10000] (13.08GB) Downloading: 707fad7d-f284-456a-abfa-17289b40579f.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[510/10000] (13.09GB) Downloading: TCGA-BRCA.3b807901-2667-4023-8210-20c0ebb5d189.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[511/10000] (13.09GB) Downloading: TCGA-BRCA.8bb0471f-9d25-4c27-9a4c-ecc00090a7da.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[512/10000] (13.09GB) Downloading: TCGA-BRCA.3b807901-2667-4023-8210-20c0ebb5d189.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[513/10000] (13.10GB) Downloading: TCGA-BH-A0BZ-01A-03-BSC.875682e9-3d99-4189-8ad1-f1e4e4bb7610.svs (702.46 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[514/10000] (13.78GB) Downloading: ea91d00f-af87-49b8-b7ee-0fb7f486c904_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[515/10000] (13.79GB) Downloading: 20f5ce9d-da3c-462e-a82d-3e0d0c8d28ed_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[516/10000] (13.79GB) Downloading: 07b5141f-ac79-439b-883b-b0183bbe7ff5_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.13 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[517/10000] (13.79GB) Downloading: ea91d00f-af87-49b8-b7ee-0fb7f486c904.methylation_array.sesame.level3betas.txt (12.33 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[518/10000] (13.80GB) Downloading: TCGA-BH-A0BZ-01A-31D-A890-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.15 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[519/10000] (13.80GB) Downloading: 741fb6d6-364f-47a0-a262-f18235c48fc4.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[520/10000] (13.81GB) Downloading: nationwidechildrens.org_clinical.TCGA-BH-A0BZ.xml (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[521/10000] (13.81GB) Downloading: JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[522/10000] (13.81GB) Downloading: TCGA-BRCA.6eee21c1-5bc4-4eb7-bf40-151fc831d5b9.ascat2.allelic_specific.seg.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[523/10000] (13.81GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.grch38.seg.v2.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[524/10000] (13.81GB) Downloading: acc69d43-989d-4ee9-a767-9470c099ad78.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[525/10000] (13.81GB) Downloading: TCGA-BRCA.75a4c81e-50fb-4ea4-b973-9e6e666f0e19.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[526/10000] (13.81GB) Downloading: c039beb5-6e40-481c-a2e9-e138c65a401f_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[527/10000] (13.81GB) Downloading: 84fad10f-82a3-41a0-bbc8-8be2a4962880.mirbase21.isoforms.quantification.txt (0.33 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[528/10000] (13.81GB) Downloading: MINAE_p_TCGA_200_202_203_SNP_N_GenomeWideSNP_6_D04_955122.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[529/10000] (13.81GB) Downloading: TCGA-BH-A1FE-06A-21-A24B-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[530/10000] (13.81GB) Downloading: TCGA-BRCA.75a4c81e-50fb-4ea4-b973-9e6e666f0e19.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[531/10000] (13.81GB) Downloading: TCGA-BRCA.43ba3339-996b-4477-878f-4a62c471ab5f.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[532/10000] (13.81GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[533/10000] (13.81GB) Downloading: fc453520-f6f1-4f4f-b3a6-0d4c6c4650c1.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[534/10000] (13.81GB) Downloading: TCGA-BRCA.1427907e-73c9-42c0-ab7b-64cd9b64d874.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[535/10000] (13.82GB) Downloading: TCGA-BRCA.75a4c81e-50fb-4ea4-b973-9e6e666f0e19.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[536/10000] (13.82GB) Downloading: TCGA-BRCA.9817a432-9c60-42d5-928e-531e3fd480dd.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[537/10000] (13.82GB) Downloading: TCGA-BH-A1FE.098BAFB4-94D0-4FC8-B938-D8A410BD8FC1.PDF (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[538/10000] (13.82GB) Downloading: 2e4316d2-5fe5-4ee1-9b22-73f4c42b6202.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[539/10000] (13.83GB) Downloading: 20f5ce9d-da3c-462e-a82d-3e0d0c8d28ed_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[540/10000] (13.83GB) Downloading: c9c7106d-96eb-4f60-b0bf-b2b6395d7f7b.methylation_array.sesame.level3betas.txt (12.51 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[541/10000] (13.84GB) Downloading: 427217a0-b24a-4c7f-bc17-c0094b490bdc.mirbase21.isoforms.quantification.txt (0.38 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[542/10000] (13.84GB) Downloading: nationwidechildrens.org_clinical.TCGA-BH-A1FE.xml (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[543/10000] (13.84GB) Downloading: TCGA-BH-A1FE-11B-21-A43P-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[544/10000] (13.84GB) Downloading: aa7994b6-8924-4e0c-b074-df337441195e.methylation_array.sesame.level3betas.txt (0.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[545/10000] (13.84GB) Downloading: 44022d72-6b45-4ad5-85c5-927df181405d.mirbase21.isoforms.quantification.txt (0.36 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[546/10000] (13.84GB) Downloading: 6366b160-c124-4a56-b6a7-e159ea8a096d_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[547/10000] (13.85GB) Downloading: TCGA-BRCA.8b4314b3-0f2a-4451-87ff-ad498c7a1ab9.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[548/10000] (13.85GB) Downloading: b7ab41cb-7b24-403e-bea7-d994b53ea992.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[549/10000] (13.85GB) Downloading: fc453520-f6f1-4f4f-b3a6-0d4c6c4650c1.mirbase21.isoforms.quantification.txt (0.35 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[550/10000] (13.85GB) Downloading: TCGA-B6-A0IA-01A-01-BSA.6a397611-09c6-4511-bfa0-f423c3d35488.svs (233.13 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[551/10000] (14.08GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[552/10000] (14.08GB) Downloading: TCGA-BRCA.8b4314b3-0f2a-4451-87ff-ad498c7a1ab9.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[553/10000] (14.08GB) Downloading: TCGA-A8-A07F-01A-01-BS1.288ddf7f-30dc-4fed-a4ca-18fa8172e3ee.svs (343.47 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[554/10000] (14.42GB) Downloading: RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D01_772032.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[555/10000] (14.42GB) Downloading: 30671b2b-1583-4908-bfab-25a9ccb16997.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[556/10000] (14.42GB) Downloading: nationwidechildrens.org_clinical.TCGA-A8-A07F.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[557/10000] (14.42GB) Downloading: TCGA-BRCA.1609caae-f341-4227-ac2a-a76a6c253e95.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[558/10000] (14.42GB) Downloading: RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F05_771958.nocnv_grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[559/10000] (14.42GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml (0.10 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[560/10000] (14.42GB) Downloading: TCGA-B6-A0IA-01A-11D-A892-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[561/10000] (14.42GB) Downloading: TCGA-BRCA.1427907e-73c9-42c0-ab7b-64cd9b64d874.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[562/10000] (14.42GB) Downloading: 3f3b6a7b-94f0-40a3-9f16-32bab2854678.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[563/10000] (14.43GB) Downloading: TCGA-BRCA.1427907e-73c9-42c0-ab7b-64cd9b64d874.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[564/10000] (14.43GB) Downloading: 6366b160-c124-4a56-b6a7-e159ea8a096d.methylation_array.sesame.level3betas.txt (12.49 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[565/10000] (14.44GB) Downloading: 88fba14d-36a9-4d0d-b324-27cfcc60d19b_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[566/10000] (14.44GB) Downloading: TCGA-BH-A1FE.3F499CDC-18A3-44A7-B796-71716F2A2BD2.PDF (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[567/10000] (14.44GB) Downloading: TCGA-BRCA.1a12cd14-3f98-41bd-b89f-c0fb2848f8d5.ascat3.gene_level_copy_number.v36.tsv (3.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[568/10000] (14.45GB) Downloading: d313dc0e-3840-487d-be90-817a1ef43f82.methylation_array.sesame.level3betas.txt (12.41 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[569/10000] (14.46GB) Downloading: RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F05_771958.grch38.seg.v2.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[570/10000] (14.46GB) Downloading: TCGA-BRCA.1a12cd14-3f98-41bd-b89f-c0fb2848f8d5.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[571/10000] (14.46GB) Downloading: TCGA-BRCA.1609caae-f341-4227-ac2a-a76a6c253e95.ascat2.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[572/10000] (14.46GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[573/10000] (14.46GB) Downloading: TCGA-AN-A0FZ-01A-11D-A891-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.17 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[574/10000] (14.46GB) Downloading: TCGA-AN-A0FZ-01A-01-BS1.be535fd3-262b-4b53-9411-c4021e2e0419.svs (426.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[575/10000] (14.88GB) Downloading: nationwidechildrens.org_biospecimen_sample_brca.txt (0.96 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[576/10000] (14.88GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[577/10000] (14.88GB) Downloading: 6efbf774-e5f0-45e2-aa14-554c0604bb02.methylation_array.sesame.level3betas.txt (12.25 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[578/10000] (14.89GB) Downloading: 62afbd74-0a4e-4dd1-8e27-c4d8f3c778e6_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[579/10000] (14.89GB) Downloading: TCGA-AN-A0FL-01A-21-A13A-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[580/10000] (14.89GB) Downloading: db01aba1-3a00-4bf9-9f24-8fba144144f3.rna_seq.augmented_star_gene_counts.tsv (4.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[581/10000] (14.90GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[582/10000] (14.90GB) Downloading: TCGA-C8-A12Y.28E368DA-56B9-4BB1-99C3-7FF2CEC964CF.PDF (0.20 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[583/10000] (14.90GB) Downloading: TCGA-B6-A0WT-01A-11D-A893-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[584/10000] (14.90GB) Downloading: TCGA-B6-A0WT.BACD800B-F320-472C-ACFF-175E9F525E9F.PDF (0.11 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[585/10000] (14.90GB) Downloading: TCGA-C8-A12Y-01A-01-TSA.12966473-7301-460a-b03b-02453e5804ac.svs (132.07 MB)... "
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "It seems you are trying to upload a large folder at once. This might take some time and then fail if the folder is too large. For such cases, it is recommended to upload in smaller batches or to use `HfApi().upload_large_folder(...)`/`hf upload-large-folder` instead. For more details, check out https://huggingface.co/docs/huggingface_hub/main/en/guides/upload#upload-a-large-folder.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "\n",
+      "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n",
+      "CẢNH BÁO: Dung lượng đã đạt giới hạn (15.02 GB).\n",
+      "Đang tiến hành upload lên Hugging Face và giải phóng bộ nhớ...\n",
+      "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n",
+      "\n"
+     ]
+    },
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "5302892aa41949b3ace0dadefc547b48",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "Processing Files (0 / 0): |          |  0.00B /  0.00B            "
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
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+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "New Data Upload: |          |  0.00B /  0.00B            "
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
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data/gdc_data_organized/0045349c-69d9-4306-a403-c9c1fa836644/4fbe4ee1-7efd-4ba4-8116-5ab3b4666b48.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	38052	16731.552070	N
+hsa-let-7a-2	38123	16762.770934	Y
+hsa-let-7a-3	38425	16895.561029	N
+hsa-let-7b	211210	92869.523618	N
+hsa-let-7c	24521	10781.940195	Y
+hsa-let-7d	3190	1402.650350	N
+hsa-let-7e	1396	613.824416	N
+hsa-let-7f-1	6307	2773.202431	N
+hsa-let-7f-2	6541	2876.092770	N
+hsa-let-7g	2812	1236.442879	N
+hsa-let-7i	3227	1418.919335	N
+hsa-mir-1-1	0	0.000000	N
+hsa-mir-1-2	3	1.319107	N
+hsa-mir-100	8786	3863.224443	Y
+hsa-mir-101-1	24263	10668.497001	N
+hsa-mir-101-2	24368	10714.665743	N
+hsa-mir-103a-1	10779	4739.551134	Y
+hsa-mir-103a-2	10602	4661.723827	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	0	0.000000	N
+hsa-mir-105-2	0	0.000000	N
+hsa-mir-106a	82	36.055589	Y
+hsa-mir-106b	2317	1018.790238	N
+hsa-mir-107	144	63.317132	Y
+hsa-mir-10a	38010	16713.084573	N
+hsa-mir-10b	51989	22859.683080	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	0	0.000000	N
+hsa-mir-1180	14	6.155832	N
+hsa-mir-1181	0	0.000000	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
+hsa-mir-1184-1	0	0.000000	N
+hsa-mir-1184-2	0	0.000000	N
+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	1	0.439702	N
+hsa-mir-1185-2	0	0.000000	N
+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	0	0.000000	N
+hsa-mir-1199	0	0.000000	N
+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	0	0.000000	N
+hsa-mir-1224	0	0.000000	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	7	3.077916	N
+hsa-mir-1227	0	0.000000	N
+hsa-mir-1228	3	1.319107	N
+hsa-mir-1229	2	0.879405	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	1	0.439702	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	0	0.000000	N
+hsa-mir-1238	0	0.000000	N
+hsa-mir-124-1	0	0.000000	N
+hsa-mir-124-2	0	0.000000	N
+hsa-mir-124-3	0	0.000000	N
+hsa-mir-1243	0	0.000000	N
+hsa-mir-1244-1	0	0.000000	N
+hsa-mir-1244-2	0	0.000000	N
+hsa-mir-1244-3	0	0.000000	N
+hsa-mir-1244-4	0	0.000000	N
+hsa-mir-1245a	5	2.198512	N
+hsa-mir-1245b	0	0.000000	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	82	36.055589	N
+hsa-mir-1248	2	0.879405	N
+hsa-mir-1249	7	3.077916	N
+hsa-mir-1250	0	0.000000	N
+hsa-mir-1251	1	0.439702	N
+hsa-mir-1252	1	0.439702	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	0	0.000000	N
+hsa-mir-1254-2	2	0.879405	N
+hsa-mir-1255a	3	1.319107	N
+hsa-mir-1255b-1	0	0.000000	N
+hsa-mir-1255b-2	0	0.000000	N
+hsa-mir-1256	0	0.000000	N
+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	0	0.000000	N
+hsa-mir-125a	6518	2865.979617	N
+hsa-mir-125b-1	5378	2364.718991	N
+hsa-mir-125b-2	5407	2377.470357	N
+hsa-mir-126	4244	1866.096578	N
+hsa-mir-1260a	0	0.000000	N
+hsa-mir-1260b	0	0.000000	N
+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	2	0.879405	N
+hsa-mir-1263	0	0.000000	N
+hsa-mir-1264	0	0.000000	N
+hsa-mir-1265	0	0.000000	N
+hsa-mir-1266	15	6.595535	N
+hsa-mir-1267	0	0.000000	N
+hsa-mir-1268a	0	0.000000	N
+hsa-mir-1268b	0	0.000000	N
+hsa-mir-1269a	3	1.319107	N
+hsa-mir-1269b	0	0.000000	N
+hsa-mir-127	8005	3519.816943	N
+hsa-mir-1270	15	6.595535	N
+hsa-mir-1271	98	43.090826	N
+hsa-mir-1272	0	0.000000	N
+hsa-mir-1273a	0	0.000000	N
+hsa-mir-1273c	0	0.000000	N
+hsa-mir-1273d	0	0.000000	N
+hsa-mir-1273e	0	0.000000	N
+hsa-mir-1273f	0	0.000000	N
+hsa-mir-1273g	0	0.000000	N
+hsa-mir-1273h	0	0.000000	N
+hsa-mir-1275	5	2.198512	N
+hsa-mir-1276	1	0.439702	N
+hsa-mir-1277	8	3.517618	N
+hsa-mir-1278	1	0.439702	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	188	82.664033	N
+hsa-mir-128-2	119	52.324574	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
+hsa-mir-1283-1	0	0.000000	N
+hsa-mir-1283-2	0	0.000000	N
+hsa-mir-1284	4	1.758809	N
+hsa-mir-1285-1	0	0.000000	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	244	107.287362	N
+hsa-mir-1288	0	0.000000	N
+hsa-mir-1289-1	0	0.000000	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	1	0.439702	N
+hsa-mir-129-2	1	0.439702	N
+hsa-mir-1290	0	0.000000	N
+hsa-mir-1291	1	0.439702	N
+hsa-mir-1292	1	0.439702	N
+hsa-mir-1293	0	0.000000	N
+hsa-mir-1294	0	0.000000	N
+hsa-mir-1295a	3	1.319107	N
+hsa-mir-1295b	0	0.000000	N
+hsa-mir-1296	58	25.502734	N
+hsa-mir-1297	0	0.000000	N
+hsa-mir-1298	0	0.000000	N
+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	17	7.474939	N
+hsa-mir-1302-1	0	0.000000	N
+hsa-mir-1302-10	0	0.000000	N
+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
+hsa-mir-1302-7	0	0.000000	N
+hsa-mir-1302-8	0	0.000000	N
+hsa-mir-1302-9	0	0.000000	N
+hsa-mir-1303	0	0.000000	N
+hsa-mir-1304	2	0.879405	N
+hsa-mir-1305	0	0.000000	N
+hsa-mir-1306	62	27.261543	N
+hsa-mir-1307	3589	1578.091569	N
+hsa-mir-130a	1352	594.477515	N
+hsa-mir-130b	159	69.912666	N
+hsa-mir-132	402	176.760326	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	2	0.879405	N
+hsa-mir-133a-2	1	0.439702	N
+hsa-mir-133b	0	0.000000	N
+hsa-mir-134	3408	1498.505452	N
+hsa-mir-1343	4	1.758809	N
+hsa-mir-135a-1	6	2.638214	N
+hsa-mir-135a-2	7	3.077916	N
+hsa-mir-135b	317	139.385630	N
+hsa-mir-136	837	368.030828	N
+hsa-mir-137	0	0.000000	N
+hsa-mir-138-1	0	0.000000	N
+hsa-mir-138-2	0	0.000000	N
+hsa-mir-139	88	38.693803	N
+hsa-mir-140	2710	1191.593244	N
+hsa-mir-141	5701	2506.742835	N
+hsa-mir-142	1958	860.937111	N
+hsa-mir-143	126501	55622.781152	N
+hsa-mir-144	159	69.912666	N
+hsa-mir-145	12300	5408.338339	N
+hsa-mir-1468	34	14.949878	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	2160	949.756977	N
+hsa-mir-146b	865	380.342493	N
+hsa-mir-1470	0	0.000000	N
+hsa-mir-1471	0	0.000000	N
+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	1	0.439702	N
+hsa-mir-148a	300043	131929.598385	N
+hsa-mir-148b	767	337.251667	N
+hsa-mir-149	70	30.779161	N
+hsa-mir-150	344	151.257593	N
+hsa-mir-151a	4166	1831.799798	N
+hsa-mir-151b	28	12.311665	N
+hsa-mir-152	1348	592.718706	N
+hsa-mir-153-1	0	0.000000	N
+hsa-mir-153-2	12	5.276428	N
+hsa-mir-1537	2	0.879405	N
+hsa-mir-1538	2	0.879405	N
+hsa-mir-1539	1	0.439702	N
+hsa-mir-154	76	33.417375	N
+hsa-mir-155	258	113.443194	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	210	92.337484	N
+hsa-mir-15b	409	179.838242	N
+hsa-mir-16-1	975	428.709746	N
+hsa-mir-16-2	980	430.908258	N
+hsa-mir-17	2894	1272.498468	Y
+hsa-mir-181a-1	7831	3443.308742	N
+hsa-mir-181a-2	22667	9966.732124	N
+hsa-mir-181b-1	1937	851.703363	N
+hsa-mir-181b-2	1937	851.703363	N
+hsa-mir-181c	945	415.518677	N
+hsa-mir-181d	174	76.508201	N
+hsa-mir-182	70871	31162.141983	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	18835	8281.792895	N
+hsa-mir-184	0	0.000000	N
+hsa-mir-185	36	15.829283	N
+hsa-mir-186	1373	603.711263	N
+hsa-mir-187	293	128.832775	N
+hsa-mir-188	18	7.914641	N
+hsa-mir-18a	27	11.871962	Y
+hsa-mir-18b	5	2.198512	Y
+hsa-mir-1908	0	0.000000	N
+hsa-mir-1909	0	0.000000	N
+hsa-mir-190a	35	15.389581	N
+hsa-mir-190b	2	0.879405	N
+hsa-mir-191	3867	1700.328809	N
+hsa-mir-1910	1	0.439702	N
+hsa-mir-1911	0	0.000000	N
+hsa-mir-1912	0	0.000000	N
+hsa-mir-1913	0	0.000000	N
+hsa-mir-1914	0	0.000000	N
+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	2885	1268.541147	Y
+hsa-mir-193a	1045	459.488908	N
+hsa-mir-193b	199	87.500758	N
+hsa-mir-194-1	302	132.790096	N
+hsa-mir-194-2	312	137.187119	N
+hsa-mir-195	394	173.242708	N
+hsa-mir-196a-1	1718	755.408558	N
+hsa-mir-196a-2	1871	822.683011	N
+hsa-mir-196b	12715	5590.814795	N
+hsa-mir-197	1179	518.409016	N
+hsa-mir-1972-1	0	0.000000	N
+hsa-mir-1972-2	0	0.000000	N
+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	13	5.716130	N
+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	12230	5377.559177	Y
+hsa-mir-199a-2	21819	9593.864570	Y
+hsa-mir-199b	28858	12688.929087	Y
+hsa-mir-19a	117	51.445170	N
+hsa-mir-19b-1	602	264.700787	N
+hsa-mir-19b-2	418	183.795563	N
+hsa-mir-200a	3689	1622.061799	N
+hsa-mir-200b	2277	1001.202146	N
+hsa-mir-200c	26556	11676.734384	N
+hsa-mir-202	2	0.879405	N
+hsa-mir-203a	25457	11193.501552	N
+hsa-mir-203b	179	78.706712	N
+hsa-mir-204	53	23.304222	N
+hsa-mir-205	44386	19516.626463	N
+hsa-mir-2052	0	0.000000	N
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+hsa-mir-2054	0	0.000000	N
+hsa-mir-206	0	0.000000	N
+hsa-mir-208a	0	0.000000	N
+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	810	356.158866	N
+hsa-mir-20b	88	38.693803	N
+hsa-mir-21	145853	64131.900138	N
+hsa-mir-210	1251	550.067582	N
+hsa-mir-211	0	0.000000	N
+hsa-mir-2110	7	3.077916	N
+hsa-mir-2113	0	0.000000	N
+hsa-mir-2114	8	3.517618	N
+hsa-mir-2115	1	0.439702	N
+hsa-mir-2116	7	3.077916	N
+hsa-mir-2117	1	0.439702	N
+hsa-mir-212	12	5.276428	N
+hsa-mir-214	155	68.153857	N
+hsa-mir-215	29	12.751367	Y
+hsa-mir-216a	4	1.758809	N
+hsa-mir-216b	0	0.000000	N
+hsa-mir-217	32	14.070474	N
+hsa-mir-218-1	139	61.118620	N
+hsa-mir-218-2	130	57.161300	N
+hsa-mir-219a-1	5	2.198512	N
+hsa-mir-219a-2	1	0.439702	N
+hsa-mir-219b	1	0.439702	N
+hsa-mir-22	99928	43938.571829	N
+hsa-mir-221	549	241.396565	N
+hsa-mir-222	417	183.355861	N
+hsa-mir-223	101	44.409933	N
+hsa-mir-224	183	80.465522	N
+hsa-mir-2276	0	0.000000	N
+hsa-mir-2277	17	7.474939	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	154	67.714155	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	6574	2890.602946	Y
+hsa-mir-23b	12053	5299.731870	Y
+hsa-mir-23c	1	0.439702	N
+hsa-mir-24-1	2254	991.088993	N
+hsa-mir-24-2	1954	859.178302	N
+hsa-mir-2467	0	0.000000	N
+hsa-mir-25	30408	13370.467659	N
+hsa-mir-2681	0	0.000000	N
+hsa-mir-2682	0	0.000000	N
+hsa-mir-26a-1	4129	1815.530813	N
+hsa-mir-26a-2	4016	1765.844453	N
+hsa-mir-26b	3068	1349.006669	N
+hsa-mir-27a	1874	824.002118	Y
+hsa-mir-27b	6088	2676.907626	Y
+hsa-mir-28	15092	6635.987171	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	85	37.374696	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	28	12.311665	N
+hsa-mir-29a	15626	6870.788202	N
+hsa-mir-29b-1	413	181.597052	N
+hsa-mir-29b-2	479	210.617404	N
+hsa-mir-29c	1678	737.820466	N
+hsa-mir-300	0	0.000000	N
+hsa-mir-301a	87	38.254100	N
+hsa-mir-301b	4	1.758809	N
+hsa-mir-302a	0	0.000000	N
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+hsa-mir-302c	0	0.000000	N
+hsa-mir-302d	0	0.000000	N
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+hsa-mir-302f	0	0.000000	N
+hsa-mir-3064	0	0.000000	N
+hsa-mir-3065	236	103.769744	N
+hsa-mir-3074	53	23.304222	N
+hsa-mir-30a	139643	61401.348831	Y
+hsa-mir-30b	2396	1053.526720	Y
+hsa-mir-30c-1	2122	933.048289	Y
+hsa-mir-30c-2	2145	943.161442	Y
+hsa-mir-30d	20713	9107.553822	N
+hsa-mir-30e	112104	49292.387082	Y
+hsa-mir-31	42	18.467497	N
+hsa-mir-3115	1	0.439702	N
+hsa-mir-3116-1	0	0.000000	N
+hsa-mir-3116-2	0	0.000000	N
+hsa-mir-3117	0	0.000000	N
+hsa-mir-3118-1	0	0.000000	N
+hsa-mir-3118-2	0	0.000000	N
+hsa-mir-3118-3	0	0.000000	N
+hsa-mir-3118-4	0	0.000000	N
+hsa-mir-3119-1	0	0.000000	N
+hsa-mir-3119-2	0	0.000000	N
+hsa-mir-3120	0	0.000000	N
+hsa-mir-3121	0	0.000000	N
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+hsa-mir-3125	0	0.000000	N
+hsa-mir-3126	2	0.879405	N
+hsa-mir-3127	19	8.354344	N
+hsa-mir-3128	0	0.000000	N
+hsa-mir-3129	0	0.000000	N
+hsa-mir-3130-1	13	5.716130	N
+hsa-mir-3130-2	10	4.397023	N
+hsa-mir-3131	0	0.000000	N
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+hsa-mir-3133	0	0.000000	N
+hsa-mir-3134	0	0.000000	N
+hsa-mir-3135a	0	0.000000	N
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+hsa-mir-3136	4	1.758809	N
+hsa-mir-3137	0	0.000000	N
+hsa-mir-3138	0	0.000000	N
+hsa-mir-3139	0	0.000000	N
+hsa-mir-3140	0	0.000000	N
+hsa-mir-3141	0	0.000000	N
+hsa-mir-3142	0	0.000000	N
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+hsa-mir-3144	0	0.000000	N
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+hsa-mir-3149	0	0.000000	N
+hsa-mir-3150a	1	0.439702	N
+hsa-mir-3150b	3	1.319107	N
+hsa-mir-3151	0	0.000000	N
+hsa-mir-3152	0	0.000000	N
+hsa-mir-3153	0	0.000000	N
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+hsa-mir-3156-2	0	0.000000	N
+hsa-mir-3156-3	0	0.000000	N
+hsa-mir-3157	3	1.319107	N
+hsa-mir-3158-1	2	0.879405	N
+hsa-mir-3158-2	2	0.879405	N
+hsa-mir-3159	0	0.000000	N
+hsa-mir-3160-1	0	0.000000	N
+hsa-mir-3160-2	0	0.000000	N
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+hsa-mir-3168	0	0.000000	N
+hsa-mir-3169	0	0.000000	N
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+hsa-mir-3171	0	0.000000	N
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+hsa-mir-3180-5	0	0.000000	N
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+hsa-mir-3198-2	0	0.000000	N
+hsa-mir-3199-1	2	0.879405	N
+hsa-mir-3199-2	4	1.758809	N
+hsa-mir-32	149	65.515643	N
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+hsa-mir-320b-2	17	7.474939	Y
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+hsa-mir-320c-2	8	3.517618	N
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+hsa-mir-323a	59	25.942436	N
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+hsa-mir-3614	2	0.879405	N
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+hsa-mir-3651	2	0.879405	N
+hsa-mir-3652	3	1.319107	N
+hsa-mir-3653	37	16.268985	N
+hsa-mir-3654	3	1.319107	N
+hsa-mir-3655	2	0.879405	N
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+hsa-mir-3678	2	0.879405	N
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+hsa-mir-3682	2	0.879405	N
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+hsa-mir-3684	2	0.879405	N
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+hsa-mir-3690-2	0	0.000000	N
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+hsa-mir-376a-2	7	3.077916	N
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+hsa-mir-378c	21	9.233748	N
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+hsa-mir-378j	0	0.000000	N
+hsa-mir-379	3545	1558.744668	N
+hsa-mir-380	5	2.198512	N
+hsa-mir-381	80	35.176184	N
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+hsa-mir-383	1	0.439702	N
+hsa-mir-384	0	0.000000	N
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+hsa-mir-3910-2	0	0.000000	N
+hsa-mir-3911	1	0.439702	N
+hsa-mir-3912	2	0.879405	N
+hsa-mir-3913-1	5	2.198512	N
+hsa-mir-3913-2	9	3.957321	N
+hsa-mir-3914-1	0	0.000000	N
+hsa-mir-3914-2	0	0.000000	N
+hsa-mir-3915	0	0.000000	N
+hsa-mir-3916	0	0.000000	N
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+hsa-mir-3918	0	0.000000	N
+hsa-mir-3919	0	0.000000	N
+hsa-mir-3920	0	0.000000	N
+hsa-mir-3921	0	0.000000	N
+hsa-mir-3922	1	0.439702	N
+hsa-mir-3923	0	0.000000	N
+hsa-mir-3924	0	0.000000	N
+hsa-mir-3925	0	0.000000	N
+hsa-mir-3926-1	2	0.879405	N
+hsa-mir-3926-2	5	2.198512	N
+hsa-mir-3927	4	1.758809	N
+hsa-mir-3928	14	6.155832	N
+hsa-mir-3929	0	0.000000	N
+hsa-mir-3934	2	0.879405	N
+hsa-mir-3935	0	0.000000	N
+hsa-mir-3936	0	0.000000	N
+hsa-mir-3937	0	0.000000	N
+hsa-mir-3938	0	0.000000	N
+hsa-mir-3939	0	0.000000	N
+hsa-mir-3940	6	2.638214	N
+hsa-mir-3941	1	0.439702	N
+hsa-mir-3942	0	0.000000	N
+hsa-mir-3943	0	0.000000	N
+hsa-mir-3944	2	0.879405	N
+hsa-mir-3945	0	0.000000	N
+hsa-mir-3960	0	0.000000	N
+hsa-mir-3972	0	0.000000	N
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+hsa-mir-496	23	10.113153	N
+hsa-mir-497	365	160.491341	N
+hsa-mir-498	0	0.000000	N
+hsa-mir-4999	4	1.758809	N
+hsa-mir-499a	2	0.879405	N
+hsa-mir-499b	0	0.000000	N
+hsa-mir-5000	8	3.517618	N
+hsa-mir-5001	4	1.758809	N
+hsa-mir-5002	3	1.319107	N
+hsa-mir-5003	0	0.000000	N
+hsa-mir-5004	0	0.000000	N
+hsa-mir-5006	0	0.000000	N
+hsa-mir-5007	0	0.000000	N
+hsa-mir-5008	0	0.000000	N
+hsa-mir-5009	0	0.000000	N
+hsa-mir-500a	356	156.534020	Y
+hsa-mir-500b	5	2.198512	Y
+hsa-mir-501	51	22.424818	N
+hsa-mir-5010	1	0.439702	N
+hsa-mir-5011	0	0.000000	N
+hsa-mir-502	20	8.794046	Y
+hsa-mir-503	5	2.198512	N
+hsa-mir-504	1	0.439702	N
+hsa-mir-5047	0	0.000000	N
+hsa-mir-505	212	93.216888	N
+hsa-mir-506	0	0.000000	N
+hsa-mir-507	0	0.000000	N
+hsa-mir-508	57	25.063031	N
+hsa-mir-5087	0	0.000000	N
+hsa-mir-5088	0	0.000000	N
+hsa-mir-5089	19	8.354344	N
+hsa-mir-509-1	8	3.517618	N
+hsa-mir-509-2	11	4.836725	N
+hsa-mir-509-3	7	3.077916	N
+hsa-mir-5090	1	0.439702	N
+hsa-mir-5091	1	0.439702	N
+hsa-mir-5092	1	0.439702	N
+hsa-mir-5093	0	0.000000	N
+hsa-mir-5094	0	0.000000	N
+hsa-mir-5095	0	0.000000	N
+hsa-mir-5096	0	0.000000	N
+hsa-mir-510	0	0.000000	N
+hsa-mir-5100	0	0.000000	N
+hsa-mir-511	14	6.155832	N
+hsa-mir-512-1	1	0.439702	N
+hsa-mir-512-2	1	0.439702	N
+hsa-mir-513a-1	0	0.000000	N
+hsa-mir-513a-2	0	0.000000	N
+hsa-mir-513b	0	0.000000	N
+hsa-mir-513c	0	0.000000	N
+hsa-mir-514a-1	4	1.758809	N
+hsa-mir-514a-2	6	2.638214	N
+hsa-mir-514a-3	5	2.198512	N
+hsa-mir-514b	0	0.000000	N
+hsa-mir-515-1	0	0.000000	N
+hsa-mir-515-2	0	0.000000	N
+hsa-mir-516a-1	0	0.000000	N
+hsa-mir-516a-2	3	1.319107	N
+hsa-mir-516b-1	1	0.439702	N
+hsa-mir-516b-2	0	0.000000	N
+hsa-mir-517a	2	0.879405	Y
+hsa-mir-517b	2	0.879405	Y
+hsa-mir-517c	1	0.439702	Y
+hsa-mir-5186	0	0.000000	N
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+hsa-mir-5188	0	0.000000	N
+hsa-mir-5189	0	0.000000	N
+hsa-mir-518a-1	0	0.000000	N
+hsa-mir-518a-2	0	0.000000	N
+hsa-mir-518b	0	0.000000	N
+hsa-mir-518c	4	1.758809	N
+hsa-mir-518d	0	0.000000	N
+hsa-mir-518e	1	0.439702	N
+hsa-mir-518f	2	0.879405	N
+hsa-mir-5190	1	0.439702	N
+hsa-mir-5191	0	0.000000	N
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+hsa-mir-5193	0	0.000000	N
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+hsa-mir-5196	0	0.000000	N
+hsa-mir-5197	0	0.000000	N
+hsa-mir-519a-1	1	0.439702	N
+hsa-mir-519a-2	2	0.879405	Y
+hsa-mir-519b	0	0.000000	N
+hsa-mir-519c	0	0.000000	N
+hsa-mir-519d	0	0.000000	N
+hsa-mir-519e	0	0.000000	N
+hsa-mir-520a	3	1.319107	N
+hsa-mir-520b	2	0.879405	Y
+hsa-mir-520c	0	0.000000	N
+hsa-mir-520d	0	0.000000	N
+hsa-mir-520e	0	0.000000	N
+hsa-mir-520f	0	0.000000	N
+hsa-mir-520g	0	0.000000	N
+hsa-mir-520h	0	0.000000	N
+hsa-mir-521-1	0	0.000000	N
+hsa-mir-521-2	0	0.000000	N
+hsa-mir-522	0	0.000000	N
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+hsa-mir-524	0	0.000000	N
+hsa-mir-525	0	0.000000	N
+hsa-mir-526a-1	0	0.000000	N
+hsa-mir-526a-2	0	0.000000	N
+hsa-mir-526b	9	3.957321	N
+hsa-mir-527	0	0.000000	N
+hsa-mir-532	1770	778.273078	N
+hsa-mir-539	78	34.296780	N
+hsa-mir-541	1	0.439702	N
+hsa-mir-542	226	99.372721	N
+hsa-mir-543	19	8.354344	N
+hsa-mir-544a	3	1.319107	N
+hsa-mir-544b	0	0.000000	N
+hsa-mir-545	8	3.517618	N
+hsa-mir-548a-1	0	0.000000	N
+hsa-mir-548a-2	0	0.000000	N
+hsa-mir-548a-3	0	0.000000	N
+hsa-mir-548aa-1	0	0.000000	N
+hsa-mir-548aa-2	0	0.000000	N
+hsa-mir-548ab	0	0.000000	N
+hsa-mir-548ac	0	0.000000	N
+hsa-mir-548ad	0	0.000000	N
+hsa-mir-548ae-1	0	0.000000	N
+hsa-mir-548ae-2	0	0.000000	N
+hsa-mir-548ag-1	0	0.000000	N
+hsa-mir-548ag-2	0	0.000000	N
+hsa-mir-548ah	0	0.000000	N
+hsa-mir-548ai	0	0.000000	N
+hsa-mir-548aj-1	0	0.000000	N
+hsa-mir-548aj-2	0	0.000000	N
+hsa-mir-548ak	0	0.000000	N
+hsa-mir-548al	0	0.000000	N
+hsa-mir-548am	0	0.000000	N
+hsa-mir-548an	0	0.000000	N
+hsa-mir-548ao	0	0.000000	N
+hsa-mir-548ap	0	0.000000	N
+hsa-mir-548aq	0	0.000000	N
+hsa-mir-548ar	0	0.000000	N
+hsa-mir-548as	0	0.000000	N
+hsa-mir-548at	0	0.000000	N
+hsa-mir-548au	4	1.758809	N
+hsa-mir-548av	0	0.000000	N
+hsa-mir-548aw	3	1.319107	N
+hsa-mir-548ax	0	0.000000	N
+hsa-mir-548ay	0	0.000000	N
+hsa-mir-548az	0	0.000000	N
+hsa-mir-548b	0	0.000000	N
+hsa-mir-548ba	0	0.000000	N
+hsa-mir-548bb	0	0.000000	N
+hsa-mir-548c	0	0.000000	N
+hsa-mir-548d-1	0	0.000000	N
+hsa-mir-548d-2	0	0.000000	N
+hsa-mir-548e	1	0.439702	N
+hsa-mir-548f-1	0	0.000000	N
+hsa-mir-548f-2	0	0.000000	N
+hsa-mir-548f-3	0	0.000000	N
+hsa-mir-548f-4	0	0.000000	N
+hsa-mir-548f-5	0	0.000000	N
+hsa-mir-548g	0	0.000000	N
+hsa-mir-548h-1	0	0.000000	N
+hsa-mir-548h-2	0	0.000000	N
+hsa-mir-548h-3	0	0.000000	N
+hsa-mir-548h-4	0	0.000000	N
+hsa-mir-548h-5	0	0.000000	N
+hsa-mir-548i-1	0	0.000000	N
+hsa-mir-548i-2	0	0.000000	N
+hsa-mir-548i-3	0	0.000000	N
+hsa-mir-548i-4	0	0.000000	N
+hsa-mir-548j	0	0.000000	N
+hsa-mir-548k	0	0.000000	N
+hsa-mir-548l	0	0.000000	N
+hsa-mir-548m	0	0.000000	N
+hsa-mir-548n	0	0.000000	N
+hsa-mir-548o	0	0.000000	N
+hsa-mir-548o-2	0	0.000000	N
+hsa-mir-548p	0	0.000000	N
+hsa-mir-548q	1	0.439702	N
+hsa-mir-548s	0	0.000000	N
+hsa-mir-548t	1	0.439702	N
+hsa-mir-548u	0	0.000000	N
+hsa-mir-548v	13	5.716130	N
+hsa-mir-548w	0	0.000000	N
+hsa-mir-548x	0	0.000000	N
+hsa-mir-548x-2	0	0.000000	N
+hsa-mir-548y	0	0.000000	N
+hsa-mir-548z	0	0.000000	N
+hsa-mir-549a	0	0.000000	N
+hsa-mir-550a-1	7	3.077916	N
+hsa-mir-550a-2	8	3.517618	N
+hsa-mir-550a-3	5	2.198512	N
+hsa-mir-550b-1	0	0.000000	N
+hsa-mir-550b-2	0	0.000000	N
+hsa-mir-551a	4	1.758809	N
+hsa-mir-551b	40	17.588092	N
+hsa-mir-552	1	0.439702	N
+hsa-mir-553	0	0.000000	N
+hsa-mir-554	0	0.000000	N
+hsa-mir-555	0	0.000000	N
+hsa-mir-556	3	1.319107	N
+hsa-mir-557	0	0.000000	N
+hsa-mir-5571	0	0.000000	N
+hsa-mir-5572	0	0.000000	N
+hsa-mir-5579	0	0.000000	N
+hsa-mir-558	0	0.000000	N
+hsa-mir-5580	0	0.000000	N
+hsa-mir-5581	1	0.439702	N
+hsa-mir-5582	0	0.000000	N
+hsa-mir-5583-1	0	0.000000	N
+hsa-mir-5583-2	0	0.000000	N
+hsa-mir-5584	3	1.319107	N
+hsa-mir-5585	0	0.000000	N
+hsa-mir-5586	1	0.439702	N
+hsa-mir-5587	0	0.000000	N
+hsa-mir-5588	0	0.000000	N
+hsa-mir-5589	0	0.000000	N
+hsa-mir-559	1	0.439702	N
+hsa-mir-5590	0	0.000000	N
+hsa-mir-5591	0	0.000000	N
+hsa-mir-561	4	1.758809	N
+hsa-mir-562	0	0.000000	N
+hsa-mir-563	0	0.000000	N
+hsa-mir-564	0	0.000000	N
+hsa-mir-566	0	0.000000	N
+hsa-mir-567	0	0.000000	N
+hsa-mir-568	0	0.000000	N
+hsa-mir-5680	1	0.439702	N
+hsa-mir-5681a	0	0.000000	N
+hsa-mir-5681b	0	0.000000	N
+hsa-mir-5682	0	0.000000	N
+hsa-mir-5683	30	13.191069	N
+hsa-mir-5684	1	0.439702	N
+hsa-mir-5685	0	0.000000	N
+hsa-mir-5687	1	0.439702	N
+hsa-mir-5688	0	0.000000	N
+hsa-mir-5689	0	0.000000	N
+hsa-mir-569	0	0.000000	N
+hsa-mir-5690	0	0.000000	N
+hsa-mir-5691	0	0.000000	N
+hsa-mir-5692a-1	0	0.000000	N
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+hsa-mir-5692b	0	0.000000	N
+hsa-mir-5692c-1	0	0.000000	N
+hsa-mir-5692c-2	0	0.000000	N
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+hsa-mir-5694	0	0.000000	N
+hsa-mir-5695	1	0.439702	N
+hsa-mir-5696	5	2.198512	N
+hsa-mir-5697	0	0.000000	N
+hsa-mir-5698	9	3.957321	N
+hsa-mir-5699	1	0.439702	N
+hsa-mir-570	0	0.000000	N
+hsa-mir-5700	0	0.000000	N
+hsa-mir-5701-1	0	0.000000	N
+hsa-mir-5701-2	0	0.000000	N
+hsa-mir-5701-3	0	0.000000	N
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+hsa-mir-5703	0	0.000000	N
+hsa-mir-5704	0	0.000000	N
+hsa-mir-5705	0	0.000000	N
+hsa-mir-5706	1	0.439702	N
+hsa-mir-5707	0	0.000000	N
+hsa-mir-5708	0	0.000000	N
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+hsa-mir-572	0	0.000000	N
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+hsa-mir-574	879	386.498325	N
+hsa-mir-575	0	0.000000	N
+hsa-mir-576	75	32.977673	N
+hsa-mir-577	176	77.387605	N
+hsa-mir-578	0	0.000000	N
+hsa-mir-5787	0	0.000000	N
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+hsa-mir-580	0	0.000000	N
+hsa-mir-581	4	1.758809	N
+hsa-mir-582	2940	1292.724774	N
+hsa-mir-583	0	0.000000	N
+hsa-mir-584	232	102.010935	N
+hsa-mir-585	10	4.397023	N
+hsa-mir-586	0	0.000000	N
+hsa-mir-587	0	0.000000	N
+hsa-mir-588	0	0.000000	N
+hsa-mir-589	111	48.806956	N
+hsa-mir-590	71	31.218864	N
+hsa-mir-591	0	0.000000	N
+hsa-mir-592	2	0.879405	N
+hsa-mir-593	0	0.000000	N
+hsa-mir-595	0	0.000000	N
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+hsa-mir-597	0	0.000000	N
+hsa-mir-598	84	36.934994	N
+hsa-mir-599	0	0.000000	N
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+hsa-mir-604	0	0.000000	N
+hsa-mir-605	2	0.879405	N
+hsa-mir-606	0	0.000000	N
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+hsa-mir-6069	0	0.000000	N
+hsa-mir-607	1	0.439702	N
+hsa-mir-6070	0	0.000000	N
+hsa-mir-6071	0	0.000000	N
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+hsa-mir-608	0	0.000000	N
+hsa-mir-6080	0	0.000000	N
+hsa-mir-6081	0	0.000000	N
+hsa-mir-6082	0	0.000000	N
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+hsa-mir-6085	0	0.000000	N
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+hsa-mir-6088	0	0.000000	N
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+hsa-mir-6089-2	0	0.000000	N
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+hsa-mir-6090	0	0.000000	N
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+hsa-mir-6126	0	0.000000	N
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+hsa-mir-6133	0	0.000000	N
+hsa-mir-6134	0	0.000000	N
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+hsa-mir-615	45	19.786604	N
+hsa-mir-616	25	10.992558	N
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+hsa-mir-618	1	0.439702	N
+hsa-mir-619	0	0.000000	N
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+hsa-mir-622	0	0.000000	N
+hsa-mir-623	0	0.000000	N
+hsa-mir-624	7	3.077916	N
+hsa-mir-625	678	298.118162	N
+hsa-mir-626	0	0.000000	N
+hsa-mir-627	6	2.638214	N
+hsa-mir-628	594	261.183169	N
+hsa-mir-629	83	36.495291	N
+hsa-mir-630	0	0.000000	N
+hsa-mir-631	0	0.000000	N
+hsa-mir-632	2	0.879405	N
+hsa-mir-633	0	0.000000	N
+hsa-mir-634	0	0.000000	N
+hsa-mir-635	0	0.000000	N
+hsa-mir-636	1	0.439702	N
+hsa-mir-637	0	0.000000	N
+hsa-mir-638	0	0.000000	N
+hsa-mir-639	4	1.758809	N
+hsa-mir-640	0	0.000000	N
+hsa-mir-641	0	0.000000	N
+hsa-mir-642a	4	1.758809	N
+hsa-mir-642b	0	0.000000	N
+hsa-mir-643	8	3.517618	N
+hsa-mir-644a	0	0.000000	N
+hsa-mir-645	0	0.000000	N
+hsa-mir-646	0	0.000000	N
+hsa-mir-647	0	0.000000	N
+hsa-mir-648	0	0.000000	N
+hsa-mir-649	0	0.000000	N
+hsa-mir-6499	26	11.432260	N
+hsa-mir-650	0	0.000000	N
+hsa-mir-6500	0	0.000000	N
+hsa-mir-6501	0	0.000000	N
+hsa-mir-6502	1	0.439702	N
+hsa-mir-6503	0	0.000000	N
+hsa-mir-6504	0	0.000000	N
+hsa-mir-6505	0	0.000000	N
+hsa-mir-6506	0	0.000000	N
+hsa-mir-6507	0	0.000000	N
+hsa-mir-6508	3	1.319107	N
+hsa-mir-6509	1	0.439702	N
+hsa-mir-651	24	10.552855	N
+hsa-mir-6510	272	119.599027	N
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+hsa-mir-6511a-2	0	0.000000	N
+hsa-mir-6511a-3	0	0.000000	N
+hsa-mir-6511a-4	0	0.000000	N
+hsa-mir-6511b-1	6	2.638214	N
+hsa-mir-6511b-2	2	0.879405	N
+hsa-mir-6512	0	0.000000	N
+hsa-mir-6513	0	0.000000	N
+hsa-mir-6514	1	0.439702	N
+hsa-mir-6515	0	0.000000	N
+hsa-mir-6516	3	1.319107	N
+hsa-mir-652	54	23.743924	N
+hsa-mir-653	49	21.545413	N
+hsa-mir-654	203	89.259568	N
+hsa-mir-655	18	7.914641	N
+hsa-mir-656	3	1.319107	N
+hsa-mir-657	0	0.000000	N
+hsa-mir-658	2	0.879405	N
+hsa-mir-659	9	3.957321	N
+hsa-mir-660	81	35.615887	N
+hsa-mir-661	0	0.000000	N
+hsa-mir-662	0	0.000000	N
+hsa-mir-663a	0	0.000000	N
+hsa-mir-663b	0	0.000000	N
+hsa-mir-664a	144	63.317132	N
+hsa-mir-664b	19	8.354344	N
+hsa-mir-665	7	3.077916	N
+hsa-mir-668	1	0.439702	N
+hsa-mir-670	0	0.000000	N
+hsa-mir-671	24	10.552855	N
+hsa-mir-6715a	2	0.879405	N
+hsa-mir-6715b	0	0.000000	N
+hsa-mir-6716	3	1.319107	N
+hsa-mir-6717	0	0.000000	N
+hsa-mir-6718	0	0.000000	N
+hsa-mir-6719	0	0.000000	N
+hsa-mir-6720	0	0.000000	N
+hsa-mir-6721	0	0.000000	N
+hsa-mir-6722	0	0.000000	N
+hsa-mir-6723	0	0.000000	N
+hsa-mir-6724-1	0	0.000000	N
+hsa-mir-6724-2	0	0.000000	N
+hsa-mir-6724-3	0	0.000000	N
+hsa-mir-6724-4	0	0.000000	N
+hsa-mir-6726	0	0.000000	N
+hsa-mir-6727	0	0.000000	N
+hsa-mir-6728	0	0.000000	N
+hsa-mir-6729	0	0.000000	N
+hsa-mir-6730	0	0.000000	N
+hsa-mir-6731	0	0.000000	N
+hsa-mir-6732	0	0.000000	N
+hsa-mir-6733	2	0.879405	N
+hsa-mir-6734	1	0.439702	N
+hsa-mir-6735	0	0.000000	N
+hsa-mir-6736	1	0.439702	N
+hsa-mir-6737	0	0.000000	N
+hsa-mir-6738	1	0.439702	N
+hsa-mir-6739	0	0.000000	N
+hsa-mir-6740	0	0.000000	N
+hsa-mir-6741	0	0.000000	N
+hsa-mir-6742	0	0.000000	N
+hsa-mir-6743	1	0.439702	N
+hsa-mir-6744	0	0.000000	N
+hsa-mir-6745	0	0.000000	N
+hsa-mir-6746	0	0.000000	N
+hsa-mir-6747	0	0.000000	N
+hsa-mir-6748	0	0.000000	N
+hsa-mir-6749	0	0.000000	N
+hsa-mir-675	7910	3478.045224	N
+hsa-mir-6750	0	0.000000	N
+hsa-mir-6751	0	0.000000	N
+hsa-mir-6752	0	0.000000	N
+hsa-mir-6753	0	0.000000	N
+hsa-mir-6754	0	0.000000	N
+hsa-mir-6755	0	0.000000	N
+hsa-mir-6756	0	0.000000	N
+hsa-mir-6757	1	0.439702	N
+hsa-mir-6758	1	0.439702	N
+hsa-mir-6759	0	0.000000	N
+hsa-mir-676	1	0.439702	N
+hsa-mir-6760	0	0.000000	N
+hsa-mir-6761	0	0.000000	N
+hsa-mir-6762	0	0.000000	N
+hsa-mir-6763	0	0.000000	N
+hsa-mir-6764	0	0.000000	N
+hsa-mir-6765	0	0.000000	N
+hsa-mir-6766	0	0.000000	N
+hsa-mir-6767	0	0.000000	N
+hsa-mir-6768	0	0.000000	N
+hsa-mir-6769a	2	0.879405	N
+hsa-mir-6769b	0	0.000000	N
+hsa-mir-6770-1	0	0.000000	N
+hsa-mir-6770-2	0	0.000000	N
+hsa-mir-6770-3	0	0.000000	N
+hsa-mir-6771	0	0.000000	N
+hsa-mir-6772	2	0.879405	N
+hsa-mir-6773	0	0.000000	N
+hsa-mir-6774	0	0.000000	N
+hsa-mir-6775	0	0.000000	N
+hsa-mir-6776	0	0.000000	N
+hsa-mir-6777	0	0.000000	N
+hsa-mir-6778	0	0.000000	N
+hsa-mir-6779	0	0.000000	N
+hsa-mir-6780a	0	0.000000	N
+hsa-mir-6780b	0	0.000000	N
+hsa-mir-6781	2	0.879405	N
+hsa-mir-6782	1	0.439702	N
+hsa-mir-6783	0	0.000000	N
+hsa-mir-6784	1	0.439702	N
+hsa-mir-6785	0	0.000000	N
+hsa-mir-6786	0	0.000000	N
+hsa-mir-6787	0	0.000000	N
+hsa-mir-6788	5	2.198512	N
+hsa-mir-6789	0	0.000000	N
+hsa-mir-6790	0	0.000000	N
+hsa-mir-6791	0	0.000000	N
+hsa-mir-6792	0	0.000000	N
+hsa-mir-6793	1	0.439702	N
+hsa-mir-6794	0	0.000000	N
+hsa-mir-6795	0	0.000000	N
+hsa-mir-6796	0	0.000000	N
+hsa-mir-6797	0	0.000000	N
+hsa-mir-6798	4	1.758809	N
+hsa-mir-6799	0	0.000000	N
+hsa-mir-6800	0	0.000000	N
+hsa-mir-6801	0	0.000000	N
+hsa-mir-6802	1	0.439702	N
+hsa-mir-6803	2	0.879405	N
+hsa-mir-6804	1	0.439702	N
+hsa-mir-6805	0	0.000000	N
+hsa-mir-6806	7	3.077916	N
+hsa-mir-6807	0	0.000000	N
+hsa-mir-6808	0	0.000000	N
+hsa-mir-6809	0	0.000000	N
+hsa-mir-6810	0	0.000000	N
+hsa-mir-6811	0	0.000000	N
+hsa-mir-6812	0	0.000000	N
+hsa-mir-6813	0	0.000000	N
+hsa-mir-6814	0	0.000000	N
+hsa-mir-6815	1	0.439702	N
+hsa-mir-6816	0	0.000000	N
+hsa-mir-6817	0	0.000000	N
+hsa-mir-6818	0	0.000000	N
+hsa-mir-6819	1	0.439702	N
+hsa-mir-6820	5	2.198512	N
+hsa-mir-6821	0	0.000000	N
+hsa-mir-6822	0	0.000000	N
+hsa-mir-6823	0	0.000000	N
+hsa-mir-6824	0	0.000000	N
+hsa-mir-6825	0	0.000000	N
+hsa-mir-6826	1	0.439702	N
+hsa-mir-6827	1	0.439702	N
+hsa-mir-6828	0	0.000000	N
+hsa-mir-6829	0	0.000000	N
+hsa-mir-6830	0	0.000000	N
+hsa-mir-6831	0	0.000000	N
+hsa-mir-6832	1	0.439702	N
+hsa-mir-6833	1	0.439702	N
+hsa-mir-6834	0	0.000000	N
+hsa-mir-6835	0	0.000000	N
+hsa-mir-6836	0	0.000000	N
+hsa-mir-6837	2	0.879405	N
+hsa-mir-6838	0	0.000000	N
+hsa-mir-6839	2	0.879405	N
+hsa-mir-6840	0	0.000000	N
+hsa-mir-6841	0	0.000000	N
+hsa-mir-6842	3	1.319107	N
+hsa-mir-6843	0	0.000000	N
+hsa-mir-6844	0	0.000000	N
+hsa-mir-6845	0	0.000000	N
+hsa-mir-6846	0	0.000000	N
+hsa-mir-6847	0	0.000000	N
+hsa-mir-6848	0	0.000000	N
+hsa-mir-6849	0	0.000000	N
+hsa-mir-6850	0	0.000000	N
+hsa-mir-6851	0	0.000000	N
+hsa-mir-6852	0	0.000000	N
+hsa-mir-6853	0	0.000000	N
+hsa-mir-6854	3	1.319107	N
+hsa-mir-6855	1	0.439702	N
+hsa-mir-6856	0	0.000000	N
+hsa-mir-6857	0	0.000000	N
+hsa-mir-6858	0	0.000000	N
+hsa-mir-6859-1	0	0.000000	N
+hsa-mir-6859-2	0	0.000000	N
+hsa-mir-6859-3	0	0.000000	N
+hsa-mir-6859-4	0	0.000000	N
+hsa-mir-6860	0	0.000000	N
+hsa-mir-6861	0	0.000000	N
+hsa-mir-6862-1	0	0.000000	N
+hsa-mir-6862-2	0	0.000000	N
+hsa-mir-6863	0	0.000000	N
+hsa-mir-6864	0	0.000000	N
+hsa-mir-6865	0	0.000000	N
+hsa-mir-6866	0	0.000000	N
+hsa-mir-6867	0	0.000000	N
+hsa-mir-6868	0	0.000000	N
+hsa-mir-6869	0	0.000000	N
+hsa-mir-6870	0	0.000000	N
+hsa-mir-6871	0	0.000000	N
+hsa-mir-6872	0	0.000000	N
+hsa-mir-6873	1	0.439702	N
+hsa-mir-6874	3	1.319107	N
+hsa-mir-6875	1	0.439702	N
+hsa-mir-6876	0	0.000000	N
+hsa-mir-6877	0	0.000000	N
+hsa-mir-6878	0	0.000000	N
+hsa-mir-6879	1	0.439702	N
+hsa-mir-6880	0	0.000000	N
+hsa-mir-6881	0	0.000000	N
+hsa-mir-6882	0	0.000000	N
+hsa-mir-6883	0	0.000000	N
+hsa-mir-6884	1	0.439702	N
+hsa-mir-6885	0	0.000000	N
+hsa-mir-6886	0	0.000000	N
+hsa-mir-6887	0	0.000000	N
+hsa-mir-6888	0	0.000000	N
+hsa-mir-6889	0	0.000000	N
+hsa-mir-6890	0	0.000000	N
+hsa-mir-6891	0	0.000000	N
+hsa-mir-6892	6	2.638214	N
+hsa-mir-6893	0	0.000000	N
+hsa-mir-6894	1	0.439702	N
+hsa-mir-6895	4	1.758809	N
+hsa-mir-7-1	63	27.701245	N
+hsa-mir-7-2	1	0.439702	N
+hsa-mir-7-3	0	0.000000	N
+hsa-mir-708	1763	775.195162	N
+hsa-mir-7106	0	0.000000	N
+hsa-mir-7107	0	0.000000	N
+hsa-mir-7108	0	0.000000	N
+hsa-mir-7109	1	0.439702	N
+hsa-mir-711	0	0.000000	N
+hsa-mir-7110	0	0.000000	N
+hsa-mir-7111	0	0.000000	N
+hsa-mir-7112	2	0.879405	N
+hsa-mir-7113	0	0.000000	N
+hsa-mir-7114	0	0.000000	N
+hsa-mir-7150	0	0.000000	N
+hsa-mir-7151	0	0.000000	N
+hsa-mir-7152	0	0.000000	N
+hsa-mir-7153	0	0.000000	N
+hsa-mir-7154	0	0.000000	N
+hsa-mir-7155	1	0.439702	N
+hsa-mir-7156	1	0.439702	N
+hsa-mir-7157	0	0.000000	N
+hsa-mir-7158	0	0.000000	N
+hsa-mir-7159	0	0.000000	N
+hsa-mir-7160	0	0.000000	N
+hsa-mir-7161	0	0.000000	N
+hsa-mir-7162	0	0.000000	N
+hsa-mir-718	0	0.000000	N
+hsa-mir-744	330	145.101760	N
+hsa-mir-7515	0	0.000000	N
+hsa-mir-758	136	59.799513	N
+hsa-mir-759	0	0.000000	N
+hsa-mir-760	3	1.319107	N
+hsa-mir-761	0	0.000000	N
+hsa-mir-762	0	0.000000	N
+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	0	0.000000	N
+hsa-mir-766	6	2.638214	N
+hsa-mir-767	2	0.879405	N
+hsa-mir-769	110	48.367253	N
+hsa-mir-770	2	0.879405	N
+hsa-mir-7702	0	0.000000	N
+hsa-mir-7703	0	0.000000	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	2	0.879405	N
+hsa-mir-7706	3	1.319107	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	0	0.000000	N
+hsa-mir-7845	2	0.879405	N
+hsa-mir-7846	0	0.000000	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	0	0.000000	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	0	0.000000	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	0	0.000000	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
+hsa-mir-8053	0	0.000000	N
+hsa-mir-8054	0	0.000000	N
+hsa-mir-8055	0	0.000000	N
+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
+hsa-mir-8061	0	0.000000	N
+hsa-mir-8062	0	0.000000	N
+hsa-mir-8063	0	0.000000	N
+hsa-mir-8064	0	0.000000	N
+hsa-mir-8065	0	0.000000	N
+hsa-mir-8066	0	0.000000	N
+hsa-mir-8067	0	0.000000	N
+hsa-mir-8068	0	0.000000	N
+hsa-mir-8069-1	0	0.000000	N
+hsa-mir-8069-2	0	0.000000	N
+hsa-mir-8070	0	0.000000	N
+hsa-mir-8071-1	0	0.000000	N
+hsa-mir-8071-2	0	0.000000	N
+hsa-mir-8072	0	0.000000	N
+hsa-mir-8073	0	0.000000	N
+hsa-mir-8074	0	0.000000	N
+hsa-mir-8075	0	0.000000	N
+hsa-mir-8076	0	0.000000	N
+hsa-mir-8077	0	0.000000	N
+hsa-mir-8078	0	0.000000	N
+hsa-mir-8079	0	0.000000	N
+hsa-mir-8080	0	0.000000	N
+hsa-mir-8081	0	0.000000	N
+hsa-mir-8082	0	0.000000	N
+hsa-mir-8083	0	0.000000	N
+hsa-mir-8084	0	0.000000	N
+hsa-mir-8085	0	0.000000	N
+hsa-mir-8086	0	0.000000	N
+hsa-mir-8087	0	0.000000	N
+hsa-mir-8088	0	0.000000	N
+hsa-mir-8089	0	0.000000	N
+hsa-mir-8485	0	0.000000	N
+hsa-mir-873	1	0.439702	N
+hsa-mir-874	87	38.254100	N
+hsa-mir-875	0	0.000000	N
+hsa-mir-876	3	1.319107	N
+hsa-mir-877	4	1.758809	N
+hsa-mir-885	1	0.439702	N
+hsa-mir-887	28	12.311665	N
+hsa-mir-888	0	0.000000	N
+hsa-mir-889	38	16.708688	N
+hsa-mir-890	0	0.000000	N
+hsa-mir-891a	3	1.319107	N
+hsa-mir-891b	0	0.000000	N
+hsa-mir-892a	0	0.000000	N
+hsa-mir-892b	0	0.000000	N
+hsa-mir-892c	0	0.000000	N
+hsa-mir-9-1	285	125.315157	N
+hsa-mir-9-2	309	135.868012	N
+hsa-mir-9-3	302	132.790096	N
+hsa-mir-920	0	0.000000	N
+hsa-mir-921	0	0.000000	N
+hsa-mir-922	0	0.000000	N
+hsa-mir-924	0	0.000000	N
+hsa-mir-92a-1	22860	10051.594668	N
+hsa-mir-92a-2	19817	8713.580557	N
+hsa-mir-92b	77	33.857077	N
+hsa-mir-93	12712	5589.495688	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	55	24.183627	N
+hsa-mir-935	1	0.439702	N
+hsa-mir-936	0	0.000000	N
+hsa-mir-937	2	0.879405	N
+hsa-mir-938	0	0.000000	N
+hsa-mir-939	2	0.879405	N
+hsa-mir-940	10	4.397023	N
+hsa-mir-941-1	0	0.000000	N
+hsa-mir-941-2	0	0.000000	N
+hsa-mir-941-3	0	0.000000	N
+hsa-mir-941-4	0	0.000000	N
+hsa-mir-941-5	0	0.000000	N
+hsa-mir-942	20	8.794046	N
+hsa-mir-943	1	0.439702	N
+hsa-mir-944	42	18.467497	N
+hsa-mir-95	5	2.198512	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	108	47.487849	N
+hsa-mir-98	144	63.317132	N
+hsa-mir-99a	9380	4124.407611	Y
+hsa-mir-99b	134478	59130.286431	N

data/gdc_data_organized/0045349c-69d9-4306-a403-c9c1fa836644/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,50 @@
+GDC_Aliquot	Chromosome	Start	End	Num_Probes	Segment_Mean
+c7617c39-43fd-42b6-9e97-27525a2df44c	1	3301765	247650984	129720	0.0149
+c7617c39-43fd-42b6-9e97-27525a2df44c	2	480597	241537572	132170	0.0135
+c7617c39-43fd-42b6-9e97-27525a2df44c	3	2170634	197812401	107138	0.0134
+c7617c39-43fd-42b6-9e97-27525a2df44c	4	1059384	187842528	103451	0.0121
+c7617c39-43fd-42b6-9e97-27525a2df44c	5	914118	2778797	888	0.0183
+c7617c39-43fd-42b6-9e97-27525a2df44c	5	2782251	2782601	3	-1.258
+c7617c39-43fd-42b6-9e97-27525a2df44c	5	2783344	54578006	27539	0.0134
+c7617c39-43fd-42b6-9e97-27525a2df44c	5	54578164	54578346	2	-2.1202
+c7617c39-43fd-42b6-9e97-27525a2df44c	5	54579739	180934240	72665	0.0136
+c7617c39-43fd-42b6-9e97-27525a2df44c	6	1011760	66625721	36682	0.0103
+c7617c39-43fd-42b6-9e97-27525a2df44c	6	66625857	66625867	2	-1.9983
+c7617c39-43fd-42b6-9e97-27525a2df44c	6	66625950	130352058	36075	0.013
+c7617c39-43fd-42b6-9e97-27525a2df44c	6	130353840	130358355	4	-1.5423
+c7617c39-43fd-42b6-9e97-27525a2df44c	6	130358820	170596889	24378	0.0115
+c7617c39-43fd-42b6-9e97-27525a2df44c	7	664936	158592540	81924	0.0119
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	667625	81360744	45132	0.0109
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	81361500	81361836	2	-1.64
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	81362264	119371790	21404	0.013
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	119373212	119373367	2	-1.5809
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	119374067	128434488	6152	0.0074
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	128434567	128435341	3	-1.5733
+c7617c39-43fd-42b6-9e97-27525a2df44c	8	128439451	144182542	9508	0.0137
+c7617c39-43fd-42b6-9e97-27525a2df44c	9	789794	138044505	68453	0.0162
+c7617c39-43fd-42b6-9e97-27525a2df44c	10	366509	133411599	81263	0.0139
+c7617c39-43fd-42b6-9e97-27525a2df44c	11	456012	134272740	77545	0.0134
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	780472	12419949	6444	0.0166
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	12426116	12426200	2	-1.4757
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	12436135	73597646	33192	0.0159
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	73597862	73603601	6	-0.9479
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	73604806	77317567	2245	0.0107
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	77318533	77318540	2	-1.7069
+c7617c39-43fd-42b6-9e97-27525a2df44c	12	77322729	132605822	32437	0.0154
+c7617c39-43fd-42b6-9e97-27525a2df44c	13	18874255	114226675	56986	0.0127
+c7617c39-43fd-42b6-9e97-27525a2df44c	14	20033191	105533894	49760	0.013
+c7617c39-43fd-42b6-9e97-27525a2df44c	15	23437561	101344124	44773	0.0149
+c7617c39-43fd-42b6-9e97-27525a2df44c	16	603333	89317317	41196	0.0136
+c7617c39-43fd-42b6-9e97-27525a2df44c	17	1074619	82959812	37272	0.0146
+c7617c39-43fd-42b6-9e97-27525a2df44c	18	326691	29390901	13184	0.014
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data/gdc_data_organized/0045349c-69d9-4306-a403-c9c1fa836644/TCGA-A1-A0SB-01A-01-TS1.ed80b57e-ce46-45d6-b8cf-bb18e254488f.svs

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data/gdc_data_organized/0045349c-69d9-4306-a403-c9c1fa836644/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<bio:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/biospecimen/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/biospecimen/2.7/TCGA_BCR.Biospecimen.xsd" schemaVersion="2.7" xmlns:bio="http://tcga.nci/bcr/xml/biospecimen/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:bio_shared="http://tcga.nci/bcr/xml/biospecimen/shared/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">A202E33F-830C-4BC1-8264-07CD02E831CA</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">117.79.0</admin:batch_number>
+        <admin:project_code xsd_ver="">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">1</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">7</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+    </admin:admin>
+    <bio:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode cde="2673794" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0045349c-69d9-4306-a403-c9c1fa836644</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A1</shared:tissue_source_site>
+        <shared:patient_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A0SB</shared:patient_id>
+        <shared:gender cde="2200604" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+        <bio:days_to_index precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">0</bio:days_to_index>
+        <bio:bcr_canonical_check>
+            <bio:bcr_patient_canonical_status cde="" xsd_ver="2.6" procurement_status="Completed" owner="">Canonical</bio:bcr_patient_canonical_status>
+        </bio:bcr_canonical_check>
+        <bio:samples>
+            <bio:sample>
+                <admin:additional_studies/>
+                <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:sample_type_id>
+                <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A</bio:vial_number>
+                <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Primary Tumor</bio:sample_type>
+                <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">120</bio:initial_weight>
+                <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">true</bio:oct_embedded>
+                <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:days_to_collection precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">764</bio:days_to_collection>
+                <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A</bio:bcr_sample_barcode>
+                <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">f66358d4-9319-4c23-983d-ab5056daacf1</bio:bcr_sample_uuid>
+                <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                <bio:portions>
+                    <bio:portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">11</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:portion_sequence>
+                        <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">29</bio:day_of_creation>
+                        <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">07</bio:month_of_creation>
+                        <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2010</bio:year_of_creation>
+                        <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">30.00</bio:weight>
+                        <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11</bio:bcr_portion_barcode>
+                        <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">dd56c847-3686-4581-adc2-0f3470a97632</bio:bcr_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                        <bio:analytes>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.86</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11D</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">111bffdf-9ffd-4e33-8e19-961b3c75d2ad</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A140</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">02</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11D-A140-02</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">cf5b6ec5-7c80-4113-be05-6e54ba99bc6d</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.08</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">5</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474810</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A141</bio:plate_id>
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+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11D-A141-01</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
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+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">6.67</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
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+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475962</bio:biospecimen_barcode_bottom>
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+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A142</bio:plate_id>
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+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11D-A142-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">db9d40fb-bfce-4c3b-a6c2-41c5c88982f1</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.08</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.20</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
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+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474714</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A145</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">05</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11D-A145-05</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">41e4e50f-cc77-4b97-8918-c632e83df75a</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">4.27</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">26.70</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">5</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475386</bio:biospecimen_barcode_bottom>
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+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">R</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">RNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2.04</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11R</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">f461ddd2-2e96-4533-a5e6-880c40525bd5</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A143</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">13</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11R-A143-13</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">859615ef-7c9a-4ab9-b9f0-0b62674b60e1</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.00</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">20.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">F</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475726</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A144</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">07</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11R-A144-07</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">a2405d64-34eb-4915-abf7-8530151d5cb0</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">4.01</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">26.70</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">F</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475590</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">mirVana (Allprep DNA) RNA</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:rna>
+                                    <bio:ratio_28s_18s cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.30</bio:ratio_28s_18s>
+                                    <bio:rinvalue cde="" xsd_ver="1.8" procurement_status="Completed" owner="">8.70</bio:rinvalue>
+                                </bio:rna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">W</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">Repli-G (Qiagen) DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11W</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">D9ACC66C-E592-4406-A3D1-3031E94FDB40</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A187</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">14</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">09</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-11W-A187-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2F329113-7292-4150-9329-965FA930353D</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.50</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">80.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">5</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0113419330</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">Repli-G</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                            </bio:analyte>
+                        </bio:analytes>
+                        <bio:slides>
+                            <bio:slide>
+                                <admin:additional_studies/>
+                                <bio:section_location cde="" xsd_ver="1.8" procurement_status="Completed" owner="">BOTTOM</bio:section_location>
+                                <bio:number_proliferating_cells cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_tumor_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_cells>
+                                <bio:percent_tumor_nuclei cde="2841225" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_nuclei>
+                                <bio:percent_normal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">4</bio:percent_normal_cells>
+                                <bio:percent_necrosis cde="2841237" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_necrosis>
+                                <bio:percent_stromal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">16</bio:percent_stromal_cells>
+                                <bio:percent_inflam_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_lymphocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1</bio:percent_lymphocyte_infiltration>
+                                <bio:percent_monocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_monocyte_infiltration>
+                                <bio:percent_granulocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_neutrophil_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_neutrophil_infiltration>
+                                <bio:percent_eosinophil_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <shared:bcr_slide_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-01-BS1</shared:bcr_slide_barcode>
+                                <shared:bcr_slide_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0af5f17f-e9a6-4424-8eae-728878063437</shared:bcr_slide_uuid>
+                                <shared:image_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-01-BS1.0af5f17f-e9a6-4424-8eae-728878063437.svs</shared:image_file_name>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                            </bio:slide>
+                            <bio:slide>
+                                <admin:additional_studies/>
+                                <bio:section_location cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TOP</bio:section_location>
+                                <bio:number_proliferating_cells cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_tumor_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">85</bio:percent_tumor_cells>
+                                <bio:percent_tumor_nuclei cde="2841225" xsd_ver="1.8" procurement_status="Completed" owner="">85</bio:percent_tumor_nuclei>
+                                <bio:percent_normal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1</bio:percent_normal_cells>
+                                <bio:percent_necrosis cde="2841237" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_necrosis>
+                                <bio:percent_stromal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">14</bio:percent_stromal_cells>
+                                <bio:percent_inflam_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_lymphocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1</bio:percent_lymphocyte_infiltration>
+                                <bio:percent_monocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_monocyte_infiltration>
+                                <bio:percent_granulocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_neutrophil_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_neutrophil_infiltration>
+                                <bio:percent_eosinophil_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <shared:bcr_slide_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-01-TS1</shared:bcr_slide_barcode>
+                                <shared:bcr_slide_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">ed80b57e-ce46-45d6-b8cf-bb18e254488f</shared:bcr_slide_uuid>
+                                <shared:image_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-A1-A0SB-01A-01-TS1.ed80b57e-ce46-45d6-b8cf-bb18e254488f.svs</shared:image_file_name>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                            </bio:slide>
+                        </bio:slides>
+                        <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                    </bio:portion>
+                </bio:portions>
+                <bio:tumor_pathology/>
+                <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
+                <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">BEC7EEA9-6DEA-4402-A3A1-07EF33D58174</bio:pathology_report_uuid>
+                <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-A1-A0SB.BEC7EEA9-6DEA-4402-A3A1-07EF33D58174.pdf</bio:pathology_report_file_name>
+                <bio:diagnostic_slides>
+                    <admin:additional_studies/>
+                    <bio:ffpe_slide_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">B34C267B-CAAA-4AB6-AD5C-276C26F997A1</bio:ffpe_slide_uuid>
+                </bio:diagnostic_slides>
+            </bio:sample>
+            <bio:sample>
+                <admin:additional_studies/>
+                <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">10</bio:sample_type_id>
+                <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">B</bio:vial_number>
+                <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Blood Derived Normal</bio:sample_type>
+                <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">false</bio:oct_embedded>
+                <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:days_to_collection precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">982</bio:days_to_collection>
+                <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B</bio:bcr_sample_barcode>
+                <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">3de77930-3151-4658-871e-20a8b7adb9e8</bio:bcr_sample_uuid>
+                <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                <bio:portions>
+                    <bio:portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:portion_sequence>
+                        <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">31</bio:day_of_creation>
+                        <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">03</bio:month_of_creation>
+                        <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_creation>
+                        <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2.00</bio:weight>
+                        <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01</bio:bcr_portion_barcode>
+                        <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">98579067-74f7-4a39-b715-9124cf358797</bio:bcr_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                        <bio:analytes>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.91</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01D</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">c8b80ad4-053c-4083-999d-d6756e94b8c3</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A140</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">02</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01D-A140-02</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1af66054-d66a-4df0-9b44-d042d0614f60</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.08</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">11</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474804</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A141</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01D-A141-01</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">c7617c39-43fd-42b6-9e97-27525a2df44c</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1.07</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">6.67</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">11</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475956</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A142</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01D-A142-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">a3254f8e-3bbd-42fc-abea-a5f25b7648b3</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.08</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.20</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">11</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474708</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">W</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">Repli-G (Qiagen) DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01W</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">6BD074B0-B5CB-4C51-AC2C-3F39EA451AAF</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A187</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">14</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">09</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SB-10B-01W-A187-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">EE50E8DB-6A4D-48CB-AC13-5EB41436B0AE</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.50</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">80.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">G</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">11</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0113419501</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">Repli-G</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                            </bio:analyte>
+                        </bio:analytes>
+                        <bio:slides/>
+                        <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                    </bio:portion>
+                </bio:portions>
+                <bio:tumor_pathology/>
+                <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
+                <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:diagnostic_slides>
+                    <admin:additional_studies/>
+                </bio:diagnostic_slides>
+            </bio:sample>
+        </bio:samples>
+    </bio:patient>
+</bio:tcga_bcr>

data/gdc_data_organized/016caf42-4e19-4444-ab5d-6cf1e76c4afa/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.grch38.seg.v2.txt

@@ -0,0 +1,541 @@
+GDC_Aliquot	Chromosome	Start	End	Num_Probes	Segment_Mean
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data/gdc_data_organized/016caf42-4e19-4444-ab5d-6cf1e76c4afa/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,69 @@
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data/gdc_data_organized/016caf42-4e19-4444-ab5d-6cf1e76c4afa/TCGA-AO-A128.03526CFD-0C3E-4ACB-AB26-3E0B0ED0ADA2.PDF

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data/gdc_data_organized/016caf42-4e19-4444-ab5d-6cf1e76c4afa/TCGA-BRCA.e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec.ascat3.allelic_specific.seg.txt

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data/gdc_data_organized/0807435a-e75e-4e04-8e45-ed0cd49a841a/TCGA-B6-A0IA-01A-01-BSA.6a397611-09c6-4511-bfa0-f423c3d35488.svs

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data/gdc_data_organized/0807435a-e75e-4e04-8e45-ed0cd49a841a/TCGA-BRCA.8b4314b3-0f2a-4451-87ff-ad498c7a1ab9.ascat3.allelic_specific.seg.txt

@@ -0,0 +1,100 @@
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data/gdc_data_organized/0cf0d67c-2f7f-42a6-94f3-407d0ec46c88/258a2c7f-93e3-4106-9435-b80bd6493e02_noid_Red.idat

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data/gdc_data_organized/0cf0d67c-2f7f-42a6-94f3-407d0ec46c88/TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_F09_1513288.grch38.seg.v2.txt

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+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr19	90910	58586487	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr20	80664	64324800	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	10336543	15019368	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	15020420	15377018	2	2	0
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	15378105	15641329	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	15641723	16409783	2	2	0
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	16418755	17098411	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	17106237	21188996	2	2	0
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	21190874	24147444	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr21	24151036	46677045	2	2	0
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chr22	15294545	50796027	4	2	2
+09a78982-3fe5-4dd0-be97-03b03a6bf683	chrX	251810	156004181	2	2	0

data/gdc_data_organized/0cf0d67c-2f7f-42a6-94f3-407d0ec46c88/bffe5d89-f332-49ac-bd92-8271144ed37d.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	330535	43021.544548	N
+hsa-let-7a-2	329419	42876.288997	Y
+hsa-let-7a-3	329636	42904.533132	N
+hsa-let-7b	455422	59276.499799	N
+hsa-let-7c	8277	1077.312007	Y
+hsa-let-7d	4083	531.432273	N
+hsa-let-7e	9308	1211.504188	N
+hsa-let-7f-1	78027	10155.783976	N
+hsa-let-7f-2	79266	10317.048876	N
+hsa-let-7g	6804	885.590298	N
+hsa-let-7i	2922	380.319643	N
+hsa-mir-1-1	5	0.650787	N
+hsa-mir-1-2	7	0.911101	N
+hsa-mir-100	13936	1813.872192	N
+hsa-mir-101-1	131021	17053.340155	N
+hsa-mir-101-2	133171	17333.178359	N
+hsa-mir-103a-1	154267	20078.976849	Y
+hsa-mir-103a-2	154385	20094.335411	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	0	0.000000	N
+hsa-mir-105-2	0	0.000000	N
+hsa-mir-106a	37	4.815820	Y
+hsa-mir-106b	3235	421.058879	N
+hsa-mir-107	691	89.938697	Y
+hsa-mir-10a	119302	15528.026707	N
+hsa-mir-10b	429960	55962.434519	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	0	0.000000	N
+hsa-mir-1180	107	13.926832	N
+hsa-mir-1181	1	0.130157	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
+hsa-mir-1184-1	0	0.000000	N
+hsa-mir-1184-2	0	0.000000	N
+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	1	0.130157	N
+hsa-mir-1185-2	0	0.000000	N
+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	2	0.260315	N
+hsa-mir-1199	0	0.000000	N
+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	1	0.130157	N
+hsa-mir-1224	2	0.260315	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	1	0.130157	N
+hsa-mir-1227	1	0.130157	N
+hsa-mir-1228	2	0.260315	N
+hsa-mir-1229	5	0.650787	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	0	0.000000	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	0	0.000000	N
+hsa-mir-1238	0	0.000000	N
+hsa-mir-124-1	0	0.000000	N
+hsa-mir-124-2	0	0.000000	N
+hsa-mir-124-3	0	0.000000	N
+hsa-mir-1243	0	0.000000	N
+hsa-mir-1244-1	0	0.000000	N
+hsa-mir-1244-2	0	0.000000	N
+hsa-mir-1244-3	0	0.000000	N
+hsa-mir-1244-4	0	0.000000	N
+hsa-mir-1245a	1	0.130157	N
+hsa-mir-1245b	1	0.130157	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	5	0.650787	N
+hsa-mir-1248	7	0.911101	N
+hsa-mir-1249	10	1.301573	N
+hsa-mir-1250	2	0.260315	N
+hsa-mir-1251	0	0.000000	N
+hsa-mir-1252	0	0.000000	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	1	0.130157	N
+hsa-mir-1254-2	3	0.390472	N
+hsa-mir-1255a	1	0.130157	N
+hsa-mir-1255b-1	0	0.000000	N
+hsa-mir-1255b-2	0	0.000000	N
+hsa-mir-1256	1	0.130157	N
+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	1	0.130157	N
+hsa-mir-125a	6404	833.527376	N
+hsa-mir-125b-1	945	122.998652	N
+hsa-mir-125b-2	982	127.814473	N
+hsa-mir-126	32365	4212.541151	N
+hsa-mir-1260a	0	0.000000	N
+hsa-mir-1260b	0	0.000000	N
+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	1	0.130157	N
+hsa-mir-1263	0	0.000000	N
+hsa-mir-1264	0	0.000000	N
+hsa-mir-1265	1	0.130157	N
+hsa-mir-1266	181	23.558472	N
+hsa-mir-1267	0	0.000000	N
+hsa-mir-1268a	0	0.000000	N
+hsa-mir-1268b	0	0.000000	N
+hsa-mir-1269a	1	0.130157	N
+hsa-mir-1269b	0	0.000000	N
+hsa-mir-127	1791	233.111732	N
+hsa-mir-1270	1	0.130157	N
+hsa-mir-1271	6	0.780944	N
+hsa-mir-1272	0	0.000000	N
+hsa-mir-1273a	0	0.000000	N
+hsa-mir-1273c	0	0.000000	N
+hsa-mir-1273d	0	0.000000	N
+hsa-mir-1273e	0	0.000000	N
+hsa-mir-1273f	0	0.000000	N
+hsa-mir-1273g	0	0.000000	N
+hsa-mir-1273h	0	0.000000	N
+hsa-mir-1275	0	0.000000	N
+hsa-mir-1276	1	0.130157	N
+hsa-mir-1277	16	2.082517	N
+hsa-mir-1278	0	0.000000	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	800	104.125843	N
+hsa-mir-128-2	485	63.126293	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
+hsa-mir-1283-1	0	0.000000	N
+hsa-mir-1283-2	0	0.000000	N
+hsa-mir-1284	12	1.561888	N
+hsa-mir-1285-1	0	0.000000	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	369	48.028045	N
+hsa-mir-1288	4	0.520629	N
+hsa-mir-1289-1	0	0.000000	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	4	0.520629	N
+hsa-mir-129-2	4	0.520629	N
+hsa-mir-1290	0	0.000000	N
+hsa-mir-1291	8	1.041258	N
+hsa-mir-1292	3	0.390472	N
+hsa-mir-1293	0	0.000000	N
+hsa-mir-1294	3	0.390472	N
+hsa-mir-1295a	11	1.431730	N
+hsa-mir-1295b	1	0.130157	N
+hsa-mir-1296	82	10.672899	N
+hsa-mir-1297	0	0.000000	N
+hsa-mir-1298	0	0.000000	N
+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	43	5.596764	N
+hsa-mir-1302-1	0	0.000000	N
+hsa-mir-1302-10	0	0.000000	N
+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
+hsa-mir-1302-7	0	0.000000	N
+hsa-mir-1302-8	0	0.000000	N
+hsa-mir-1302-9	0	0.000000	N
+hsa-mir-1303	0	0.000000	N
+hsa-mir-1304	2	0.260315	N
+hsa-mir-1305	1	0.130157	N
+hsa-mir-1306	76	9.891955	N
+hsa-mir-1307	9481	1234.021401	N
+hsa-mir-130a	611	79.526113	N
+hsa-mir-130b	71	9.241169	N
+hsa-mir-132	409	53.234337	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	8	1.041258	Y
+hsa-mir-133a-2	3	0.390472	Y
+hsa-mir-133b	2	0.260315	Y
+hsa-mir-134	310	40.348764	N
+hsa-mir-1343	2	0.260315	N
+hsa-mir-135a-1	0	0.000000	N
+hsa-mir-135a-2	0	0.000000	N
+hsa-mir-135b	519	67.551641	N
+hsa-mir-136	131	17.050607	N
+hsa-mir-137	0	0.000000	N
+hsa-mir-138-1	0	0.000000	N
+hsa-mir-138-2	1	0.130157	N
+hsa-mir-139	620	80.697529	N
+hsa-mir-140	6604	859.558837	N
+hsa-mir-141	27828	3622.017462	N
+hsa-mir-142	6077	790.965938	N
+hsa-mir-143	194285	25287.611849	N
+hsa-mir-144	122	15.879191	N
+hsa-mir-145	4839	629.831195	N
+hsa-mir-1468	30	3.904719	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	167	21.736270	N
+hsa-mir-146b	1704	221.788046	N
+hsa-mir-1470	0	0.000000	N
+hsa-mir-1471	0	0.000000	N
+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	11	1.431730	N
+hsa-mir-148a	43899	5713.775498	N
+hsa-mir-148b	1237	161.004585	N
+hsa-mir-149	137	17.831551	N
+hsa-mir-150	2190	285.044496	N
+hsa-mir-151a	15457	2011.841451	N
+hsa-mir-151b	15	1.952360	N
+hsa-mir-152	607	79.005484	N
+hsa-mir-153-1	16	2.082517	N
+hsa-mir-153-2	778	101.262383	N
+hsa-mir-1537	10	1.301573	N
+hsa-mir-1538	2	0.260315	N
+hsa-mir-1539	0	0.000000	N
+hsa-mir-154	21	2.733303	N
+hsa-mir-155	553	71.976989	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	2160	281.139777	N
+hsa-mir-15b	2347	305.479193	N
+hsa-mir-16-1	4546	591.695105	N
+hsa-mir-16-2	4529	589.482431	N
+hsa-mir-17	4540	590.914161	Y
+hsa-mir-181a-1	3154	410.516137	N
+hsa-mir-181a-2	4272	556.032004	N
+hsa-mir-181b-1	447	58.180315	N
+hsa-mir-181b-2	434	56.488270	N
+hsa-mir-181c	187	24.339416	N
+hsa-mir-181d	36	4.685663	N
+hsa-mir-182	669403	87127.689912	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	142538	18552.361828	N
+hsa-mir-184	696	90.589484	N
+hsa-mir-185	601	78.224540	N
+hsa-mir-186	1751	227.905440	N
+hsa-mir-187	3532	459.715598	N
+hsa-mir-188	6	0.780944	N
+hsa-mir-18a	26	3.384090	N
+hsa-mir-18b	1	0.130157	N
+hsa-mir-1908	0	0.000000	N
+hsa-mir-1909	0	0.000000	N
+hsa-mir-190a	46	5.987236	N
+hsa-mir-190b	203	26.421933	N
+hsa-mir-191	10510	1367.953267	N
+hsa-mir-1910	1	0.130157	N
+hsa-mir-1911	0	0.000000	N
+hsa-mir-1912	0	0.000000	N
+hsa-mir-1913	0	0.000000	N
+hsa-mir-1914	0	0.000000	N
+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	2384	310.295013	Y
+hsa-mir-193a	6289	818.559286	N
+hsa-mir-193b	1149	149.550743	N
+hsa-mir-194-1	727	94.624360	N
+hsa-mir-194-2	766	99.700495	N
+hsa-mir-195	360	46.856630	N
+hsa-mir-196a-1	26	3.384090	N
+hsa-mir-196a-2	34	4.425348	N
+hsa-mir-196b	471	61.304090	N
+hsa-mir-197	2125	276.584271	N
+hsa-mir-1972-1	0	0.000000	N
+hsa-mir-1972-2	0	0.000000	N
+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	46	5.987236	N
+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	8273	1076.791378	Y
+hsa-mir-199a-2	11767	1531.560999	Y
+hsa-mir-199b	12407	1614.861673	Y
+hsa-mir-19a	181	23.558472	N
+hsa-mir-19b-1	514	66.900854	N
+hsa-mir-19b-2	462	60.132675	N
+hsa-mir-200a	14883	1937.131159	N
+hsa-mir-200b	16589	2159.179520	N
+hsa-mir-200c	178827	23275.640241	N
+hsa-mir-202	5	0.650787	N
+hsa-mir-203a	14985	1950.407204	N
+hsa-mir-203b	21	2.733303	N
+hsa-mir-204	4	0.520629	N
+hsa-mir-205	20618	2683.583298	N
+hsa-mir-2052	0	0.000000	N
+hsa-mir-2053	0	0.000000	N
+hsa-mir-2054	0	0.000000	N
+hsa-mir-206	0	0.000000	N
+hsa-mir-208a	0	0.000000	N
+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	3564	463.880632	N
+hsa-mir-20b	100	13.015730	N
+hsa-mir-21	776765	101101.638407	N
+hsa-mir-210	2638	343.354969	N
+hsa-mir-211	0	0.000000	N
+hsa-mir-2110	10	1.301573	N
+hsa-mir-2113	0	0.000000	N
+hsa-mir-2114	6	0.780944	N
+hsa-mir-2115	3	0.390472	N
+hsa-mir-2116	3	0.390472	N
+hsa-mir-2117	2	0.260315	N
+hsa-mir-212	10	1.301573	N
+hsa-mir-214	97	12.625259	N
+hsa-mir-215	40	5.206292	Y
+hsa-mir-216a	7	0.911101	N
+hsa-mir-216b	0	0.000000	N
+hsa-mir-217	258	33.580584	N
+hsa-mir-218-1	120	15.618877	N
+hsa-mir-218-2	134	17.441079	N
+hsa-mir-219a-1	40	5.206292	N
+hsa-mir-219a-2	1	0.130157	N
+hsa-mir-219b	8	1.041258	N
+hsa-mir-22	263459	34291.113211	N
+hsa-mir-221	182	23.688629	N
+hsa-mir-222	69	8.980854	N
+hsa-mir-223	356	46.336000	N
+hsa-mir-224	130	16.920450	N
+hsa-mir-2276	0	0.000000	N
+hsa-mir-2277	7	0.911101	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	473	61.564405	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	11814	1537.678392	Y
+hsa-mir-23b	2301	299.491957	Y
+hsa-mir-23c	2	0.260315	N
+hsa-mir-24-1	1902	247.559193	N
+hsa-mir-24-2	1930	251.203597	N
+hsa-mir-2467	0	0.000000	N
+hsa-mir-25	131894	17166.967482	N
+hsa-mir-2681	0	0.000000	N
+hsa-mir-2682	0	0.000000	N
+hsa-mir-26a-1	12216	1590.001628	N
+hsa-mir-26a-2	12134	1579.328729	N
+hsa-mir-26b	9183	1195.234525	N
+hsa-mir-27a	3621	471.299599	Y
+hsa-mir-27b	3130	407.392362	Y
+hsa-mir-28	16383	2132.367115	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	9	1.171416	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	6	0.780944	N
+hsa-mir-29a	57490	7482.743419	N
+hsa-mir-29b-1	3946	513.600722	N
+hsa-mir-29b-2	4887	636.078746	Y
+hsa-mir-29c	31321	4076.656925	Y
+hsa-mir-300	0	0.000000	N
+hsa-mir-301a	51	6.638023	N
+hsa-mir-301b	3	0.390472	N
+hsa-mir-302a	0	0.000000	N
+hsa-mir-302b	0	0.000000	N
+hsa-mir-302c	0	0.000000	N
+hsa-mir-302d	0	0.000000	N
+hsa-mir-302e	0	0.000000	N
+hsa-mir-302f	0	0.000000	N
+hsa-mir-3064	2	0.260315	N
+hsa-mir-3065	186	24.209259	N
+hsa-mir-3074	179	23.298157	N
+hsa-mir-30a	550386	71636.758037	Y
+hsa-mir-30b	5041	656.122971	Y
+hsa-mir-30c-1	3001	390.602070	Y
+hsa-mir-30c-2	3897	507.223015	Y
+hsa-mir-30d	70064	9119.341362	N
+hsa-mir-30e	106404	13849.257797	Y
+hsa-mir-31	0	0.000000	N
+hsa-mir-3115	0	0.000000	N
+hsa-mir-3116-1	0	0.000000	N
+hsa-mir-3116-2	0	0.000000	N
+hsa-mir-3117	1	0.130157	N
+hsa-mir-3118-1	0	0.000000	N
+hsa-mir-3118-2	0	0.000000	N
+hsa-mir-3118-3	0	0.000000	N
+hsa-mir-3118-4	0	0.000000	N
+hsa-mir-3119-1	0	0.000000	N
+hsa-mir-3119-2	0	0.000000	N
+hsa-mir-3120	0	0.000000	N
+hsa-mir-3121	0	0.000000	N
+hsa-mir-3122	0	0.000000	N
+hsa-mir-3123	0	0.000000	N
+hsa-mir-3124	0	0.000000	N
+hsa-mir-3125	1	0.130157	N
+hsa-mir-3126	0	0.000000	N
+hsa-mir-3127	39	5.076135	N
+hsa-mir-3128	0	0.000000	N
+hsa-mir-3129	3	0.390472	N
+hsa-mir-3130-1	20	2.603146	N
+hsa-mir-3130-2	14	1.822202	N
+hsa-mir-3131	0	0.000000	N
+hsa-mir-3132	0	0.000000	N
+hsa-mir-3133	1	0.130157	N
+hsa-mir-3134	0	0.000000	N
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+hsa-mir-3144	0	0.000000	N
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+hsa-mir-3149	0	0.000000	N
+hsa-mir-3150a	2	0.260315	N
+hsa-mir-3150b	4	0.520629	N
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+hsa-mir-3158-2	2	0.260315	N
+hsa-mir-3159	1	0.130157	N
+hsa-mir-3160-1	0	0.000000	N
+hsa-mir-3160-2	1	0.130157	N
+hsa-mir-3161	0	0.000000	N
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+hsa-mir-3170	7	0.911101	N
+hsa-mir-3171	0	0.000000	N
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+hsa-mir-3175	0	0.000000	N
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+hsa-mir-3178	2	0.260315	N
+hsa-mir-3179-1	0	0.000000	N
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+hsa-mir-3179-3	0	0.000000	N
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+hsa-mir-3180-4	1	0.130157	N
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+hsa-mir-3199-2	9	1.171416	N
+hsa-mir-32	224	29.155236	N
+hsa-mir-3200	20	2.603146	N
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+hsa-mir-320a	3718	483.924857	Y
+hsa-mir-320b-1	14	1.822202	Y
+hsa-mir-320b-2	13	1.692045	Y
+hsa-mir-320c-1	7	0.911101	N
+hsa-mir-320c-2	4	0.520629	N
+hsa-mir-320d-1	0	0.000000	N
+hsa-mir-320d-2	6	0.780944	N
+hsa-mir-320e	0	0.000000	N
+hsa-mir-323a	4	0.520629	N
+hsa-mir-323b	3	0.390472	N
+hsa-mir-324	103	13.406202	N
+hsa-mir-325	0	0.000000	N
+hsa-mir-326	9	1.171416	N
+hsa-mir-328	204	26.552090	N
+hsa-mir-329-1	2	0.260315	N
+hsa-mir-329-2	1	0.130157	N
+hsa-mir-330	93	12.104629	N
+hsa-mir-331	42	5.466607	N
+hsa-mir-335	1550	201.743822	N
+hsa-mir-337	102	13.276045	N
+hsa-mir-338	7164	932.446927	N
+hsa-mir-339	254	33.059955	N
+hsa-mir-33a	59	7.679281	N
+hsa-mir-33b	10	1.301573	N
+hsa-mir-340	376	48.939146	N
+hsa-mir-342	938	122.087551	N
+hsa-mir-345	70	9.111011	N
+hsa-mir-346	0	0.000000	N
+hsa-mir-34a	592	77.053124	N
+hsa-mir-34b	9	1.171416	N
+hsa-mir-34c	41	5.336449	N
+hsa-mir-3529	0	0.000000	N
+hsa-mir-3591	0	0.000000	N
+hsa-mir-3605	10	1.301573	N
+hsa-mir-3606	0	0.000000	N
+hsa-mir-3607	542	70.545259	N
+hsa-mir-3609	0	0.000000	N
+hsa-mir-361	3876	504.489711	N
+hsa-mir-3610	8	1.041258	N
+hsa-mir-3611	0	0.000000	N
+hsa-mir-3612	0	0.000000	N
+hsa-mir-3613	90	11.714157	N
+hsa-mir-3614	18	2.342831	N
+hsa-mir-3615	9	1.171416	N
+hsa-mir-3616	0	0.000000	N
+hsa-mir-3617	0	0.000000	N
+hsa-mir-3618	1	0.130157	N
+hsa-mir-3619	3	0.390472	N
+hsa-mir-362	119	15.488719	N
+hsa-mir-3620	1	0.130157	N
+hsa-mir-3621	0	0.000000	N
+hsa-mir-3622a	2	0.260315	N
+hsa-mir-3622b	0	0.000000	N
+hsa-mir-363	28	3.644405	N
+hsa-mir-3646	0	0.000000	N
+hsa-mir-3648-1	0	0.000000	N
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+hsa-mir-3649	0	0.000000	N
+hsa-mir-3650	0	0.000000	N
+hsa-mir-3651	4	0.520629	N
+hsa-mir-3652	3	0.390472	N
+hsa-mir-3653	47	6.117393	N
+hsa-mir-3654	0	0.000000	N
+hsa-mir-3655	5	0.650787	N
+hsa-mir-3656	0	0.000000	N
+hsa-mir-3657	0	0.000000	N
+hsa-mir-3658	0	0.000000	N
+hsa-mir-3659	0	0.000000	N
+hsa-mir-365a	1035	134.712810	Y
+hsa-mir-365b	1024	133.281080	Y
+hsa-mir-3660	0	0.000000	N
+hsa-mir-3661	0	0.000000	N
+hsa-mir-3662	3	0.390472	N
+hsa-mir-3663	0	0.000000	N
+hsa-mir-3664	73	9.501483	N
+hsa-mir-3665	0	0.000000	N
+hsa-mir-3666	0	0.000000	N
+hsa-mir-3667	0	0.000000	N
+hsa-mir-3668	0	0.000000	N
+hsa-mir-367	0	0.000000	N
+hsa-mir-3670-1	0	0.000000	N
+hsa-mir-3670-2	0	0.000000	N
+hsa-mir-3670-3	0	0.000000	N
+hsa-mir-3670-4	0	0.000000	N
+hsa-mir-3671	0	0.000000	N
+hsa-mir-3672	0	0.000000	N
+hsa-mir-3674	0	0.000000	N
+hsa-mir-3675	0	0.000000	N
+hsa-mir-3677	17	2.212674	N
+hsa-mir-3678	0	0.000000	N
+hsa-mir-3679	0	0.000000	N
+hsa-mir-3680-1	0	0.000000	N
+hsa-mir-3680-2	1	0.130157	N
+hsa-mir-3681	1	0.130157	N
+hsa-mir-3682	4	0.520629	N
+hsa-mir-3683	0	0.000000	N
+hsa-mir-3684	5	0.650787	N
+hsa-mir-3685	0	0.000000	N
+hsa-mir-3686	0	0.000000	N
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+hsa-mir-3687-2	0	0.000000	N
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+hsa-mir-3689f	0	0.000000	N
+hsa-mir-369	23	2.993618	N
+hsa-mir-3690-1	3	0.390472	N
+hsa-mir-3690-2	0	0.000000	N
+hsa-mir-3691	1	0.130157	N
+hsa-mir-3692	0	0.000000	N
+hsa-mir-370	18	2.342831	N
+hsa-mir-3713	0	0.000000	N
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+hsa-mir-372	8	1.041258	N
+hsa-mir-373	0	0.000000	N
+hsa-mir-374a	8984	1169.333221	N
+hsa-mir-374b	400	52.062922	N
+hsa-mir-374c	0	0.000000	N
+hsa-mir-375	909434	118369.477800	N
+hsa-mir-376a-1	2	0.260315	N
+hsa-mir-376a-2	1	0.130157	N
+hsa-mir-376b	0	0.000000	N
+hsa-mir-376c	13	1.692045	N
+hsa-mir-377	4	0.520629	N
+hsa-mir-378a	2271	295.587238	N
+hsa-mir-378b	0	0.000000	N
+hsa-mir-378c	37	4.815820	N
+hsa-mir-378d-1	2	0.260315	N
+hsa-mir-378d-2	0	0.000000	N
+hsa-mir-378e	0	0.000000	N
+hsa-mir-378f	0	0.000000	N
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+hsa-mir-378j	0	0.000000	N
+hsa-mir-379	1681	218.794428	N
+hsa-mir-380	1	0.130157	N
+hsa-mir-381	166	21.606112	N
+hsa-mir-382	39	5.076135	N
+hsa-mir-383	0	0.000000	N
+hsa-mir-384	0	0.000000	N
+hsa-mir-3907	0	0.000000	N
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+hsa-mir-3909	3	0.390472	N
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+hsa-mir-3911	0	0.000000	N
+hsa-mir-3912	14	1.822202	N
+hsa-mir-3913-1	23	2.993618	N
+hsa-mir-3913-2	23	2.993618	N
+hsa-mir-3914-1	0	0.000000	N
+hsa-mir-3914-2	0	0.000000	N
+hsa-mir-3915	0	0.000000	N
+hsa-mir-3916	0	0.000000	N
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+hsa-mir-3918	0	0.000000	N
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+hsa-mir-3921	0	0.000000	N
+hsa-mir-3922	1	0.130157	N
+hsa-mir-3923	0	0.000000	N
+hsa-mir-3924	0	0.000000	N
+hsa-mir-3925	0	0.000000	N
+hsa-mir-3926-1	0	0.000000	N
+hsa-mir-3926-2	1	0.130157	N
+hsa-mir-3927	1	0.130157	N
+hsa-mir-3928	7	0.911101	N
+hsa-mir-3929	0	0.000000	N
+hsa-mir-3934	13	1.692045	N
+hsa-mir-3935	0	0.000000	N
+hsa-mir-3936	1	0.130157	N
+hsa-mir-3937	0	0.000000	N
+hsa-mir-3938	0	0.000000	N
+hsa-mir-3939	0	0.000000	N
+hsa-mir-3940	3	0.390472	N
+hsa-mir-3941	5	0.650787	N
+hsa-mir-3942	6	0.780944	N
+hsa-mir-3943	0	0.000000	N
+hsa-mir-3944	1	0.130157	N
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+hsa-mir-3977	0	0.000000	N
+hsa-mir-3978	0	0.000000	N
+hsa-mir-409	86	11.193528	N
+hsa-mir-410	31	4.034876	N
+hsa-mir-411	12	1.561888	N
+hsa-mir-412	3	0.390472	N
+hsa-mir-421	14	1.822202	N
+hsa-mir-422a	0	0.000000	N
+hsa-mir-423	1157	150.592001	N
+hsa-mir-424	225	29.285393	N
+hsa-mir-425	1873	243.784631	N
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+hsa-mir-433	2	0.260315	N
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+hsa-mir-4422	0	0.000000	N
+hsa-mir-4423	3	0.390472	N
+hsa-mir-4424	3	0.390472	N
+hsa-mir-4425	0	0.000000	N
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+hsa-mir-4435-2	0	0.000000	N
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+hsa-mir-4436b-2	0	0.000000	N
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+hsa-mir-4439	0	0.000000	N
+hsa-mir-4440	0	0.000000	N
+hsa-mir-4441	0	0.000000	N
+hsa-mir-4442	1	0.130157	N
+hsa-mir-4443	1	0.130157	N
+hsa-mir-4444-1	8	1.041258	N
+hsa-mir-4444-2	5	0.650787	N
+hsa-mir-4445	0	0.000000	N
+hsa-mir-4446	2	0.260315	N
+hsa-mir-4447	0	0.000000	N
+hsa-mir-4448	0	0.000000	N
+hsa-mir-4449	2	0.260315	N
+hsa-mir-4450	0	0.000000	N
+hsa-mir-4451	0	0.000000	N
+hsa-mir-4452	0	0.000000	N
+hsa-mir-4453	2	0.260315	N
+hsa-mir-4454	0	0.000000	N
+hsa-mir-4455	0	0.000000	N
+hsa-mir-4456	0	0.000000	N
+hsa-mir-4457	0	0.000000	N
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+hsa-mir-4459	0	0.000000	N
+hsa-mir-4460	0	0.000000	N
+hsa-mir-4461	0	0.000000	N
+hsa-mir-4462	0	0.000000	N
+hsa-mir-4463	0	0.000000	N
+hsa-mir-4464	0	0.000000	N
+hsa-mir-4465	0	0.000000	N
+hsa-mir-4466	0	0.000000	N
+hsa-mir-4467	0	0.000000	N
+hsa-mir-4468	0	0.000000	N
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+hsa-mir-449a	333	43.342382	N
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+hsa-mir-449c	26	3.384090	N
+hsa-mir-4500	0	0.000000	N
+hsa-mir-4501	31	4.034876	N
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+hsa-mir-450a-1	5	0.650787	N
+hsa-mir-450a-2	20	2.603146	N
+hsa-mir-450b	44	5.726921	N
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+hsa-mir-4519	2	0.260315	N
+hsa-mir-451a	317	41.259865	N
+hsa-mir-451b	0	0.000000	N
+hsa-mir-452	328	42.691596	N
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+hsa-mir-4520-2	0	0.000000	N
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+hsa-mir-4522	1	0.130157	N
+hsa-mir-4523	1	0.130157	N
+hsa-mir-4524a	2	0.260315	N
+hsa-mir-4524b	0	0.000000	N
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+hsa-mir-4530	0	0.000000	N
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+hsa-mir-454	83	10.803056	N
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+hsa-mir-4635	0	0.000000	N
+hsa-mir-4636	3	0.390472	N
+hsa-mir-4637	0	0.000000	N
+hsa-mir-4638	4	0.520629	N
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+hsa-mir-4640	2	0.260315	N
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+hsa-mir-4658	1	0.130157	N
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+hsa-mir-466	0	0.000000	N
+hsa-mir-4660	3	0.390472	N
+hsa-mir-4661	18	2.342831	N
+hsa-mir-4662a	95	12.364944	N
+hsa-mir-4662b	0	0.000000	N
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+hsa-mir-4664	1	0.130157	N
+hsa-mir-4665	0	0.000000	N
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+hsa-mir-4667	0	0.000000	N
+hsa-mir-4668	76	9.891955	N
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+hsa-mir-4676	3	0.390472	N
+hsa-mir-4677	125	16.269663	N
+hsa-mir-4678	0	0.000000	N
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+hsa-mir-4681	0	0.000000	N
+hsa-mir-4682	0	0.000000	N
+hsa-mir-4683	6	0.780944	N
+hsa-mir-4684	0	0.000000	N
+hsa-mir-4685	1	0.130157	N
+hsa-mir-4686	0	0.000000	N
+hsa-mir-4687	1	0.130157	N
+hsa-mir-4688	0	0.000000	N
+hsa-mir-4689	0	0.000000	N
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+hsa-mir-4691	0	0.000000	N
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+hsa-mir-4707	3	0.390472	N
+hsa-mir-4708	0	0.000000	N
+hsa-mir-4709	1	0.130157	N
+hsa-mir-4710	3	0.390472	N
+hsa-mir-4711	0	0.000000	N
+hsa-mir-4712	0	0.000000	N
+hsa-mir-4713	0	0.000000	N
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+hsa-mir-4723	0	0.000000	N
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+hsa-mir-4728	11	1.431730	N
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+hsa-mir-4737	0	0.000000	N
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+hsa-mir-4739	0	0.000000	N
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+hsa-mir-4741	0	0.000000	N
+hsa-mir-4742	8	1.041258	N
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+hsa-mir-4754	0	0.000000	N
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+hsa-mir-4756	2	0.260315	N
+hsa-mir-4757	2	0.260315	N
+hsa-mir-4758	2	0.260315	N
+hsa-mir-4759	0	0.000000	N
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+hsa-mir-4762	5	0.650787	N
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+hsa-mir-4787	4	0.520629	N
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+hsa-mir-527	1	0.130157	Y
+hsa-mir-532	9524	1239.618165	N
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+hsa-mir-541	0	0.000000	N
+hsa-mir-542	1058	137.706428	N
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+hsa-mir-545	1	0.130157	N
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+hsa-mir-548ae-2	0	0.000000	N
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+hsa-mir-548at	2	0.260315	N
+hsa-mir-548au	7	0.911101	N
+hsa-mir-548av	0	0.000000	N
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+hsa-mir-548ax	0	0.000000	N
+hsa-mir-548ay	1	0.130157	N
+hsa-mir-548az	0	0.000000	N
+hsa-mir-548b	0	0.000000	N
+hsa-mir-548ba	0	0.000000	N
+hsa-mir-548bb	0	0.000000	N
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+hsa-mir-550a-2	22	2.863461	N
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+hsa-mir-5698	3	0.390472	N
+hsa-mir-5699	14	1.822202	N
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+hsa-mir-628	76	9.891955	N
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+hsa-mir-642a	50	6.507865	N
+hsa-mir-642b	4	0.520629	N
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+hsa-mir-6501	4	0.520629	N
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+hsa-mir-651	59	7.679281	N
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+hsa-mir-6511b-2	5	0.650787	N
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+hsa-mir-6514	4	0.520629	N
+hsa-mir-6515	1	0.130157	N
+hsa-mir-6516	1	0.130157	N
+hsa-mir-652	324	42.170967	N
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+hsa-mir-657	0	0.000000	N
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+hsa-mir-6798	1	0.130157	N
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+hsa-mir-6803	4	0.520629	N
+hsa-mir-6804	0	0.000000	N
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+hsa-mir-6833	1	0.130157	N
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+hsa-mir-6836	0	0.000000	N
+hsa-mir-6837	2	0.260315	N
+hsa-mir-6838	0	0.000000	N
+hsa-mir-6839	2	0.260315	N
+hsa-mir-6840	0	0.000000	N
+hsa-mir-6841	0	0.000000	N
+hsa-mir-6842	12	1.561888	N
+hsa-mir-6843	0	0.000000	N
+hsa-mir-6844	1	0.130157	N
+hsa-mir-6845	1	0.130157	N
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+hsa-mir-6852	1	0.130157	N
+hsa-mir-6853	1	0.130157	N
+hsa-mir-6854	2	0.260315	N
+hsa-mir-6855	1	0.130157	N
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+hsa-mir-6857	0	0.000000	N
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+hsa-mir-6859-3	0	0.000000	N
+hsa-mir-6859-4	0	0.000000	N
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+hsa-mir-6861	0	0.000000	N
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+hsa-mir-6867	0	0.000000	N
+hsa-mir-6868	2	0.260315	N
+hsa-mir-6869	0	0.000000	N
+hsa-mir-6870	0	0.000000	N
+hsa-mir-6871	1	0.130157	N
+hsa-mir-6872	0	0.000000	N
+hsa-mir-6873	0	0.000000	N
+hsa-mir-6874	4	0.520629	N
+hsa-mir-6875	0	0.000000	N
+hsa-mir-6876	0	0.000000	N
+hsa-mir-6877	3	0.390472	N
+hsa-mir-6878	1	0.130157	N
+hsa-mir-6879	0	0.000000	N
+hsa-mir-6880	0	0.000000	N
+hsa-mir-6881	0	0.000000	N
+hsa-mir-6882	0	0.000000	N
+hsa-mir-6883	0	0.000000	N
+hsa-mir-6884	0	0.000000	N
+hsa-mir-6885	0	0.000000	N
+hsa-mir-6886	0	0.000000	N
+hsa-mir-6887	0	0.000000	N
+hsa-mir-6888	0	0.000000	N
+hsa-mir-6889	0	0.000000	N
+hsa-mir-6890	0	0.000000	N
+hsa-mir-6891	0	0.000000	N
+hsa-mir-6892	1	0.130157	N
+hsa-mir-6893	0	0.000000	N
+hsa-mir-6894	0	0.000000	N
+hsa-mir-6895	0	0.000000	N
+hsa-mir-7-1	256	33.320270	N
+hsa-mir-7-2	2	0.260315	N
+hsa-mir-7-3	2	0.260315	N
+hsa-mir-708	549	71.456360	N
+hsa-mir-7106	0	0.000000	N
+hsa-mir-7107	0	0.000000	N
+hsa-mir-7108	0	0.000000	N
+hsa-mir-7109	0	0.000000	N
+hsa-mir-711	0	0.000000	N
+hsa-mir-7110	0	0.000000	N
+hsa-mir-7111	0	0.000000	N
+hsa-mir-7112	2	0.260315	N
+hsa-mir-7113	1	0.130157	N
+hsa-mir-7114	0	0.000000	N
+hsa-mir-7150	0	0.000000	N
+hsa-mir-7151	0	0.000000	N
+hsa-mir-7152	0	0.000000	N
+hsa-mir-7153	0	0.000000	N
+hsa-mir-7154	0	0.000000	N
+hsa-mir-7155	3	0.390472	N
+hsa-mir-7156	8	1.041258	N
+hsa-mir-7157	0	0.000000	N
+hsa-mir-7158	0	0.000000	N
+hsa-mir-7159	0	0.000000	N
+hsa-mir-7160	0	0.000000	N
+hsa-mir-7161	0	0.000000	N
+hsa-mir-7162	0	0.000000	N
+hsa-mir-718	0	0.000000	N
+hsa-mir-744	123	16.009348	N
+hsa-mir-7515	0	0.000000	N
+hsa-mir-758	28	3.644405	N
+hsa-mir-759	0	0.000000	N
+hsa-mir-760	11	1.431730	N
+hsa-mir-761	0	0.000000	N
+hsa-mir-762	0	0.000000	N
+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	0	0.000000	N
+hsa-mir-766	38	4.945978	N
+hsa-mir-767	0	0.000000	N
+hsa-mir-769	207	26.942562	N
+hsa-mir-770	0	0.000000	N
+hsa-mir-7702	4	0.520629	N
+hsa-mir-7703	0	0.000000	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	8	1.041258	N
+hsa-mir-7706	11	1.431730	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	0	0.000000	N
+hsa-mir-7845	1	0.130157	N
+hsa-mir-7846	1	0.130157	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	1	0.130157	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	4	0.520629	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	0	0.000000	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
+hsa-mir-8053	0	0.000000	N
+hsa-mir-8054	0	0.000000	N
+hsa-mir-8055	0	0.000000	N
+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
+hsa-mir-8061	0	0.000000	N
+hsa-mir-8062	0	0.000000	N
+hsa-mir-8063	0	0.000000	N
+hsa-mir-8064	0	0.000000	N
+hsa-mir-8065	0	0.000000	N
+hsa-mir-8066	0	0.000000	N
+hsa-mir-8067	0	0.000000	N
+hsa-mir-8068	0	0.000000	N
+hsa-mir-8069-1	0	0.000000	N
+hsa-mir-8069-2	0	0.000000	N
+hsa-mir-8070	0	0.000000	N
+hsa-mir-8071-1	0	0.000000	N
+hsa-mir-8071-2	0	0.000000	N
+hsa-mir-8072	4	0.520629	N
+hsa-mir-8073	0	0.000000	N
+hsa-mir-8074	0	0.000000	N
+hsa-mir-8075	0	0.000000	N
+hsa-mir-8076	0	0.000000	N
+hsa-mir-8077	0	0.000000	N
+hsa-mir-8078	0	0.000000	N
+hsa-mir-8079	0	0.000000	N
+hsa-mir-8080	0	0.000000	N
+hsa-mir-8081	0	0.000000	N
+hsa-mir-8082	0	0.000000	N
+hsa-mir-8083	0	0.000000	N
+hsa-mir-8084	0	0.000000	N
+hsa-mir-8085	0	0.000000	N
+hsa-mir-8086	0	0.000000	N
+hsa-mir-8087	0	0.000000	N
+hsa-mir-8088	0	0.000000	N
+hsa-mir-8089	0	0.000000	N
+hsa-mir-8485	0	0.000000	N
+hsa-mir-873	1	0.130157	N
+hsa-mir-874	110	14.317303	N
+hsa-mir-875	0	0.000000	N
+hsa-mir-876	0	0.000000	N
+hsa-mir-877	5	0.650787	N
+hsa-mir-885	1	0.130157	N
+hsa-mir-887	57	7.418966	N
+hsa-mir-888	0	0.000000	N
+hsa-mir-889	40	5.206292	N
+hsa-mir-890	0	0.000000	N
+hsa-mir-891a	7	0.911101	N
+hsa-mir-891b	0	0.000000	N
+hsa-mir-892a	0	0.000000	N
+hsa-mir-892b	0	0.000000	N
+hsa-mir-892c	0	0.000000	N
+hsa-mir-9-1	5508	716.906432	N
+hsa-mir-9-2	5328	693.478117	N
+hsa-mir-9-3	5370	698.944724	N
+hsa-mir-920	0	0.000000	N
+hsa-mir-921	0	0.000000	N
+hsa-mir-922	0	0.000000	N
+hsa-mir-924	0	0.000000	N
+hsa-mir-92a-1	28306	3684.232653	N
+hsa-mir-92a-2	26082	3394.762808	N
+hsa-mir-92b	522	67.942113	N
+hsa-mir-93	71702	9332.539027	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	1	0.130157	N
+hsa-mir-935	1	0.130157	N
+hsa-mir-936	0	0.000000	N
+hsa-mir-937	3	0.390472	N
+hsa-mir-938	0	0.000000	N
+hsa-mir-939	6	0.780944	N
+hsa-mir-940	2	0.260315	N
+hsa-mir-941-1	0	0.000000	N
+hsa-mir-941-2	0	0.000000	N
+hsa-mir-941-3	0	0.000000	N
+hsa-mir-941-4	0	0.000000	N
+hsa-mir-941-5	0	0.000000	N
+hsa-mir-942	23	2.993618	N
+hsa-mir-943	0	0.000000	N
+hsa-mir-944	7	0.911101	N
+hsa-mir-95	58	7.549124	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	709	92.281529	N
+hsa-mir-98	563	73.278562	N
+hsa-mir-99a	2893	376.545081	N
+hsa-mir-99b	179397	23349.829904	N

data/gdc_data_organized/0cf0d67c-2f7f-42a6-94f3-407d0ec46c88/nationwidechildrens.org_biospecimen.TCGA-AC-A4ZE.xml

@@ -0,0 +1,371 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<bio:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/biospecimen/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/biospecimen/2.7/TCGA_BCR.Biospecimen.xsd" schemaVersion="2.7" xmlns:bio="http://tcga.nci/bcr/xml/biospecimen/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:bio_shared="http://tcga.nci/bcr/xml/biospecimen/shared/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">CD7E2A11-5D85-493D-8DA6-7A7819631B8D</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">379.35.0</admin:batch_number>
+        <admin:project_code xsd_ver="">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">1</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">7</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+    </admin:admin>
+    <bio:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode cde="2673794" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0CF0D67C-2F7F-42A6-94F3-407D0EC46C88</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" xsd_ver="2.4" procurement_status="Completed" owner="">AC</shared:tissue_source_site>
+        <shared:patient_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A4ZE</shared:patient_id>
+        <shared:gender cde="2200604" xsd_ver="1.8" procurement_status="Completed" owner="">FEMALE</shared:gender>
+        <bio:days_to_index precision="month" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">0</bio:days_to_index>
+        <bio:bcr_canonical_check>
+            <bio:bcr_patient_canonical_status cde="" xsd_ver="2.6" procurement_status="Completed" owner="">Canonical</bio:bcr_patient_canonical_status>
+        </bio:bcr_canonical_check>
+        <bio:samples>
+            <bio:sample>
+                <admin:additional_studies/>
+                <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:sample_type_id>
+                <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A</bio:vial_number>
+                <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Primary Tumor</bio:sample_type>
+                <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">180</bio:initial_weight>
+                <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">false</bio:oct_embedded>
+                <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:days_to_collection precision="month" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">169</bio:days_to_collection>
+                <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A</bio:bcr_sample_barcode>
+                <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2BD0E061-F49D-4F0C-A76D-1A647860E0D0</bio:bcr_sample_uuid>
+                <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                <bio:portions>
+                    <bio:shipment_portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">21</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2</bio:portion_sequence>
+                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A43F</bio:plate_id>
+                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">20</bio:center_id>
+                        <bio:shipment_portion_day_of_shipment cde="" xsd_ver="2.4" procurement_status="Completed" owner="">24</bio:shipment_portion_day_of_shipment>
+                        <bio:shipment_portion_month_of_shipment cde="" xsd_ver="2.4" procurement_status="Completed" owner="">6</bio:shipment_portion_month_of_shipment>
+                        <bio:shipment_portion_year_of_shipment cde="" xsd_ver="2.4" procurement_status="Completed" owner="">2014</bio:shipment_portion_year_of_shipment>
+                        <bio:shipment_portion_bcr_aliquot_barcode cde="" xsd_ver="2.4" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-21-A43F-20</bio:shipment_portion_bcr_aliquot_barcode>
+                        <bio:bcr_shipment_portion_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">77F57ED3-C635-4292-9D39-987F74C22793</bio:bcr_shipment_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                    </bio:shipment_portion>
+                    <bio:portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">11</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:portion_sequence>
+                        <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">20</bio:day_of_creation>
+                        <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">11</bio:month_of_creation>
+                        <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2012</bio:year_of_creation>
+                        <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">30.00</bio:weight>
+                        <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11</bio:bcr_portion_barcode>
+                        <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">F57B271F-FD4E-40B8-9A8A-3CCE591C2C84</bio:bcr_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                        <bio:analytes>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11D</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">3DDE55DA-C832-476A-8233-CCEA8E71CED5</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41E</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11D-A41E-01</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">09A78982-3FE5-4DD0-BE97-03B03A6BF683</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1.07</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">6.70</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">B</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174190442</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41F</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11D-A41F-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">BD2C5C5D-E623-4FF2-B890-D887A16D8E9F</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.08</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.20</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">B</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174189223</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41Q</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">05</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11D-A41Q-05</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">4C3893AF-7D20-4D74-8D9E-37647D042911</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.08</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">B</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174186586</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">PicoGreen</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">R</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">RNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.90</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11R</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0B1247D0-49FD-49B0-820D-555CF33BFBE7</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41B</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">07</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11R-A41B-07</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">089DA1D2-BDAC-4EF2-9D59-2D144F77D5DA</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.08</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">A</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174191615</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41G</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">13</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-11R-A41G-13</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">F76D54EF-D3E9-424D-84F6-3E4D6C503583</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.20</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">20.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">A</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174189886</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">mirVana (Allprep DNA) RNA</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:rna>
+                                    <bio:ratio_28s_18s cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.71</bio:ratio_28s_18s>
+                                    <bio:rinvalue cde="" xsd_ver="1.8" procurement_status="Completed" owner="">9.20</bio:rinvalue>
+                                </bio:rna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                        </bio:analytes>
+                        <bio:slides>
+                            <bio:slide>
+                                <admin:additional_studies/>
+                                <bio:section_location cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TOP</bio:section_location>
+                                <bio:number_proliferating_cells cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_tumor_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_cells>
+                                <bio:percent_tumor_nuclei cde="2841225" xsd_ver="1.8" procurement_status="Completed" owner="">90</bio:percent_tumor_nuclei>
+                                <bio:percent_normal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_normal_cells>
+                                <bio:percent_necrosis cde="2841237" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_necrosis>
+                                <bio:percent_stromal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">20</bio:percent_stromal_cells>
+                                <bio:percent_inflam_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_lymphocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_lymphocyte_infiltration>
+                                <bio:percent_monocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_monocyte_infiltration>
+                                <bio:percent_granulocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_neutrophil_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_neutrophil_infiltration>
+                                <bio:percent_eosinophil_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <shared:bcr_slide_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-01-TS1</shared:bcr_slide_barcode>
+                                <shared:bcr_slide_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">98A0B048-54FF-4550-8C6B-7DA21EB71123</shared:bcr_slide_uuid>
+                                <shared:image_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-AC-A4ZE-01A-01-TS1.98A0B048-54FF-4550-8C6B-7DA21EB71123.svs</shared:image_file_name>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                            </bio:slide>
+                        </bio:slides>
+                        <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                    </bio:portion>
+                </bio:portions>
+                <bio:tumor_pathology/>
+                <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
+                <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">6931CAAE-6DFE-4A61-84D5-4EC804C2F2C6</bio:pathology_report_uuid>
+                <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-AC-A4ZE.6931CAAE-6DFE-4A61-84D5-4EC804C2F2C6.pdf</bio:pathology_report_file_name>
+                <bio:diagnostic_slides>
+                    <admin:additional_studies/>
+                    <bio:ffpe_slide_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A9BB4DBC-4314-4A77-AA1C-0882DBC370F1</bio:ffpe_slide_uuid>
+                </bio:diagnostic_slides>
+            </bio:sample>
+            <bio:sample>
+                <admin:additional_studies/>
+                <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">10</bio:sample_type_id>
+                <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">B</bio:vial_number>
+                <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Blood Derived Normal</bio:sample_type>
+                <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">false</bio:oct_embedded>
+                <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:days_to_collection precision="month" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">261</bio:days_to_collection>
+                <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-10B</bio:bcr_sample_barcode>
+                <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">CAE2C01B-2A73-4F82-BAFB-1CBCBFEEDD4E</bio:bcr_sample_uuid>
+                <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                <bio:portions>
+                    <bio:portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                        <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">17</bio:day_of_creation>
+                        <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">03</bio:month_of_creation>
+                        <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_creation>
+                        <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2.00</bio:weight>
+                        <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-10B-01</bio:bcr_portion_barcode>
+                        <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">DB6D13EB-0C09-4398-82B4-22B596456812</bio:bcr_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                        <bio:analytes>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.14</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-10B-01D</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">93388CA8-9CFF-4A5D-ACC3-02B34B8D5C5B</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41E</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-10B-01D-A41E-01</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">B2604751-BAA5-4BCB-98C8-B51FDEC5AC61</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.14</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">0.94</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">6.70</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">B</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174190333</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A41F</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">28</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2014</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A4ZE-10B-01D-A41F-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">78BCD852-DDD4-4B2B-B16F-A03CA9DC7A85</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.07</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.80</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">B</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0174191137</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">PicoGreen</bio:spectrophotometer_method>
+                            </bio:analyte>
+                        </bio:analytes>
+                        <bio:slides/>
+                        <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                    </bio:portion>
+                </bio:portions>
+                <bio:tumor_pathology/>
+                <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
+                <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:diagnostic_slides>
+                    <admin:additional_studies/>
+                </bio:diagnostic_slides>
+            </bio:sample>
+        </bio:samples>
+    </bio:patient>
+</bio:tcga_bcr>

data/gdc_data_organized/0cf0d67c-2f7f-42a6-94f3-407d0ec46c88/nationwidechildrens.org_ssf.TCGA-AC-A4ZE.xml

@@ -0,0 +1,93 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ssf:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/ssf/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/ssf/2.7/TCGA_BCR.SSF.xsd" schemaVersion="2.7" xmlns:ssf="http://tcga.nci/bcr/xml/ssf/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:ssf_disease="http://tcga.nci/bcr/xml/ssf_disease/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">23CAEF6C-D8D7-4FBC-A104-41355C181E79</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">379.35.0</admin:batch_number>
+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+        <admin:patient_withdrawal>
+            <admin:withdrawn>false</admin:withdrawn>
+        </admin:patient_withdrawal>
+        <admin:program xsi:nil="true" xsd_ver="2.7"/>
+        <admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
+    </admin:admin>
+    <ssf:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AC-A4ZE</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">0CF0D67C-2F7F-42A6-94F3-407D0EC46C88</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">AC</shared:tissue_source_site>
+        <shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A4ZE</shared:patient_id>
+        <shared:hiv_status preferred_name="hiv_status" display_order="9999" cde="2180464" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+        <ssf:tumor_samples>
+            <ssf:tumor_sample>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2BD0E061-F49D-4F0C-A76D-1A647860E0D0</ssf:bcr_sample_uuid>
+                <shared:days_to_sample_procurement precision="month" xsd_ver="2.3" tier="" cde="" owner="TSS" procurement_status="Completed" preferred_name="" display_order="9999" cde_ver="">113</shared:days_to_sample_procurement>
+                <shared:method_of_sample_procurement preferred_name="tumor_sample_procurement_method" display_order="11" cde="3103514" cde_ver="1.000" xsd_ver="2.3" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191063">Simple Mastectomy</shared:method_of_sample_procurement>
+                <shared:other_method_of_sample_procurement preferred_name="cancer_procurement_method_other" display_order="12" cde="2006730" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="2191064" xsi:nil="true"/>
+                <ssf:vessel_used preferred_name="tumor_sample_vessel_used" display_order="16" cde="3081940" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191068">Cryovial</ssf:vessel_used>
+                <ssf:other_vessel_used preferred_name="tumor_sample_ship_vessel_other" display_order="17" cde="3288137" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="2191069"/>
+                <shared:maximum_tumor_dimension preferred_name="tumor_resected_max_dimension" display_order="9999" cde="64215" cde_ver="3.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                <ssf:tumor_weight preferred_name="tumor_sample_weight" display_order="23" cde="3081946" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191075">180</ssf:tumor_weight>
+                <ssf:sample_prescreened preferred_name="tumor_sample_prescreened_at_tss" display_order="19" cde="3081942" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191071">YES</ssf:sample_prescreened>
+                <shared:tumor_nuclei_percent preferred_name="tumor_nuclei_percent" display_order="24" cde="2841225" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191076">85</shared:tumor_nuclei_percent>
+                <shared:tumor_necrosis_percent preferred_name="necrosis_percent" display_order="25" cde="2841237" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191077">0</shared:tumor_necrosis_percent>
+                <ssf:days_to_pathology_review precision="month" xsd_ver="2.5" tier="2" cde="3288497" owner="TSS" procurement_status="Completed" preferred_name="tss_pathology_review_days_to" display_order="63" cde_ver="1.000">163</ssf:days_to_pathology_review>
+                <ssf:path_confirm_tumor_nuclei_metrics preferred_name="tumor_nuclei_requirements_indicator" display_order="64" cde="3288520" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191116">YES</ssf:path_confirm_tumor_nuclei_metrics>
+                <ssf:path_confirm_tumor_necrosis_metrics preferred_name="necrosis_requirements_indicator" display_order="65" cde="3288524" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191117">YES</ssf:path_confirm_tumor_necrosis_metrics>
+                <ssf:path_confirm_report_attached preferred_name="tss_pathology_submitted" display_order="66" cde="3288292" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191118">YES</ssf:path_confirm_report_attached>
+                <ssf:path_confirm_diagnosis_matching preferred_name="histologic_dx_consistent" display_order="68" cde="3288300" cde_ver="1.000" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191120">YES</ssf:path_confirm_diagnosis_matching>
+                <ssf:reason_path_confirm_diagnosis_not_matching preferred_name="histologic_dx_inconsistent_reason" display_order="69" cde="3288315" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2191121"/>
+                <ssf:top_slide_submitted preferred_name="tumor_sample_top_slide_submitted" display_order="999" cde="3081944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false">NO</ssf:top_slide_submitted>
+                <ssf:digital_image_submitted preferred_name="tumor_sample_image_submitted" display_order="999" cde="3081948" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191072">YES</ssf:digital_image_submitted>
+                <ssf:ffpe_tumor_slide_submitted preferred_name="ffpe_slide_submitted_indicator" display_order="9999" cde="3295811" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Completed" restricted="false">NO</ssf:ffpe_tumor_slide_submitted>
+                <ssf:submitted_for_lce preferred_name="tumor_sample_bcr_macrodissection" display_order="9999" cde="3288488" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <shared:other_dx preferred_name="history_other_malignancy" display_order="14" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191122">No</shared:other_dx>
+                <shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="15" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191123">No</shared:history_of_neoadjuvant_treatment>
+                <shared:consent_or_death_status preferred_name="patient_consent_status" display_order="72" cde="3288361" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191124">Consented</shared:consent_or_death_status>
+                <shared:days_to_consent precision="month" xsd_ver="2.5" tier="1" cde="3288498" owner="TSS" procurement_status="Completed" preferred_name="patient_consent_days_to" display_order="76" cde_ver="1.000">113</shared:days_to_consent>
+                <shared:country preferred_name="tumor_sample_procurement_country" display_order="13" cde="3203072" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191065">United States</shared:country>
+                <ssf_disease:disease_details/>
+                <ssf:tumor_histologies>
+                    <ssf:tumor_histology>
+                        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191055">Infiltrating Lobular Carcinoma</shared:histological_type>
+                        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                        <shared:histological_percentage preferred_name="histologic_diagnosis_percent" display_order="9999" cde="3729998" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                        <shared:tumor_morphology_percentage preferred_name="" display_order="9999" cde="3729984" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                    </ssf:tumor_histology>
+                </ssf:tumor_histologies>
+                <ssf:tumor_locations>
+                    <ssf:tumor_focality preferred_name="tumor_focality" display_order="9999" cde="3174022" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <ssf:laterality preferred_name="" display_order="9999" cde="4742852" cde_ver="" xsd_ver="2.6" tier="" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191058">Right</ssf:laterality>
+                    <ssf:tumor_location>
+                        <ssf:site_of_disease preferred_name="" display_order="9999" cde="4742851" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2191058">Breast</ssf:site_of_disease>
+                        <ssf:site_of_disease_text preferred_name="" display_order="9999" cde="4742871" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                        <ssf:site_of_disease_description preferred_name="" display_order="9999" cde="4742918" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2191058"/>
+                    </ssf:tumor_location>
+                </ssf:tumor_locations>
+            </ssf:tumor_sample>
+        </ssf:tumor_samples>
+        <ssf:normal_controls>
+            <ssf:normal_control>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">CAE2C01B-2A73-4F82-BAFB-1CBCBFEEDD4E</ssf:bcr_sample_uuid>
+                <ssf:method_of_normal_sample_procurement preferred_name="normal_control_method" display_order="50" cde="3288147" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2370659">Blood Draw</ssf:method_of_normal_sample_procurement>
+                <ssf:other_method_of_normal_sample_procurement preferred_name="normal_control_method_other" display_order="51" cde="3288151" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="2370660"/>
+                <ssf:days_to_normal_sample_procurement precision="month" xsd_ver="2.3" tier="1" cde="3288496" owner="TSS" procurement_status="Completed" preferred_name="normal_control_procurement_days_to" display_order="55" cde_ver="1.000">113</ssf:days_to_normal_sample_procurement>
+                <ssf:normal_sample_site_proximity_to_tumor preferred_name="normal_control_proximity_to_tumor" display_order="59" cde="3088708" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2370653"/>
+                <ssf:ncedna_dna_conc preferred_name="normal_control_DNA_concentration" display_order="48" cde="3288187" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2370651"/>
+                <ssf:ncedna_dna_qm preferred_name="normal_control_DNA_quant_method" display_order="47" cde="3288186" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2370650"/>
+                <ssf:ncedna_dna_qty preferred_name="normal_control_DNA_quantity" display_order="46" cde="3288185" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2370649"/>
+                <ssf:ncedna_dna_vol preferred_name="normal_control_DNA_volume" display_order="49" cde="3288188" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2370652"/>
+                <ssf:normal_control_locations>
+                    <ssf:normal_control_location>
+                        <ssf:normal_tissue_anatomic_site preferred_name="" display_order="57" cde="4132152" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2370654"/>
+                        <ssf:other_anatomic_site_normal_tissue preferred_name="normal_control_site_other" display_order="58" cde="3288189" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="2370655"/>
+                    </ssf:normal_control_location>
+                </ssf:normal_control_locations>
+            </ssf:normal_control>
+        </ssf:normal_controls>
+    </ssf:patient>
+</ssf:tcga_bcr>

data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/88c8a133-1c35-4e23-88d3-042cbca01208_noid_Grn.idat

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data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/88c8a133-1c35-4e23-88d3-042cbca01208_noid_Red.idat

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data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C09_777996.grch38.seg.v2.txt

@@ -0,0 +1,614 @@
+GDC_Aliquot	Chromosome	Start	End	Num_Probes	Segment_Mean
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	62920	2516867	470	-0.2813
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	2518272	2518955	2	-2.2592
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	2521115	16542868	8153	-0.2995
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	16544783	16721984	42	-0.7853
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	16766762	25256850	5322	-0.2739
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	25266637	25320455	24	0.4358
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	25336819	72302815	28698	-0.2694
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	72303233	72345465	46	-1.011
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	72346221	75585159	1931	-0.2432
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	75589078	75589169	2	-2.1875
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	75593824	87765801	8132	-0.2597
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	87766104	87770167	3	-2.223
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	87772782	88349701	431	-0.2643
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	88350172	88378112	28	-0.8119
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	88378268	88381281	3	0.1525
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	88385643	88397089	7	-0.8396
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	88397558	96113204	4897	-0.2631
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	96113258	96116862	2	-2.8844
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	96117148	105470754	5495	-0.2582
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	105476583	105479753	17	0.3091
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	105481433	117128020	7838	-0.2672
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	117128784	117340625	152	0.061
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	117341212	143546851	1789	-0.2359
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	1	143547055	143710798	83	-0.9225
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data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.svs

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data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/TCGA-BRCA.2e5d28ee-b288-466f-9d14-0ed674e0c6b0.ascat2.allelic_specific.seg.txt

@@ -0,0 +1,518 @@
+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
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+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr1	168696736	184210038	6	5	1
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+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr1	227805227	248930189	6	5	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr2	12784	28426109	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr2	28427310	29112977	3	3	0
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+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr2	200825019	205016092	3	2	1
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+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr3	20930	14830418	3	2	1
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+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	30694300	41741113	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	60863881	68429974	8	6	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	68430606	83290145	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	83290338	83299156	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	83299460	91801247	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	91802930	92887825	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	92890642	103034616	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	103034739	103690636	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	103691887	105183534	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	105186804	105456571	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	105457941	113790968	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	113791341	113975408	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	113976094	114819885	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	114820792	115496102	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	115496939	124481855	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	124483133	126025221	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr9	126034665	138200944	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	45792	11500826	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	11504377	11532915	1	1	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	11535667	16734065	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	16734260	16998850	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	16999164	31477616	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	31479394	33808690	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	33811892	42688924	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	42692267	109465590	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	109466216	110165059	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr10	110165830	133654968	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	198510	33038612	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	33040192	33380257	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	33383082	33659831	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	33660871	34888142	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	34888530	63181956	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	63182063	64521170	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	64521519	66324343	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	66328681	67232206	40	33	7
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	67235918	70803425	7	5	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	70803535	71302507	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	71303065	71529966	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	71532526	78846720	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	78851504	79066349	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	79066474	80606306	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	80608040	80778003	6	5	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	80778084	81489566	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	81489722	81975950	0	0	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr11	81977487	135074876	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	51460	6338356	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	6342395	6382058	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	6382073	9195754	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	9198529	9879456	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	9879671	10121430	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	10123052	11246252	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	11246680	27248414	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	27252787	27482662	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	27487410	33570642	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	33571021	34193359	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	34193496	48499140	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	48505641	48529991	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	48530644	70953913	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	70954190	71285888	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	71289950	75308950	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	75311761	75630930	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	75631385	104492085	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	104492606	104709618	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	104709903	105322058	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	105322460	106910681	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	106915397	107599169	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	107599751	120634996	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	120637623	121162377	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	121163150	128214679	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	128215665	128538688	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	128539131	131242840	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	131248112	131349507	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr12	131349736	133201603	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr13	18452809	22903468	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr13	22907940	23098227	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr13	23098920	49605725	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr13	49605931	70562267	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr13	70562317	70564932	0	0	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr13	70568082	114342922	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	18239283	19954095	6	5	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	19954424	21668616	6	3	3
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	21669297	22190419	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	22194962	22324711	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	22325865	22414944	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	22420786	22490304	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	22490342	30838730	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	30840015	31949684	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	31949778	33389953	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	33390406	33584769	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	33584850	36742476	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	36742752	36812872	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	36813588	42624484	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	42625455	43742397	6	4	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	43748597	45079373	6	3	3
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	45084200	45427459	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	45428127	56587386	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	56588103	58715270	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	58716480	58980282	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	58980303	77066000	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	77066345	77121881	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	77122260	94472133	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	94472174	94570686	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr14	94571710	106877229	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr15	19811075	23504661	5	5	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr15	23504809	34343168	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr15	34345495	47157727	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr15	47158808	47182685	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr15	47185860	101928837	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	10777	4869252	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	4869332	4960912	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	4964253	10404948	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	10405035	10538537	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	10541378	24495835	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	24496978	25057759	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	25057846	27379135	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	27379601	31915777	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	31921035	36048855	6	5	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	46441986	49924924	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	49926346	61314707	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	61315691	62158541	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	62160272	77004256	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	77004348	77332784	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	77336132	89222801	2	1	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr16	89223216	90096867	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	150733	4755617	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	4755676	5512846	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	5516429	5998670	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	5999971	15362540	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	15363274	27061802	5	3	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	27063424	30189513	4	2	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	30192710	30320734	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	30335824	30394744	3	3	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	30397615	33330590	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	33330657	33352174	5	4	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	33353870	33500514	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	33502005	39495286	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	39495863	39509301	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	39510553	40324806	48	44	4
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	40324834	40629704	8	6	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	40636744	40831508	11	9	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	40831648	49278738	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	49294560	49432418	13	13	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	49436512	54166707	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	54167101	54568742	14	11	3
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	54573122	55116420	17	15	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	55117224	56334147	3	2	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	56334747	58290942	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	58296398	58804722	30	28	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	58804954	59519803	2	2	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	59521767	60557523	38	37	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	60559822	60998253	26	23	3
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	61002305	61292104	4	3	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	61294673	61448760	26	24	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	61450926	61527567	4	4	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	61533724	63157374	30	29	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	63158335	63672794	11	9	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	63677294	64459854	38	36	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	64462382	65323132	14	12	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	65324866	65563101	35	34	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	65565474	66723831	7	5	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	66725485	66941306	23	21	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	66941980	67992898	7	5	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	67998511	68120902	18	12	6
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	68127291	68135560	16	11	5
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	68135836	68700110	21	19	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	68700570	69505997	38	36	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	69509673	69792376	18	15	3
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	69793226	70169824	39	37	2
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	70170212	70365953	66	66	0
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	70367511	70633601	44	43	1
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	70633742	71108203	6	3	3
+2e5d28ee-b288-466f-9d14-0ed674e0c6b0	chr17	71108797	73472207	7	5	2
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data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml

@@ -0,0 +1,504 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<bio:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/biospecimen/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/biospecimen/2.7/TCGA_BCR.Biospecimen.xsd" schemaVersion="2.7" xmlns:bio="http://tcga.nci/bcr/xml/biospecimen/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:bio_shared="http://tcga.nci/bcr/xml/biospecimen/shared/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">E8FEC8AB-7C06-4D53-B7B3-BD8760EF0EF1</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">117.79.0</admin:batch_number>
+        <admin:project_code xsd_ver="">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">1</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">7</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+    </admin:admin>
+    <bio:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode cde="2673794" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0dc337fa-da8b-42c4-b9a7-fb76d81c161f</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A1</shared:tissue_source_site>
+        <shared:patient_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A0SN</shared:patient_id>
+        <shared:gender cde="2200604" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+        <bio:days_to_index precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">0</bio:days_to_index>
+        <bio:bcr_canonical_check>
+            <bio:bcr_patient_canonical_status cde="" xsd_ver="2.6" procurement_status="Completed" owner="">Canonical</bio:bcr_patient_canonical_status>
+        </bio:bcr_canonical_check>
+        <bio:samples>
+            <bio:sample>
+                <admin:additional_studies/>
+                <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:sample_type_id>
+                <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A</bio:vial_number>
+                <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Primary Tumor</bio:sample_type>
+                <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">120</bio:initial_weight>
+                <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">true</bio:oct_embedded>
+                <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:days_to_collection precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">1091</bio:days_to_collection>
+                <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A</bio:bcr_sample_barcode>
+                <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">62d2a36e-feb1-4084-8111-7ea38a4e3049</bio:bcr_sample_uuid>
+                <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                <bio:portions>
+                    <bio:portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">11</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:portion_sequence>
+                        <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">29</bio:day_of_creation>
+                        <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">07</bio:month_of_creation>
+                        <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2010</bio:year_of_creation>
+                        <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">30.00</bio:weight>
+                        <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11</bio:bcr_portion_barcode>
+                        <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">c9524326-9f8e-4e4b-81f9-9c0590fed6fe</bio:bcr_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                        <bio:analytes>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.91</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11D</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2ccafbff-f79a-455d-bc7a-148966b7fb2a</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A140</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">02</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11D-A140-02</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">51e15598-1238-4403-9389-cfb11f8f26e5</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.08</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474838</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A141</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11D-A141-01</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2e5d28ee-b288-466f-9d14-0ed674e0c6b0</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1.07</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">6.67</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475741</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A142</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11D-A142-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1b8d93f4-acc2-48ee-9ca8-a327eb0463c2</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.08</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.20</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474089</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A145</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">05</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11D-A145-05</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">c8f33fc7-e44a-4ad0-b083-0871817bd86b</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.16</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">4.27</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">26.70</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475414</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">R</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">RNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.86</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11R</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">8a5beba4-822e-4df8-be6e-6922b154f970</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A143</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">13</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11R-A143-13</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">ac205666-a93a-4d87-8aa6-4f799ce58d5b</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.00</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">20.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">D</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475722</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A144</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">07</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11R-A144-07</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7fdf1ebf-149a-43d5-bae7-6e01beb647dd</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">4.01</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">26.70</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">D</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475614</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">mirVana (Allprep DNA) RNA</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:rna>
+                                    <bio:ratio_28s_18s cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2.60</bio:ratio_28s_18s>
+                                    <bio:rinvalue cde="" xsd_ver="1.8" procurement_status="Completed" owner="">9.50</bio:rinvalue>
+                                </bio:rna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:subportion_sequence>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">W</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">Repli-G (Qiagen) DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11W</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">82B94B66-4CDB-42F3-AF7B-8AFD06EDD24C</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A187</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">14</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">09</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-11W-A187-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">336DDCB9-C322-46E3-A89A-5B3CED69D9F7</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.50</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">80.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0113419535</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">Repli-G</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                            </bio:analyte>
+                        </bio:analytes>
+                        <bio:slides>
+                            <bio:slide>
+                                <admin:additional_studies/>
+                                <bio:section_location cde="" xsd_ver="1.8" procurement_status="Completed" owner="">BOTTOM</bio:section_location>
+                                <bio:number_proliferating_cells cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_tumor_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_cells>
+                                <bio:percent_tumor_nuclei cde="2841225" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_nuclei>
+                                <bio:percent_normal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2</bio:percent_normal_cells>
+                                <bio:percent_necrosis cde="2841237" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_necrosis>
+                                <bio:percent_stromal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">18</bio:percent_stromal_cells>
+                                <bio:percent_inflam_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_lymphocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">3</bio:percent_lymphocyte_infiltration>
+                                <bio:percent_monocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_monocyte_infiltration>
+                                <bio:percent_granulocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_neutrophil_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_neutrophil_infiltration>
+                                <bio:percent_eosinophil_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <shared:bcr_slide_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-01-BS1</shared:bcr_slide_barcode>
+                                <shared:bcr_slide_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">aae55eae-a830-45ec-afd5-8413b7d7bb87</shared:bcr_slide_uuid>
+                                <shared:image_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-01-BS1.aae55eae-a830-45ec-afd5-8413b7d7bb87.svs</shared:image_file_name>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                            </bio:slide>
+                            <bio:slide>
+                                <admin:additional_studies/>
+                                <bio:section_location cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TOP</bio:section_location>
+                                <bio:number_proliferating_cells cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_tumor_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_cells>
+                                <bio:percent_tumor_nuclei cde="2841225" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_nuclei>
+                                <bio:percent_normal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2</bio:percent_normal_cells>
+                                <bio:percent_necrosis cde="2841237" xsd_ver="1.8" procurement_status="Completed" owner="">1</bio:percent_necrosis>
+                                <bio:percent_stromal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">17</bio:percent_stromal_cells>
+                                <bio:percent_inflam_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_lymphocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">3</bio:percent_lymphocyte_infiltration>
+                                <bio:percent_monocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_monocyte_infiltration>
+                                <bio:percent_granulocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:percent_neutrophil_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_neutrophil_infiltration>
+                                <bio:percent_eosinophil_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <shared:bcr_slide_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-01-TS1</shared:bcr_slide_barcode>
+                                <shared:bcr_slide_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">ae0aafc3-dbcf-4e93-b817-974263ade19a</shared:bcr_slide_uuid>
+                                <shared:image_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-A1-A0SN-01A-01-TS1.ae0aafc3-dbcf-4e93-b817-974263ade19a.svs</shared:image_file_name>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                            </bio:slide>
+                        </bio:slides>
+                        <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                    </bio:portion>
+                </bio:portions>
+                <bio:tumor_pathology/>
+                <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
+                <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D0269758-EFAE-4EBA-8CCF-4A6CF4D4B35A</bio:pathology_report_uuid>
+                <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-A1-A0SN.D0269758-EFAE-4EBA-8CCF-4A6CF4D4B35A.pdf</bio:pathology_report_file_name>
+                <bio:diagnostic_slides>
+                    <admin:additional_studies/>
+                    <bio:ffpe_slide_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540</bio:ffpe_slide_uuid>
+                </bio:diagnostic_slides>
+            </bio:sample>
+            <bio:sample>
+                <admin:additional_studies/>
+                <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">10</bio:sample_type_id>
+                <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">B</bio:vial_number>
+                <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Blood Derived Normal</bio:sample_type>
+                <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">false</bio:oct_embedded>
+                <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:days_to_collection precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">1309</bio:days_to_collection>
+                <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B</bio:bcr_sample_barcode>
+                <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">903f65bc-a740-4571-bfe0-5aa0895d714a</bio:bcr_sample_uuid>
+                <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                <bio:portions>
+                    <bio:portion>
+                        <admin:additional_studies/>
+                        <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:portion_number>
+                        <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:portion_sequence>
+                        <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">31</bio:day_of_creation>
+                        <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">03</bio:month_of_creation>
+                        <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_creation>
+                        <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2.00</bio:weight>
+                        <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01</bio:bcr_portion_barcode>
+                        <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1dd33160-4b78-4f0d-9038-4939eac4be21</bio:bcr_portion_uuid>
+                        <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
+                        <bio:analytes>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.18</bio:concentration>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.91</bio:a260_a280_ratio>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01D</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">8a110b31-3321-4abb-aaab-0d8746aba636</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A140</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">02</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01D-A140-02</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">6f40b209-f908-4fc5-963c-c87879da4b8d</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.18</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2.34</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474832</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A141</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01D-A141-01</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">109f2585-3778-485a-bdf6-119228ffb1ed</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.18</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1.20</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">6.67</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100475984</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A142</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">06</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">04</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01D-A142-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">14f376b8-4bd0-4931-9ddd-0b4b1cb89137</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.09</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.60</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0100474736</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
+                            </bio:analyte>
+                            <bio:analyte>
+                                <admin:additional_studies/>
+                                <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                                <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">W</bio:analyte_type_id>
+                                <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">Repli-G (Qiagen) DNA</bio:analyte_type>
+                                <bio:concentration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
+                                <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01W</bio:bcr_analyte_barcode>
+                                <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">13D4258D-2E7E-4C19-A00F-8958FA82611F</bio:bcr_analyte_uuid>
+                                <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                <bio:aliquots>
+                                    <bio:aliquot>
+                                        <admin:additional_studies/>
+                                        <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A187</bio:plate_id>
+                                        <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
+                                        <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">14</bio:day_of_shipment>
+                                        <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">09</bio:month_of_shipment>
+                                        <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2011</bio:year_of_shipment>
+                                        <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-A1-A0SN-10B-01W-A187-09</bio:bcr_aliquot_barcode>
+                                        <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">93079B39-ACFE-455B-BEC1-FAE6DBFCD02F</bio:bcr_aliquot_uuid>
+                                        <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.50</bio:concentration>
+                                        <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:quantity>
+                                        <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">80.00</bio:volume>
+                                        <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">E</bio:plate_row>
+                                        <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">7</bio:plate_column>
+                                        <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0113419529</bio:biospecimen_barcode_bottom>
+                                        <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
+                                        <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
+                                    </bio:aliquot>
+                                </bio:aliquots>
+                                <bio:protocols>
+                                    <bio:protocol>
+                                        <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">Repli-G</bio:experimental_protocol_type>
+                                        <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                        <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                                    </bio:protocol>
+                                </bio:protocols>
+                                <bio:dna>
+                                    <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
+                                    <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
+                                </bio:dna>
+                                <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                            </bio:analyte>
+                        </bio:analytes>
+                        <bio:slides/>
+                        <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
+                    </bio:portion>
+                </bio:portions>
+                <bio:tumor_pathology/>
+                <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
+                <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
+                <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Not Available" owner=""/>
+                <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
+                <bio:diagnostic_slides>
+                    <admin:additional_studies/>
+                </bio:diagnostic_slides>
+            </bio:sample>
+        </bio:samples>
+    </bio:patient>
+</bio:tcga_bcr>

data/gdc_data_organized/0dc337fa-da8b-42c4-b9a7-fb76d81c161f/nationwidechildrens.org_clinical.TCGA-A1-A0SN.xml

@@ -0,0 +1,275 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<brca:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/brca/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/brca/2.7/TCGA_BCR.BRCA_Clinical.xsd" schemaVersion="2.7" xmlns:brca="http://tcga.nci/bcr/xml/clinical/brca/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:brca_shared="http://tcga.nci/bcr/xml/clinical/brca/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:brca_nte="http://tcga.nci/bcr/xml/clinical/brca/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">991FCC27-32FE-4340-8745-4F5FCAAF45CB</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">117.79.0</admin:batch_number>
+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+        <admin:patient_withdrawal>
+            <admin:withdrawn>false</admin:withdrawn>
+        </admin:patient_withdrawal>
+        <admin:program xsi:nil="true" xsd_ver="2.7"/>
+        <admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
+    </admin:admin>
+    <brca:patient>
+        <admin:additional_studies/>
+        <clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950835">Breast</clin_shared:tumor_tissue_site>
+        <clin_shared:tumor_tissue_site_other preferred_name="site_of_primary_tumor_other" display_order="999" cde="2584114" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+        <shared:other_dx preferred_name="history_other_malignancy" display_order="14" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950825">No</shared:other_dx>
+        <shared:gender preferred_name="gender" display_order="10" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950821">FEMALE</shared:gender>
+        <clin_shared:vital_status preferred_name="vital_status" display_order="17" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950827">Alive</clin_shared:vital_status>
+        <clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="9" cde_ver="1.000">-18401</clin_shared:days_to_birth>
+        <clin_shared:days_to_last_known_alive precision="day" xsd_ver="2.1" tier="2" cde="" owner="TSS" procurement_status="Not Available" preferred_name="" display_order="9999" cde_ver=""/>
+        <clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="25" cde_ver="1.000"/>
+        <clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="21" cde_ver="1.000">1196</clin_shared:days_to_last_followup>
+        <clin_shared:race_list>
+            <clin_shared:race preferred_name="race" display_order="12" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950823">WHITE</clin_shared:race>
+        </clin_shared:race_list>
+        <shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A1-A0SN</shared:bcr_patient_barcode>
+        <shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A1</shared:tissue_source_site>
+        <shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A0SN</shared:patient_id>
+        <shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">0dc337fa-da8b-42c4-b9a7-fb76d81c161f</shared:bcr_patient_uuid>
+        <shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="15" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950826">No</shared:history_of_neoadjuvant_treatment>
+        <clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="72" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
+        <clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C50.9</clin_shared:icd_o_3_site>
+        <clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8500/3</clin_shared:icd_o_3_histology>
+        <clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C50.9</clin_shared:icd_10>
+        <clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
+        <clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">50</clin_shared:age_at_initial_pathologic_diagnosis>
+        <clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="34" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950841">2007</clin_shared:year_of_initial_pathologic_diagnosis>
+        <clin_shared:ethnicity preferred_name="ethnicity" display_order="13" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950824">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
+        <clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="16" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950834">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
+        <clin_shared:primary_lymph_node_presentation_assessment preferred_name="lymph_nodes_examined" display_order="47" cde="2200396" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950853">YES</clin_shared:primary_lymph_node_presentation_assessment>
+        <clin_shared:lymph_node_examined_count preferred_name="lymph_nodes_examined_count" display_order="48" cde="3" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950854">13</clin_shared:lymph_node_examined_count>
+        <brca_shared:er_detection_method_text preferred_name="er_positivity_method" display_order="63" cde="69" cde_ver="2.310" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950869"/>
+        <brca_shared:pgr_detection_method_text preferred_name="pr_positivity_define_method" display_order="69" cde="785" cde_ver="2.310" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950875"/>
+        <brca:anatomic_neoplasm_subdivisions>
+            <clin_shared:anatomic_neoplasm_subdivision preferred_name="anatomic_organ_subdivision" display_order="9999" cde="3108203" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950836">Left</clin_shared:anatomic_neoplasm_subdivision>
+        </brca:anatomic_neoplasm_subdivisions>
+        <brca_shared:her2_neu_chromosone_17_signal_ratio_value preferred_name="her2_cent17_ratio" display_order="79" cde="2497552" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950885"/>
+        <brca:axillary_lymph_node_stage_method_type preferred_name="axillary_staging_method" display_order="44" cde="2516112" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950850">Sentinel lymph node biopsy plus axillary dissection</brca:axillary_lymph_node_stage_method_type>
+        <brca:axillary_lymph_node_stage_other_method_descriptive_text preferred_name="axillary_staging_method_other" display_order="45" cde="3124496" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950851"/>
+        <brca:breast_carcinoma_surgical_procedure_name preferred_name="surgical_procedure_first" display_order="38" cde="2739580" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950844">Lumpectomy</brca:breast_carcinoma_surgical_procedure_name>
+        <brca:breast_neoplasm_other_surgical_procedure_descriptive_text preferred_name="surgery_for_positive_margins_other" display_order="42" cde="3124493" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="950848" xsi:nil="true"/>
+        <brca:breast_carcinoma_primary_surgical_procedure_name preferred_name="surgery_for_positive_margins" display_order="41" cde="1218" cde_ver="3.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950847"/>
+        <brca:surgical_procedure_purpose_other_text preferred_name="first_surgical_procedure_other" display_order="39" cde="3020338" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950845"/>
+        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950837">Infiltrating Ductal Carcinoma</shared:histological_type>
+        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="950838" xsi:nil="true"/>
+        <clin_shared:menopause_status preferred_name="menopause_status" display_order="11" cde="2957270" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950822">Post (prior bilateral ovariectomy OR >12 mo since LMP with no prior hysterectomy)</clin_shared:menopause_status>
+        <brca_shared:breast_carcinoma_progesterone_receptor_status preferred_name="pr_status_by_ihc" display_order="64" cde="2957357" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950870">Positive</brca_shared:breast_carcinoma_progesterone_receptor_status>
+        <brca:cytokeratin_immunohistochemistry_staining_method_micrometastasis_indicator preferred_name="micromet_detection_by_ihc" display_order="46" cde="3086152" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950852"/>
+        <brca:breast_carcinoma_immunohistochemistry_er_pos_finding_scale preferred_name="er_positivity_scale_used" display_order="60" cde="3203081" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950866"/>
+        <brca_shared:immunohistochemistry_positive_cell_score preferred_name="er_ihc_score" display_order="61" cde="2230166" cde_ver="3.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950867"/>
+        <brca_shared:her2_immunohistochemistry_level_result preferred_name="her2_ihc_score" display_order="72" cde="2178402" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950878"/>
+        <brca:breast_cancer_surgery_margin_status preferred_name="margin_status_reexcision" display_order="43" cde="2241252" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950849"/>
+        <clin_shared:margin_status preferred_name="margin_status" display_order="40" cde="3114007" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950846">Negative</clin_shared:margin_status>
+        <clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="36" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950842">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
+        <clin_shared:init_pathology_dx_method_other preferred_name="method_initial_path_dx_other" display_order="37" cde="2757948" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="950843" xsi:nil="true"/>
+        <brca_shared:lab_procedure_her2_neu_in_situ_hybrid_outcome_type preferred_name="her2_fish_status" display_order="75" cde="2854089" cde_ver="1.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Not Evaluated" restricted="false" source_system_identifier="950881"/>
+        <brca_shared:breast_carcinoma_estrogen_receptor_status preferred_name="er_status_by_ihc" display_order="58" cde="2957359" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950864">Positive</brca_shared:breast_carcinoma_estrogen_receptor_status>
+        <brca_shared:lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="her2_status_by_ihc" display_order="70" cde="2957563" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950876">Positive</brca_shared:lab_proc_her2_neu_immunohistochemistry_receptor_status>
+        <clin_shared:number_of_lymphnodes_positive_by_ihc preferred_name="lymph_nodes_examined_ihc_count" display_order="50" cde="3086383" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950856"/>
+        <clin_shared:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="49" cde="3086388" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950855">4</clin_shared:number_of_lymphnodes_positive_by_he>
+        <brca_shared:pos_finding_progesterone_receptor_other_measurement_scale_text preferred_name="pr_positivity_scale_other" display_order="68" cde="3086857" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950874"/>
+        <brca_shared:positive_finding_estrogen_receptor_other_measurement_scale_text preferred_name="er_positivity_scale_other" display_order="62" cde="3086851" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950868"/>
+        <brca_shared:her2_erbb_pos_finding_cell_percent_category preferred_name="her2_ihc_percent_positive" display_order="71" cde="3086980" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950877"/>
+        <brca_shared:pos_finding_her2_erbb2_other_measurement_scale_text preferred_name="her2_positivity_scale_other" display_order="73" cde="3087479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950879"/>
+        <brca_shared:her2_erbb_method_calculation_method_text preferred_name="her2_positivity_method_text" display_order="74" cde="3087487" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950880"/>
+        <brca_shared:her2_neu_and_centromere_17_copy_number_analysis_input_total_number_count preferred_name="her2_and_cent17_cells_count" display_order="78" cde="3087902" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950884"/>
+        <brca_shared:her2_and_centromere_17_positive_finding_other_measurement_scale_text preferred_name="her2_and_cent17_scale_other" display_order="80" cde="3087923" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950886"/>
+        <brca_shared:her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="her2_fish_method" display_order="81" cde="3087929" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950887"/>
+        <clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="4" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950816">NO</clin_shared:tissue_prospective_collection_indicator>
+        <clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="5" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950817">YES</clin_shared:tissue_retrospective_collection_indicator>
+        <brca_shared:fluorescence_in_situ_hybridization_diagnostic_procedure_chromosome_17_signal_result_range preferred_name="cent17_copy_number" display_order="77" cde="3104295" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950883"/>
+        <brca:first_nonlymph_node_metastasis_anatomic_sites>
+            <clin_shared:metastatic_site_at_diagnosis preferred_name="metastasis_site" display_order="56" cde="3124499" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950862"/>
+            <clin_shared:metastatic_site_at_diagnosis_other preferred_name="metastasis_site_other" display_order="57" cde="3124503" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950863"/>
+        </brca:first_nonlymph_node_metastasis_anatomic_sites>
+        <brca_shared:er_level_cell_percentage_category preferred_name="er_status_ihc_Percent_Positive" display_order="59" cde="3128341" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950865">90-99%</brca_shared:er_level_cell_percentage_category>
+        <brca_shared:progesterone_receptor_level_cell_percent_category preferred_name="pr_status_ihc_percent_positive" display_order="65" cde="3128342" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950871">60-69%</brca_shared:progesterone_receptor_level_cell_percent_category>
+        <brca:distant_metastasis_present_ind2 preferred_name="metastatic_tumor_indicator" display_order="999" cde="2194698" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950888"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status preferred_name="nte_er_status" display_order="97" cde="3131865" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950889"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_level_cell_percent_category preferred_name="nte_er_status_ihc__positive" display_order="98" cde="3131869" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950890"/>
+        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_pos_cell_score preferred_name="nte_er_ihc_intensity_score" display_order="100" cde="3131873" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950892"/>
+        <brca_shared:pos_finding_metastatic_breast_carcinoma_estrogen_receptor_other_measuremenet_scale_text preferred_name="nte_er_positivity_other_scale" display_order="101" cde="3131877" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950893"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_detection_method_text preferred_name="nte_er_positivity_define_method" display_order="102" cde="3131881" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950894"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status preferred_name="nte_pr_status_by_ihc" display_order="103" cde="3131884" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950895"/>
+        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="nte_her2_status" display_order="109" cde="3131997" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950901"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_level_cell_percent_category preferred_name="nte_pr_status_ihc__positive" display_order="104" cde="3131891" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950896"/>
+        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_pr_pos_cell_score preferred_name="nte_pr_ihc_intensity_score" display_order="106" cde="3131988" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950898"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_progesterone_receptor_other_measure_scale_text preferred_name="nte_pr_positivity_other_scale" display_order="107" cde="3131992" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950899"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_detection_method_text preferred_name="nte_pr_positivity_define_method" display_order="108" cde="3131993" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950900"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_cell_percent_category preferred_name="nte_her2_status_ihc__positive" display_order="110" cde="3132322" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950902"/>
+        <brca_shared:metastatic_breast_carcinoma_erbb2_immunohistochemistry_level_result preferred_name="nte_her2_positivity_ihc_score" display_order="111" cde="3132444" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950903"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_her2_erbb2_other_measure_scale_text preferred_name="nte_her2_positivity_other_scale" display_order="112" cde="3132448" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950904"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_method_calculation_method_text preferred_name="nte_her2_positivity_method" display_order="113" cde="3132452" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950905"/>
+        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_in_situ_hybridization_outcome_type preferred_name="nte_her2_fish_status" display_order="114" cde="3132455" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950906"/>
+        <brca_shared:metastatic_breast_carcinoma_fluorescence_in_situ_hybridization_diagnostic_proc_centromere_17_signal_result_range preferred_name="nte_cent_17_signal_number" display_order="116" cde="3132887" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950908"/>
+        <brca_shared:her2_neu_and_centromere_17_copy_number_metastatic_breast_carcinoma_analysis_input_total_number_count preferred_name="her2_cent17_counted_cells_count" display_order="117" cde="3132899" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950909"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_neu_chromosone_17_signal_ratio_value preferred_name="nte_cent_17_her2_ratio" display_order="118" cde="3132903" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950910"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_other_scale_measurement_text preferred_name="nte_cent17_her2_other_scale" display_order="119" cde="3132907" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950911"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="nte_her2_fish_define_method" display_order="120" cde="3132910" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950912"/>
+        <brca_shared:her2_neu_metastatic_breast_carcinoma_copy_analysis_input_total_number preferred_name="nte_her2_signal_number" display_order="115" cde="3133734" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950907"/>
+        <brca_shared:her2_neu_breast_carcinoma_copy_analysis_input_total_number preferred_name="her2_copy_number" display_order="76" cde="3133738" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950882"/>
+        <brca:breast_carcinoma_immunohistochemistry_progesterone_receptor_pos_finding_scale preferred_name="pr_positivity_scale_used" display_order="66" cde="3203083" cde_ver="1.000" xsd_ver="2.4.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950872"/>
+        <brca_shared:breast_carcinoma_immunohistochemistry_pos_cell_score preferred_name="pr_positivity_ihc_intensity_score" display_order="67" cde="3133874" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950873"/>
+        <shared_stage:stage_event system="AJCC">
+            <shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="51" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950857">6th</shared_stage:system_version>
+            <shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="55" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950861">Stage IIA</shared_stage:pathologic_stage>
+            <shared_stage:tnm_categories>
+                <shared_stage:clinical_categories>
+                    <shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                    <shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                </shared_stage:clinical_categories>
+                <shared_stage:pathologic_categories>
+                    <shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="52" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950858">T1c</shared_stage:pathologic_T>
+                    <shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="53" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950859">N1</shared_stage:pathologic_N>
+                    <shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="54" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950860">MX</shared_stage:pathologic_M>
+                </shared_stage:pathologic_categories>
+            </shared_stage:tnm_categories>
+            <shared_stage:psa>
+                <shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="9999" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Not Applicable" preferred_name="days_to_psa_most_recent" display_order="9999" cde_ver="1.000"/>
+            </shared_stage:psa>
+            <shared_stage:gleason_grading>
+                <shared_stage:gleason_score preferred_name="gleason_score" display_order="9999" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="9999" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9999" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="9999" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            </shared_stage:gleason_grading>
+            <shared_stage:ann_arbor>
+                <shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            </shared_stage:ann_arbor>
+            <shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+        </shared_stage:stage_event>
+        <clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="27" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="26" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <brca_nte:new_tumor_events>
+            <nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="82" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        </brca_nte:new_tumor_events>
+        <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950814">23</clin_shared:day_of_form_completion>
+        <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950813">5</clin_shared:month_of_form_completion>
+        <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950815">2011</clin_shared:year_of_form_completion>
+        <brca:follow_ups/>
+        <rx:drugs>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950918"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A1-A0SN-D12066</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">46FC4D8A-2EEC-454B-BC8F-447030B0D761</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950927"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950928"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950925"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950926"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950924">4</rx:number_cycles>
+                <rx:days_to_drug_therapy_start precision="month" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">87</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="year" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">179</rx:days_to_drug_therapy_end>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950921">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950922"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950923">ac</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950919">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="950920"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950929">IV</rx:route_of_administration>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950933">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950916">23</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950915">5</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950917">2011</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950942"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A1-A0SN-D12067</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">6BE7B34C-4BFD-4AFD-B4FA-EF6DFA0CA6D0</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950951"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950952"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950949"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950950"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950948"/>
+                <rx:days_to_drug_therapy_start precision="year" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">179</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="month" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">270</rx:days_to_drug_therapy_end>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950945">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950946"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950947">taxol</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950943">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="950944"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950953">IV</rx:route_of_administration>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950957">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950940">23</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950939">5</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950941">2011</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958764"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-A1-A0SN-D12157</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">4E133864-9EDE-40C9-91C3-E5E05D9D8545</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958773"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958774"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958771"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958772"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958770"/>
+                <rx:days_to_drug_therapy_start precision="year" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">179</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="month" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">879</rx:days_to_drug_therapy_end>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="958767">Targeted Molecular therapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="958768"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="958769">herceptin</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="958765">ADJUVANT</clin_shared:regimen_indication>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="958766"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="958775">IV</rx:route_of_administration>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="958779">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
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+                <rad:bcr_radiation_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">C407753A-0959-403F-A289-925E56F5B012</rad:bcr_radiation_uuid>
+                <rad:days_to_radiation_therapy_start precision="month" xsd_ver="1.12" tier="2" cde="3008313" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_started_days_to" display_order="33" cde_ver="1.000">331</rad:days_to_radiation_therapy_start>
+                <rad:days_to_radiation_therapy_end precision="month" xsd_ver="1.12" tier="2" cde="3008333" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_ended_days_to" display_order="17" cde_ver="1.000">361</rad:days_to_radiation_therapy_end>
+                <rad:radiation_type preferred_name="radiation_therapy_type" display_order="4" cde="2842944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950969"/>
+                <rad:radiation_type_notes preferred_name="radiation_type_other" display_order="999" cde="2195477" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="950970"/>
+                <rad:radiation_dosage preferred_name="radiation_total_dose" display_order="6" cde="2721441" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950972"/>
+                <rad:units preferred_name="radiation_adjuvant_units" display_order="7" cde="61446" cde_ver="3.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950973"/>
+                <rad:numfractions preferred_name="radiation_adjuvant_fractions_total" display_order="8" cde="61465" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950974"/>
+                <rad:anatomic_treatment_site preferred_name="radiation_therapy_site" display_order="5" cde="2793522" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950971"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950967">ADJUVANT</clin_shared:regimen_indication>
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+                <rad:radiation_treatment_ongoing preferred_name="radiation_therapy_ongoing_indicator" display_order="13" cde="2842745" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950978">NO</rad:radiation_treatment_ongoing>
+                <rad:course_number preferred_name="course_number" display_order="999" cde="2732184" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="950966"/>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="950964">23</clin_shared:day_of_form_completion>
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+            </rad:radiation>
+        </rad:radiations>
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+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	74363160	74431498	10	-0.641
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	74431616	76627386	1531	-0.0093
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	76632788	76635593	3	-1.2793
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	76638983	78337711	1669	-0.0047
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	78338543	78350868	17	0.8068
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	78351104	84795861	7076	-0.0049
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	84799614	84800743	6	-1.1959
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	84802423	86256879	1151	0.0011
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	86256906	86257234	8	-0.8307
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	16	86257323	90096867	2382	-0.0002
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	150733	6054891	3246	-0.0013
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	6055381	6059063	6	-1.3287
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	6060639	6835838	640	-0.0114
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	6836195	6836310	2	-1.8899
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	6837010	7354136	189	0.021
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	7354708	7362487	3	-1.0393
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	7363157	16175919	6130	0.0032
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	16176709	16177220	2	-2.6489
+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	16180370	36109315	8038	0.0003
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+1640e99c-8aa6-43ac-9c21-7a23d2c59355	17	36460442	77177434	23760	0.0019
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+1640e99c-8aa6-43ac-9c21-7a23d2c59355	19	15722914	54215136	19875	0.0012
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+1640e99c-8aa6-43ac-9c21-7a23d2c59355	19	54249482	58586487	2587	-0.0063
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+1640e99c-8aa6-43ac-9c21-7a23d2c59355	20	965819	965855	2	-1.5343
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+1640e99c-8aa6-43ac-9c21-7a23d2c59355	20	4465402	4468301	5	-1.0056
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data/gdc_data_organized/0dd8dbc1-c48b-4e7c-b401-57101f724967/TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_A10_1513252.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,108 @@
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+0a50d096-f517-485c-9b61-5ab097ce7d8d	7	72889156	158592540	44284	0.0006
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data/gdc_data_organized/0dd8dbc1-c48b-4e7c-b401-57101f724967/TCGA-BRCA.0a50d096-f517-485c-9b61-5ab097ce7d8d.ascat3.allelic_specific.seg.txt

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+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
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data/gdc_data_organized/0dd8dbc1-c48b-4e7c-b401-57101f724967/TCGA-S3-AA11-01A-03-TS3.8C92F642-024A-482C-A5D0-A49910FE31C6.svs

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data/gdc_data_organized/0dd8dbc1-c48b-4e7c-b401-57101f724967/TCGA-S3-AA11-01A-31D-A89F-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt

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+GDC_Aliquot_ID	Chromosome	Start	End	Num_Probes	Segment_Mean
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+TCGA-S3-AA11-01A-31D-A89F-36	chr19	15723001	27346000	8770	-0.004368
+TCGA-S3-AA11-01A-31D-A89F-36	chr19	27346001	27401000	55	0.036247
+TCGA-S3-AA11-01A-31D-A89F-36	chr19	27401001	54220000	26436	-0.005974
+TCGA-S3-AA11-01A-31D-A89F-36	chr19	54221001	54241000	20	-1.113459
+TCGA-S3-AA11-01A-31D-A89F-36	chr19	54244001	58475000	4172	-0.005642
+TCGA-S3-AA11-01A-31D-A89F-36	chr19	58475001	58591000	111	-0.559378
+TCGA-S3-AA11-01A-31D-A89F-36	chr20	60001	29126000	26395	-0.000996
+TCGA-S3-AA11-01A-31D-A89F-36	chr20	29187001	29587000	374	-0.622608
+TCGA-S3-AA11-01A-31D-A89F-36	chr20	29587001	29894000	305	0.025630
+TCGA-S3-AA11-01A-31D-A89F-36	chr20	29894001	30270000	149	-0.631596
+TCGA-S3-AA11-01A-31D-A89F-36	chr20	30273001	64334000	33621	-0.001286
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	5103001	8023000	195	-0.081750
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	8036001	8043000	6	-2.631775
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	8044001	9019000	109	-0.051165
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	9019001	10057000	355	-0.080231
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	10064001	10126000	32	-0.600047
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	10140001	10515000	177	-0.291720
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	10515001	10601000	86	0.041765
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	10601001	10709000	108	0.058934
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	10709001	13477000	520	0.058718
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	13477001	13487000	10	-1.130753
+TCGA-S3-AA11-01A-31D-A89F-36	chr21	13488001	46682000	32153	-0.001224
+TCGA-S3-AA11-01A-31D-A89F-36	chr22	10661001	11954000	387	0.025634
+TCGA-S3-AA11-01A-31D-A89F-36	chr22	11973001	12179000	34	-0.679140
+TCGA-S3-AA11-01A-31D-A89F-36	chr22	12185001	16042000	349	-0.018856
+TCGA-S3-AA11-01A-31D-A89F-36	chr22	16042001	16047000	5	2.486451
+TCGA-S3-AA11-01A-31D-A89F-36	chr22	16047001	50796000	33082	-0.019568
+TCGA-S3-AA11-01A-31D-A89F-36	chrX	251001	3278000	2230	0.004132
+TCGA-S3-AA11-01A-31D-A89F-36	chrX	3487001	141006000	62	0.604429
+TCGA-S3-AA11-01A-31D-A89F-36	chrX	141050001	156026000	316	0.012030
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	6534001	10658000	12	-0.524086
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	10660001	10693000	14	-4.123117
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	10755001	10861000	10	-1.321844
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	10863001	10864000	1	-0.629837
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	10866001	10922000	5	-2.317634
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	10926001	11015000	9	-0.633376
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11025001	11278000	20	-1.555943
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11289001	11319000	20	-0.176451
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11319001	11321000	2	-2.448150
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11324001	11329000	5	-0.584977
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11329001	11410000	27	-1.219293
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11414001	11556000	5	-8.067681
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	11643001	15897000	11	-0.472045
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	26403001	26442000	5	-1.641391
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	26638001	56708000	6	-3.842176
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	56821001	56838000	17	-0.345555
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	56838001	56845000	7	-1.296211
+TCGA-S3-AA11-01A-31D-A89F-36	chrY	56845001	56887000	42	-0.424666
+TCGA-S3-AA11-01A-31D-A89F-36	chrM	1	16569	17	1.173207

data/gdc_data_organized/1111fb30-46ce-4722-98da-ec9ba2323d90/TCGA-AO-A03O-01A-31-A13A-20_RPPA_data.tsv

@@ -0,0 +1,488 @@
+AGID	lab_id	catalog_number	set_id	peptide_target	protein_expression
+AGID00100	882	sc-628	Old	1433BETA	0.096323
+AGID00111	913	sc-23957	Old	1433EPSILON	-0.056632
+AGID00101	883	sc-1019	Old	1433ZETA	0.45823
+AGID00001	2	9452	Old	4EBP1	-0.173835
+AGID00002	3	9456	Old	4EBP1_pS65	-0.064008
+AGID00003	6	9459	Old	4EBP1_pT37T46	-1.1327
+AGID00443	8	9455	Old	4EBP1_pT70	-0.0648095
+AGID00120	985	4937	Old	53BP1	0.53468
+AGID00004	13	3661	Old	ACC_pS79	-0.438825
+AGID00005	14	1768-1/ab45174	Old	ACC1	0.98823
+AGID00408	2372	3658	Set163	AceCS1	0.2459402
+AGID00473	1182	5335	Old	ACETYLATUBULINLYS40	-0.2036555
+AGID00404	2367	9189	Set163	ACSL1	0.7910407
+AGID02144	2450	PA5-27081	Old	ACVRL1	0.0150532
+AGID00186	1198	ab88574	Old	ADAR1	0.92482
+AGID00146	1084	4691	Old	AKT	0.0377919
+AGID00028	230	9271	Old	AKT_pS473	-1.3321
+AGID00170	1154	2965	Old	AKT_pT308	-0.994545
+AGID00316	1800	3063	Set163	Akt2	0.9546257
+AGID00347	2009	8599	Set163	Akt2_pS474	-0.5366698
+AGID02215	2577	ab195377	Set163	ALKBH5	0.7163355
+AGID00498	924	CA1030	Old	ALPHACATENIN	NA
+AGID00287	1630	ABC80	Set163	Ambra1_pS52	0.0422449
+AGID00236	1351	ab129081	Set163	AMPK-a2_pS345	0.1142956
+AGID00006	39	2532	Old	AMPKALPHA	-0.96473
+AGID00007	40	2535	Old	AMPKALPHA_pT172	-0.477195
+AGID00193	1208	610066	Old	ANNEXIN1	-0.95809
+AGID00166	1142	610668	Old	ANNEXINVII	0.158975
+AGID00371	756	1852-1/ab52615	Old	AR	2.22805
+AGID00194	1217	4432	Old	ARAF	0.28182
+AGID02191	2507	PA5-39728	Old	ARAF_pS299	0.225755
+AGID00260	1053	sc-32761	Old	ARID1A	0.476445
+AGID00264	1560	HPA029318	Old	ASNS	-0.0671805
+AGID00276	1612	3415	Set163	Atg3	-0.02801932
+AGID00309	1775	13507	Set163	Atg4B	-0.2443098
+AGID00310	1776	12994	Set163	Atg5	0.4663807
+AGID00277	1613	8558	Set163	Atg7	-0.03401926
+AGID00242	1363	2873	Old	ATM	-0.27874
+AGID02142	2447	13050	Set163	ATM_pS1981	-0.1891744
+AGID00217	1289	ab14748	Set163	ATP5A	0.1991001
+AGID02145	2451	PA5-43776	Set163	ATP5H	-0.3366843
+AGID02150	2456	13934	Set163	ATR	-0.06522229
+AGID00315	1795	ab178407	Set163	ATR_pS428	0.2631445
+AGID00268	1569	ab97508	Set163	ATRX	0.4515181
+AGID00391	2332	14475	Set163	Aurora-A	1.873601
+AGID00392	2333	2914	Set163	Aurora-ABC_pT288_pT232_pT198	-0.2566392
+AGID02195	2512	MA5-27890	Set163	Aurora-B	0.2365744
+AGID00215	1271	8661	Old	AXL	0.23201
+AGID02143	2449	8457	Set163	b-Actin	-0.2108595
+AGID00179	1170	9565	Set163	b-Catenin_pT41_S45	-0.2504343
+AGID00301	1725	14058	Set163	B7-H3	-1.44847
+AGID00302	1726	14572	Set163	B7-H4	-0.2661646
+AGID00008	63	9291	Old	BAD_pS112	-0.448455
+AGID00009	71	1542-1/ab32371	Old	BAK	-0.122805
+AGID00192	1207	sc-28383	Old	BAP1C4	0.184345
+AGID00010	73	2772	Old	BAX	-0.5079
+AGID00433	80	M0887	Old	BCL2	-0.011505
+AGID00219	1299	PAB8528	Old	BCL2A1	0.0489735
+AGID00012	84	1018-1	Old	BCLXL	-0.254825
+AGID00377	87	sc-10086	Old	BECLIN	0.0736415
+AGID00011	75	9562	Old	BETACATENIN	-0.34714
+AGID00013	88	1008-1/ab32060	Old	BID	-0.16617
+AGID00180	90	1036-1/ab32158	Old	BIM	1.16765
+AGID00221	1311	610978	Set163	BiP-GRP78	0.1494452
+AGID00373	2194	07-507	Set163	BMK1-Erk5_pT218_Y220	-0.007659224
+AGID00355	92	1647/ab33899	Old	BRAF	0.375555
+AGID00014	94	2696	Old	BRAF_pS445	-0.194735
+AGID00445	761	9012	Old	BRCA2	0.090511
+AGID00266	1567	13440	Old	BRD4	0.358425
+AGID00168	1146	2865	Set163	c-Abl_pY412	-0.12426
+AGID00278	1615	3130	Set163	c-IAP2	-0.08640437
+AGID00345	1990	5649	Old	CA9	NA
+AGID00265	1565	2862	Old	CABL	-0.062365
+AGID00429	2407	2679	Set163	Calnexin	0.2611205
+AGID00176	1165	9496	Set163	Caspase-8-cleaved	-0.05145434
+AGID00623	111	9665	Old	CASPASE3	0.117287
+AGID00015	109	9491	Old	CASPASE7CLEAVEDD198	1.29315
+AGID00118	951	9746	Old	CASPASE8	-0.153256
+AGID00537	935	551246	Old	CASPASE9	NA
+AGID00016	114	3238	Old	CAVEOLIN1	-0.47101
+AGID00358	2100	ab76000	Set163	CD134	-0.2413107
+AGID00303	1737	826701	Set163	CD171	0.02648072
+AGID00410	125	1632-1/ab78237	Old	CD20	-0.112176
+AGID00220	1308	ab28340	Old	CD26	0.00424
+AGID00191	1206	610467	Set163	CD29	-0.00512961
+AGID00017	127	M0823	Old	CD31	0.18449
+AGID00369	2174	ab108403	Set163	CD38	0.09579075
+AGID00359	2104	ab133616	Set163	CD4	0.3950195
+AGID00411	1398	3570	Set163	CD44	-0.5337644
+AGID00237	1352	M070101-2	Set163	CD45	0.1013306
+AGID00115	937	611016	Old	CD49B	0.30046
+AGID02171	2482	91882	Set163	CD86	-0.01999927
+AGID00329	1873	4688	Set163	cdc25C	1.058756
+AGID00227	1332	4651	Set163	Cdc42	-0.2121195
+AGID00422	2396	3387	Set163	Cdc6	-0.1505094
+AGID00501	1007	9112	Old	CDK1	-0.0383755
+AGID00293	1658	ab32384	Set163	CDK1_pT14	0.8653007
+AGID00314	1783	4539	Old	CDK1_pY15	-0.129265
+AGID00423	2397	8064	Set163	CDT1	-0.4727647
+AGID02101	2348	15102	Set163	cGAS	0.2020907
+AGID00447	2410	13460	Set163	CHD1L	0.8454889
+AGID00189	1203	2360	Old	CHK1	-0.20373
+AGID00234	1348	ab79758	Old	CHK1_pS296	-0.016684
+AGID00107	903	2348	Old	CHK1_pS345	-0.196355
+AGID00018	146	3440	Old	CHK2	0.64931
+AGID00019	147	2197	Old	CHK2_pT68	0.294175
+AGID00527	2078	4952	Old	CIAP	-0.0570065
+AGID00350	2018	3793	Set163	CIITA	0.004090746
+AGID00434	155	9164	Old	CJUN_pS73	-0.186205
+AGID00020	157	1522-1/ab32363	Old	CKIT	-0.0547605
+AGID00400	852	NB100-91714	Old	CLAUDIN7	2.00775
+AGID00466	726	3127	Old	CMET	-0.045145
+AGID00079	727	3129	Old	CMET_pY1235	0.138032
+AGID00167	161	9402	Old	CMYC	0.16926
+AGID00292	1656	11130-1-AP	Old	COG3	0.50456
+AGID00021	171	sc-20649	Old	COLLAGENVI	-0.0189026
+AGID00141	1069	459230	Old	COMPLEXIISUBUNIT30	NA
+AGID00267	1568	3512	Set163	Connexin-43	-0.8743095
+AGID00269	1571	6434	Set163	Coup-TFII	-0.3309293
+AGID00150	1116	4850	Set163	Cox-IV	0.2912901
+AGID00195	1218	4842	Set163	Cox2	-0.2089793
+AGID00188	803	05-739	Old	CRAF	0.052104
+AGID00022	179	9427	Old	CRAF_pS338	-0.231595
+AGID00023	181	9197	Set163	Creb	-0.4506204
+AGID00393	2334	9198	Set163	CREB_pS133	-1.228217
+AGID00365	2155	4980	Set163	CSK	0.06227071
+AGID00367	2160	9201	Set163	CtIP	-0.3726346
+AGID00536	2096	ab107198	Old	CTLA4	NA
+AGID00025	198	2936	Set163	Cyclin-D3	0.4527506
+AGID00024	192	1495-1/ab32053	Old	CYCLINB1	0.58191
+AGID00382	194	sc-718	Old	CYCLIND1	0.0021295
+AGID00437	199	sc-25303	Old	CYCLINE1	-0.0769445
+AGID00449	202	1142-1	Old	CYCLINE2	0.1470495
+AGID00209	1257	ab110324	Set163	Cyclophilin-F	0.3968105
+AGID00247	1379	ab48389	Set163	D-a-Tubulin	0.1393657
+AGID00308	1770	GTX10524	Set163	DAPK1_pS308	-0.09330931
+AGID00304	1744	ab51601	Set163	DAPK2	-0.09937448
+AGID00343	1980	6998	Set163	DDB-1	0.1703907
+AGID00427	2402	5583	Set163	DDR1	-0.191285
+AGID00428	2403	SAB4504671	Set163	DDR1_pY513	0.2164907
+AGID00532	1273	Bast Lab	Old	DIRAS3	0.076877
+AGID00104	891	ab76008	Old	DJ1	-0.18713
+AGID02146	2452	4658	Set163	DM-Histone-H3	-0.3368646
+AGID00386	1397	ab32521	Set163	DM-K9-Histone-H3	0.001575712
+AGID00352	2030	14649	Set163	DNA-Ligase-IV	-0.08397451
+AGID00407	2371	13609	Set163	DNA_POLG	0.4799707
+AGID00399	2344	5032	Set163	DNMT1	0.8653306
+AGID00409	2373	5391	Set163	DRP1	-0.05972083
+AGID00253	1406	5149	Old	DUSP4	0.73872
+AGID00334	1936	ab76310	Set163	DUSP6	0.1034904
+AGID00116	940	3218	Old	DVL3	-0.132908
+AGID00211	1261	sc-251	Old	E2F1	NA
+AGID00148	1099	3195	Old	ECADHERIN	0.0892365
+AGID00135	1060	2332	Old	EEF2	-0.24878
+AGID00136	1061	3692	Old	EEF2K	0.5849
+AGID00152	1120	2232	Old	EGFR	-0.535755
+AGID00450	217	2234	Old	EGFR_pY1068	-0.189485
+AGID00026	221	1124-1/ab32578	Old	EGFR_pY1173	-0.0860617
+AGID00078	722	9742	Old	EIF4E	0.003353
+AGID00328	1871	ab76256	Set163	eIF4E_pS209	-0.1457696
+AGID00154	1124	2498	Old	EIF4G	0.556195
+AGID00027	228	9181	Set163	Elk1_pS383	-0.4884343
+AGID00235	1350	M061329-2	Set163	EMA	-0.1536997
+AGID00394	2337	3810	Set163	Enolase-1	-0.01408449
+AGID00395	2338	8171	Set163	Enolase-2	-0.5680742
+AGID00196	1219	GTX629542	Old	ENY2	0.189265
+AGID00438	1849	A302-024A	Set163	EphA2	-0.2528993
+AGID00552	2422	6347	Set163	EphA2_pS897	-0.3027693
+AGID00553	2423	12677	Set163	EphA2_pY588	-0.2519778
+AGID00075	693	556347	Old	EPPK1	2.0246
+AGID00335	238	RM-9101	Old	ERALPHA	3.1077
+AGID00029	241	1091-1/ab32396	Old	ERALPHA_pS118	-0.0942235
+AGID00240	247	MS-671	Old	ERCC1	-0.0212345
+AGID00239	1355	11331-1-AP	Old	ERCC5	-0.22144
+AGID00484	249	sc-154	Old	ERK2	-0.122065
+AGID00372	2193	3552	Set163	Erk5	0.3386008
+AGID00405	2369	13826	Set163	ERRalpha	-0.007284379
+AGID00187	1200	A303-501A	Old	ETS1	-0.729975
+AGID00511	2492	2593	Set163	EVI1	-0.2209449
+AGID00485	1284	4905	Old	EZH2	NA
+AGID00030	252	1700-1/ab40794	Set163	FAK	-0.07169926
+AGID02151	2457	8556	Set163	FAK_pY397	-0.2404459
+AGID00171	1156	3180	Old	FASN	2.54975
+AGID00356	2085	500-P18/10775-082	Set163	FGF-basic	-0.4848743
+AGID00031	262	1574-1/ab45688	Old	FIBRONECTIN	0.158407
+AGID00339	1959	4403	Set163	FN14	-0.1058943
+AGID02152	2458	20459	Old	FOXM1	0.645505
+AGID00378	269	9467	Old	FOXO3A	0.233986
+AGID02197	2515	orb6051	Old	FOXO3A_pS318S321	-0.24496
+AGID02167	2475	PA5-64616	Set163	FRS2-alpha_pY196	-0.02552925
+AGID02213	2575	ab124892	Set163	FTO	-0.1572593
+AGID02141	2446	12263	Old	G6PD	0.305565
+AGID00117	943	3239	Old	GAB2	0.274155
+AGID00412	274	AM4300	Old	GAPDH	-1.25195
+AGID00086	764	558686	Old	GATA3	2.7217
+AGID00383	1578	4253	Old	GATA6	0.24116
+AGID00289	1634	12601-1-AP	Set163	GCLC	-0.4130343
+AGID00305	1745	ab124827	Set163	GCLM	0.04329074
+AGID00212	1263	3305	Old	GCN5L2	0.402505
+AGID00270	1579	3538	Set163	Gli1	0.1413403
+AGID00263	1520	ab69838	Set163	Gli3	0.5552896
+AGID00548	2530	3660	Set163	Glucocorticoid-Receptor	-0.1327543
+AGID00387	1617	12793	Set163	Glutamate-D1-2	0.1902296
+AGID00262	1491	ab156876	Set163	Glutaminase	-0.01264931
+AGID00319	1807	4275	Set163	Granzyme-B	0.7095456
+AGID00368	2169	ab183737	Set163	GRB7	0.53078
+AGID00396	2339	3593	Set163	Grp75	0.7508357
+AGID00174	1163	9315	Set163	GSK-3B	0.4005499
+AGID00502	1082	9336	Old	GSK3_pS9	-1.2187
+AGID00033	284	sc-7291	Old	GSK3ALPHABETA	0.1589575
+AGID00034	285	9331	Old	GSK3ALPHABETA_pS21S9	-1.35695
+AGID00129	1035	3886	Old	GYS	NA
+AGID00130	1036	3891	Old	GYS_pS641	NA
+AGID01354	1342	9718	Set163	H2AX_pS139	0.02003071
+AGID00363	1409	MA1-2022	Set163	H2AX_pS140	0.0004156838
+AGID00131	1038	MS-325-P1	Old	HER2	0.38816
+AGID00142	299	06-229	Old	HER2_pY1248	0.169695
+AGID00110	911	sc-285	Old	HER3	0.814845
+AGID00080	728	4791	Old	HER3_pY1289	-0.097237
+AGID00103	890	2573	Old	HEREGULIN	0.006222
+AGID00271	1582	11988	Set163	HES1	-0.3274995
+AGID00397	2340	2024	Set163	Hexokinase-I	0.2159305
+AGID00442	1023	2867	Set163	Hexokinase-II	1.079089
+AGID00419	1402	610958	Old	HIF1ALPHA	NA
+AGID00205	1250	ab1791	Set163	Histone-H3	-0.6194794
+AGID00398	2341	3377	Set163	Histone-H3_pS10	-0.3568644
+AGID00332	1901	ab128959	Set163	HLA-DQA1	0.1604194
+AGID00333	1902	14832-1-AP	Set163	HMHA1	0.1956403
+AGID00035	321	2402	Set163	HSP27	-0.1785643
+AGID00036	323	2401	Set163	HSP27_pS82	-1.145949
+AGID00320	1808	12165	Set163	HSP60	0.7078755
+AGID00037	325	4872	Old	HSP70	-0.35183
+AGID00366	2158	86630	Set163	IDO	0.7593153
+AGID00197	1221	3024	Old	IGF1R_pY1135Y1136	0.0684395
+AGID00038	335	3922	Old	IGFBP2	1.98295
+AGID00090	793	611504	Set163	IGFBP3	-0.1711496
+AGID00039	336	3027	Set163	IGFRb	0.2285608
+AGID00336	1949	12153	Set163	IL-6	-0.3745446
+AGID02221	2583	57145	Set163	IMP3	0.2083106
+AGID02153	2459	14543	Old	INPP4B	0.814825
+AGID00272	1586	3025	Set163	IR-b	0.4189507
+AGID00519	2519	4302	Set163	IRF-3	0.503366
+AGID00520	2520	4947	Set163	IRF-3_pS396	0.2286002
+AGID00223	1316	sc-497	Old	IRF1	-0.0550165
+AGID00092	802	06-248	Old	IRS1	-0.041215
+AGID00040	371	4502	Set163	IRS2	-0.4775297
+AGID00250	1394	sc-13157	Old	JAB1	0.140855
+AGID00256	1413	ab109536	Set163	Jagged1	-0.2282737
+AGID00177	1166	3230	Old	JAK2	0.001603
+AGID00758	377	4671	Old	JNK_pT183Y185	-0.24024
+AGID02136	2439	PA5-28262	Old	JNK2	0.315405
+AGID00307	1757	ab10484	Set163	KAP1	0.3321252
+AGID00528	904	2180	Old	KU80	-0.0191665
+AGID00375	2237	HPA028732	Set163	LAD1	-0.3886042
+AGID00290	1643	IHC-00439	Set163	Lasu1	0.4396857
+AGID00279	1618	4108	Set163	LC3A-B	-0.2698245
+AGID00042	397	2752	Old	LCK	-0.17343
+AGID00119	976	3582	Old	LDHA	NA
+AGID00533	977	ab85319	Old	LDHB	NA
+AGID00529	1477	3050	Old	LKB1	-0.01529415
+AGID00244	1367	2568	Set163	LRP6_pS1490	0.1355057
+AGID00439	2424	2796	Set163	Lyn	-0.1941643
+AGID02154	2460	4370	Old	MAPK_pT202Y204	-0.74297
+AGID00198	1222	5453	Set163	Mcl-1	0.7255097
+AGID00288	1633	AB3314P	Set163	MCT4	0.1441206
+AGID00175	1164	3521	Set163	MDM2_pS166	-0.1463542
+AGID00044	417	1235-1/ab32576	Old	MEK1	0.24371
+AGID00143	1076	9154	Old	MEK1_pS217S221	-0.360035
+AGID00201	1243	9125	Set163	MEK2	0.1722503
+AGID00361	2118	ab51061	Set163	MelanA	0.2879757
+AGID00362	2119	ab137078	Set163	Melanoma-gp100	-0.08760935
+AGID00337	1951	12711	Set163	MERIT40	0.1262351
+AGID00338	1952	12110	Set163	MERIT40_pS29	-0.01637925
+AGID02212	2574	ab195352	Set163	METTL3	0.5125907
+AGID00225	1323	sc-20121	Set163	MIF	0.6813608
+AGID00137	1062	WH0054206M1	Old	MIG6	0.085505
+AGID00403	2117	ab20663	Set163	MITF	-0.2216046
+AGID00503	1067	ab3298	Old	MITOCHONDRIA	NA
+AGID00321	1809	14739	Set163	Mitofusin-1	0.363252
+AGID00322	1810	11925	Set163	Mitofusin-2	0.4161006
+AGID00389	2324	3515	Set163	MLH1	0.2375406
+AGID00312	1780	14993	Set163	MLKL	0.0420306
+AGID00402	2359	MAB3328	Set163	MMP14	-0.7048793
+AGID00045	435	4022	Set163	MMP2	-0.4232821
+AGID00122	1005	2195	Set163	Mnk1	0.3272195
+AGID00331	1899	sc-377312	Set163	MR1	-0.1668544
+AGID00273	1589	ab103319	Set163	MRAP	0.1610708
+AGID00530	440	4847	Old	MRE11	0.092353
+AGID00390	905	2850	Old	MSH2	-0.033047
+AGID00138	1063	22030002	Old	MSH6	0.26264
+AGID00299	1675	ab76148	Set163	MSI2	0.7716958
+AGID00232	1344	ab14705	Set163	MTCO1	0.8154791
+AGID00046	444	2983	Old	MTOR	0.37714
+AGID00047	446	2971	Old	MTOR_pS2448	-0.093191
+AGID00204	1247	H00009788-M01A	Set163	MTSS1	0.04697557
+AGID00401	1139	21370002	Old	MYH11	-1.59765
+AGID00291	1647	3403	Old	MYOSINIIA	0.17117
+AGID00173	1160	5026	Old	MYOSINIIA_pS1943	0.298305
+AGID00318	1803	4282	Set163	Myt1	0.3576305
+AGID00216	1274	5795-1/ab129189	Old	NAPSINA	NA
+AGID00418	452	4061	Old	NCADHERIN	-0.439855
+AGID00156	1126	3217	Old	NDRG1_pT346	-0.590075
+AGID02133	2436	PA5-45913	Set163	NDUFB4	-0.08588925
+AGID00134	1046	22710002	Old	NF2	0.03764
+AGID00048	457	3033	Old	NFKBP65_pS536	0.2371
+AGID02155	2461	3608	Old	NOTCH1	-0.164893
+AGID00340	1969	4147	Set163	Notch1-cleaved	-0.1163045
+AGID00087	767	sc-5593	Set163	Notch3	0.01431073
+AGID00258	1420	3187	Set163	NQO1	-0.6608144
+AGID00162	1136	sc-31	Old	NRAS	0.123202
+AGID00257	1419	12721	Old	NRF2	NA
+AGID00297	1669	2750	Set163	Oct-4	-0.3070443
+AGID00420	466	1712-1/ab40803	Old	P16INK4A	0.244535
+AGID00384	470	sc-6246	Old	P21	0.08952105
+AGID00105	897	1591-1/ab32034	Old	P27	0.151262
+AGID00096	842	AF1555	Old	P27_pT157	0.104398
+AGID00099	878	ab64949	Old	P27_pT198	0.194445
+AGID00181	1175	9228	Set163	p38-a	-0.2320304
+AGID00098	479	9211	Old	P38_pT180Y182	-1.00124
+AGID00049	478	9212	Old	P38MAPK	0.0714975
+AGID00151	1119	4695	Set163	p44-42-MAPK	-0.1653643
+AGID00050	481	9282	Old	P53	0.1171015
+AGID00490	1187	610833	Old	P62LCKLIGAND	0.337485
+AGID00545	1415	ab53039	Old	P63	NA
+AGID00052	494	9205	Old	P70S6K_pT389	-0.265545
+AGID00051	493	1494-1/ab32529	Old	P70S6K1	0.26713
+AGID00085	759	9347	Old	P90RSK	-0.1204115
+AGID00531	770	9344	Old	P90RSK_pT359S363	-0.360115
+AGID00182	1178	9346	Set163	p90RSK_pT573	-0.06184937
+AGID00053	499	612024	Old	PAI1	-0.50652
+AGID00224	1322	HPA035895	Set163	PAICS	0.7506608
+AGID00323	1811	2602	Set163	PAK1	-0.1868897
+AGID02199	2517	PA5-69540	Set163	PAK4	-0.006604363
+AGID00245	1370	4336-BPC-100	Set163	PAR	1.5223
+AGID00374	2209	66564	Set163	PARG	0.3667005
+AGID00370	1372	sc-7150	Old	PARP1	0.58051
+AGID00468	501	9546	Old	PARPCLEAVED	0.157576
+AGID00274	1591	ab53715	Set163	Patched	0.06924072
+AGID00513	2486	60433	Set163	PAX6	-0.1700394
+AGID00441	1621	9857	Set163	PAX8	-0.05002563
+AGID00054	504	2542	Old	PAXILLIN	-0.014916
+AGID00055	509	2130	Old	PCADHERIN	-0.065521
+AGID00248	511	ab29	Old	PCNA	-0.116905
+AGID00413	2095	43248	Old	PDCD1	NA
+AGID00094	816	600-401-965	Old	PDCD4	0.00397
+AGID00385	1225	3169	Set163	PDGFRB	-0.6107343
+AGID00210	1258	ab110332	Set163	PDH	0.04669459
+AGID00324	1817	3205	Set163	PDHA1	-0.008844925
+AGID00280	1622	3820	Set163	PDHK1	0.001380743
+AGID00056	515	3062	Old	PDK1	0.397485
+AGID00057	516	3061	Old	PDK1_pS241	0.52363
+AGID00300	1234	sc-19090	Old	PDL1	0.3014
+AGID00124	1017	2780	Old	PEA15	-0.524035
+AGID00125	1018	44-836G	Old	PEA15_pS116	-0.454685
+AGID00440	2429	3192	Set163	PERK	0.5169801
+AGID02207	2569	ab192876	Set163	PGM1	-0.0183099
+AGID00281	1623	13428	Set163	PHGDH	0.7338001
+AGID00425	2399	22789-1-AP	Set163	PHLPP	-0.2782092
+AGID00226	1330	sc-376412	Set163	PI3K-p110-b	-0.02998926
+AGID00093	808	4255	Old	PI3KP110ALPHA	0.422345
+AGID00058	523	06-195	Old	PI3KP85	0.1869455
+AGID00296	1667	5675	Set163	PKA-a	0.02133561
+AGID00259	1426	9375	Set163	PKC-a-b-II_pT638_T641	-0.02727925
+AGID00172	529	05-154	Old	PKCALPHA	-0.71119
+AGID00460	530	06-822	Old	PKCALPHA_pS657	-0.62304
+AGID00114	932	07-875	Old	PKCDELTA_pS664	-0.23483
+AGID00163	1137	9371	Old	PKCPANBETAII_pS660	-0.69891
+AGID00126	1025	4053	Old	PKM2	NA
+AGID00512	2489	5690	Set163	PLC-gamma1	1.75344
+AGID02138	2441	GTX133463	Set163	PLC-gamma2_pY759	-0.1233744
+AGID00084	754	4513	Set163	PLK1	0.9560407
+AGID00203	1246	22510002	Set163	PMS2	0.4220107
+AGID00207	1254	ab14734	Set163	Porin	0.04642075
+AGID00381	549	1483-1/ab32085	Old	PR	0.229965
+AGID00081	738	AHO1031	Set163	PRAS40	-0.01348925
+AGID00082	739	44-1100G	Old	PRAS40_pT246	-0.322185
+AGID00424	2398	OAAF05458	Set163	PRC1_pT481	-0.2777193
+AGID00492	1205	HPA007730	Old	PRDX1	0.26011
+AGID00190	1204	ab102739	Old	PREX1	3.01595
+AGID00061	566	9552	Old	PTEN	0.140295
+AGID00364	2154	ab76942	Set163	PTPN12	-0.2538994
+AGID00218	1290	4976	Set163	Puma	-0.1593442
+AGID00200	1242	SAB2900066	Old	PYGB	NA
+AGID00535	1494	ab61013	Old	PYGL	NA
+AGID00202	1245	H00005837-M10	Old	PYGM	NA
+AGID00275	1607	3291	Set163	Pyk2_pY402	-0.07055483
+AGID00145	1083	3539	Old	RAB11	-0.212745
+AGID00169	1150	4314	Old	RAB25	0.551035
+AGID00342	1979	24555	Set163	Rad23A	-0.4493843
+AGID00261	987	05-525	Old	RAD50	-0.62123
+AGID00360	579	NA71	Old	RAD51	-0.205285
+AGID00158	1128	2280	Old	RAPTOR	0.52674
+AGID00059	552	9309	Old	RB	-0.145675
+AGID00060	557	9308	Old	RB_pS807S811	-1.03465
+AGID00164	1138	21390002	Old	RBM15	0.62279
+AGID00547	735	3221	Old	RET_pY905	NA
+AGID00097	847	MAB3426	Set163	Rheb	-0.1314793
+AGID00159	1129	2114	Old	RICTOR	-0.056944
+AGID00160	1130	3806	Old	RICTOR_pT1135	-0.1323
+AGID00282	1624	4926	Set163	RIP	0.1476557
+AGID00283	1625	13526	Set163	RIP3	0
+AGID00416	1368	2208	Set163	RPA32	-0.2111343
+AGID00246	1375	A300-245A	Set163	RPA32_pS4_S8	0.05373965
+AGID00341	1978	3388	Set163	RRM1	0.1526355
+AGID00344	1981	PA5-27856	Set163	RRM2	0.2352141
+AGID00554	2425	8408	Set163	RSK1	0.2091429
+AGID00353	2031	13018	Set163	S100A4	-0.3286343
+AGID00330	1874	2317	Old	S6	0.30611
+AGID00062	600	2211	Old	S6_pS235S236	-0.669025
+AGID00063	601	2215	Old	S6_pS240S244	-0.132726
+AGID00157	1127	sc-58420	Old	SCD1	1.575445
+AGID00230	1339	11998	Set163	SDHA	-0.1393993
+AGID00294	1039	ab69836	Old	SETD2	-0.0275855
+AGID00161	1131	32-4500	Old	SF2	0.18711
+AGID02179	2495	3534	Set163	SFRP1	0.03252472
+AGID00431	2411	12103	Set163	SGK1	-0.20442
+AGID00430	2409	8156	Set163	SGK3	0.8582657
+AGID02168	2476	bs-3413R	Old	SHC_pY317	0.05811705
+AGID00376	2241	3397	Set163	SHP2	-0.3106295
+AGID00183	1180	3751	Old	SHP2_pY542	-0.093409
+AGID02208	2570	ab8120	Set163	SIRP-alpha	0.0007650844
+AGID00222	1133	sc-99002	Old	SLC1A5	1.30835
+AGID00255	1411	sc-136891	Set163	Slfn11	-0.1275793
+AGID00064	610	2954	Old	SMAC	-0.329675
+AGID00113	922	1649-1/ab33902	Old	SMAD1	-0.142746
+AGID00091	796	1735-1/ab40854	Old	SMAD3	-0.043495
+AGID02160	2467	46535	Old	SMAD4	-0.152218
+AGID00065	616	3895	Old	SNAIL	0.178515
+AGID00325	1818	4266	Set163	SOD1	-0.1525007
+AGID00380	1328	13141	Set163	SOD2	-0.3479945
+AGID00298	1670	2748	Set163	Sox2	0.9919205
+AGID00066	621	05-184	Old	SRC	0.1668305
+AGID02157	2463	6943	Old	SRC_pY416	-0.05345425
+AGID00068	626	2105	Old	SRC_pY527	-0.634365
+AGID00185	1197	4904	Set163	Stat3	0.4217476
+AGID00388	637	9131	Old	STAT3_pY705	-0.341425
+AGID00069	638	1289-1/ab32043	Old	STAT5ALPHA	1.03191
+AGID00077	718	1972-1/ab52630	Old	STATHMIN	-0.041751
+AGID00357	2099	13647	Set163	STING	0.2042958
+AGID00128	1033	sc-1240	Old	SYK	-0.286495
+AGID00070	646	05-348	Set163	Tau	-0.2029943
+AGID00327	777	2149	Old	TAZ	-0.223765
+AGID00228	1333	7495	Set163	TFAM	0.6305644
+AGID00165	1140	22500002	Old	TFRC	-0.4398
+AGID00149	1107	S1711/ab137573	Old	TIGAR	-0.25343
+AGID00109	908	MS-224-P1	Old	TRANSGLUTAMINASE	-0.500745
+AGID00406	2370	612344	Set163	TRAP1	0.7436007
+AGID00559	2537	PA5-34561	Set163	TRIM24	0.2892835
+AGID00306	1756	ab167154	Set163	TRIM25	0.515685
+AGID00426	2400	PA5-52193	Set163	TRIP13	0.1524358
+AGID00155	1125	4906	Old	TSC1	0.121045
+AGID00144	1081	2044-1/ab76013	Old	TTF1	NA
+AGID00071	670	1613-1/ab32554	Old	TUBERIN	0.45757
+AGID02194	2511	ab109403	Old	TUBERIN_pT1462	-0.28208
+AGID00417	1842	ab173300	Set163	TUFM	0.2067307
+AGID00238	1353	sc-81417	Set163	Twist	-0.02119925
+AGID00436	1080	5585	Set163	Tyro3	-0.05742979
+AGID00295	1662	5546	Set163	U-Histone-H2B	-1.303864
+AGID00214	1270	HPA005651	Set163	UBAC1	-0.3174844
+AGID00351	2020	sc-136145	Set163	UBQLN4	0.007630736
+AGID00213	1267	sc-271268	Set163	UGT1A	0.09301575
+AGID00284	1626	6888	Set163	ULK1_pS757	-0.2388372
+AGID00208	1256	MS304/ab14745	Set163	UQCRC2	0.4612807
+AGID00313	1781	13115	Set163	UVRAG	-0.002249257
+AGID00073	678	3112	Set163	VASP	0.5316904
+AGID00184	1181	2502	Set163	VAV1	0.3154749
+AGID00074	688	2479	Old	VEGFR2	0.83779
+AGID00421	2394	68547	Set163	VHL	0.2096907
+AGID00231	1343	SAB4200080	Set163	Vinculin	-0.6072797
+AGID00317	1802	4936	Set163	Wee1	0.4566845
+AGID00354	2058	4910	Set163	Wee1_pS642	-0.3645595
+AGID00285	1627	12124	Set163	WIPI1	0.4362307
+AGID00286	1628	8567	Set163	WIPI2	0.6518458
+AGID02214	2576	ab195380	Set163	WTAP	0.35347
+AGID00133	1044	sc-32136	Old	XBP1	0.01955495
+AGID00076	699	2042	Set163	XIAP	0.03389022
+AGID00241	1359	sc-56813	Set163	XPA	-0.8805142
+AGID00349	1354	ab3299	Set163	XPF	-0.007581876
+AGID02137	2440	PA5-29359	Old	XRCC1	0.115502
+AGID00088	780	sc-15407	Old	YAP	-0.708015
+AGID00089	782	4911	Old	YAP_pS127	-1.48965
+AGID00504	700	17250002	Old	YB1	-0.007532
+AGID00095	835	2900	Old	YB1_pS102	-0.343995
+AGID02217	2579	ab220163	Set163	YTHDF2	0.5204557
+AGID02210	2572	ab220161	Set163	YTHDF3	0.8208907
+AGID00326	1828	2705	Set163	ZAP-70	0.6547436
+AGID00432	2244	sc-25388	Set163	ZEB1	-0.222181

data/gdc_data_organized/1111fb30-46ce-4722-98da-ec9ba2323d90/c9b9ed6a-ff3e-4f10-bd30-2b746dc43404.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	14853	6027.521339	N
+hsa-let-7a-2	14814	6011.694682	N
+hsa-let-7a-3	15606	6333.097557	N
+hsa-let-7b	15572	6319.299959	N
+hsa-let-7c	1277	518.221555	N
+hsa-let-7d	441	178.962964	N
+hsa-let-7e	1323	536.888893	N
+hsa-let-7f-1	787	319.373816	N
+hsa-let-7f-2	754	305.982030	N
+hsa-let-7g	578	234.559169	N
+hsa-let-7i	659	267.429917	N
+hsa-mir-1-1	2	0.811623	N
+hsa-mir-1-2	1	0.405812	N
+hsa-mir-100	708	287.314691	N
+hsa-mir-101-1	5618	2279.850191	N
+hsa-mir-101-2	5787	2348.432370	N
+hsa-mir-103a-1	29281	11882.572700	Y
+hsa-mir-103a-2	29110	11813.178898	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	10	4.058117	N
+hsa-mir-105-2	7	2.840682	N
+hsa-mir-106a	80	32.464937	Y
+hsa-mir-106b	1359	551.498115	N
+hsa-mir-107	190	77.104225	Y
+hsa-mir-10a	7939	3221.739171	N
+hsa-mir-10b	177472	72020.215916	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	1	0.405812	N
+hsa-mir-1180	72	29.218443	N
+hsa-mir-1181	0	0.000000	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
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+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	0	0.000000	N
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+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	0	0.000000	N
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+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	0	0.000000	N
+hsa-mir-1224	14	5.681364	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	3	1.217435	N
+hsa-mir-1227	0	0.000000	N
+hsa-mir-1228	4	1.623247	N
+hsa-mir-1229	2	0.811623	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
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+hsa-mir-1234	0	0.000000	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	0	0.000000	N
+hsa-mir-1238	0	0.000000	N
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+hsa-mir-1245a	3	1.217435	N
+hsa-mir-1245b	0	0.000000	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	118	47.885782	N
+hsa-mir-1248	13	5.275552	N
+hsa-mir-1249	12	4.869741	N
+hsa-mir-1250	0	0.000000	N
+hsa-mir-1251	0	0.000000	N
+hsa-mir-1252	0	0.000000	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	0	0.000000	N
+hsa-mir-1254-2	3	1.217435	N
+hsa-mir-1255a	0	0.000000	N
+hsa-mir-1255b-1	0	0.000000	N
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+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	0	0.000000	N
+hsa-mir-125a	1454	590.050227	N
+hsa-mir-125b-1	213	86.437894	N
+hsa-mir-125b-2	192	77.915848	N
+hsa-mir-126	6307	2559.454459	N
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+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	1	0.405812	N
+hsa-mir-1263	0	0.000000	N
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+hsa-mir-1265	0	0.000000	N
+hsa-mir-1266	20	8.116234	N
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+hsa-mir-1268a	0	0.000000	N
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+hsa-mir-1269a	21	8.522046	N
+hsa-mir-1269b	16	6.492987	N
+hsa-mir-127	1036	420.420932	N
+hsa-mir-1270	40	16.232468	N
+hsa-mir-1271	1	0.405812	N
+hsa-mir-1272	0	0.000000	N
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+hsa-mir-1275	2	0.811623	N
+hsa-mir-1276	1	0.405812	N
+hsa-mir-1277	3	1.217435	N
+hsa-mir-1278	0	0.000000	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	307	124.584195	N
+hsa-mir-128-2	211	85.626271	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
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+hsa-mir-1284	3	1.217435	N
+hsa-mir-1285-1	0	0.000000	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	1	0.405812	N
+hsa-mir-1287	131	53.161334	N
+hsa-mir-1288	2	0.811623	N
+hsa-mir-1289-1	1	0.405812	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	1	0.405812	N
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+hsa-mir-1290	0	0.000000	N
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+hsa-mir-1296	38	15.420845	N
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+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	123	49.914840	N
+hsa-mir-1302-1	0	0.000000	N
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+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
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+hsa-mir-1305	0	0.000000	N
+hsa-mir-1306	49	19.884774	N
+hsa-mir-1307	9585	3889.705247	N
+hsa-mir-130a	382	155.020073	N
+hsa-mir-130b	114	46.262535	N
+hsa-mir-132	113	45.856723	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	0	0.000000	N
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+hsa-mir-133b	0	0.000000	N
+hsa-mir-134	607	246.327708	N
+hsa-mir-1343	6	2.434870	N
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+hsa-mir-135a-2	3	1.217435	N
+hsa-mir-135b	13	5.275552	N
+hsa-mir-136	50	20.290586	N
+hsa-mir-137	0	0.000000	N
+hsa-mir-138-1	1	0.405812	N
+hsa-mir-138-2	2	0.811623	N
+hsa-mir-139	39	15.826657	N
+hsa-mir-140	713	289.343750	N
+hsa-mir-141	3202	1299.409098	N
+hsa-mir-142	8231	3340.236191	N
+hsa-mir-143	23152	9395.352725	N
+hsa-mir-144	16	6.492987	N
+hsa-mir-145	909	368.882845	N
+hsa-mir-1468	5	2.029059	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	430	174.499036	N
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+hsa-mir-1470	0	0.000000	N
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+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	2	0.811623	N
+hsa-mir-148a	115916	47040.070254	N
+hsa-mir-148b	1511	613.181495	N
+hsa-mir-149	879	356.708494	N
+hsa-mir-150	1126	456.943986	N
+hsa-mir-151a	9543	3872.661155	N
+hsa-mir-151b	5	2.029059	N
+hsa-mir-152	341	138.381793	N
+hsa-mir-153-1	0	0.000000	N
+hsa-mir-153-2	23	9.333669	N
+hsa-mir-1537	1	0.405812	N
+hsa-mir-1538	0	0.000000	N
+hsa-mir-1539	0	0.000000	N
+hsa-mir-154	11	4.463929	N
+hsa-mir-155	1146	465.060220	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	382	155.020073	N
+hsa-mir-15b	1195	484.944994	N
+hsa-mir-16-1	2560	1038.877979	N
+hsa-mir-16-2	2510	1018.587394	N
+hsa-mir-17	1237	501.989086	Y
+hsa-mir-181a-1	825	334.794661	N
+hsa-mir-181a-2	1174	476.422948	N
+hsa-mir-181b-1	224	90.901823	N
+hsa-mir-181b-2	181	73.451920	N
+hsa-mir-181c	78	31.653313	N
+hsa-mir-181d	25	10.145293	N
+hsa-mir-182	55201	22401.212241	N
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+hsa-mir-183	56111	22770.500897	N
+hsa-mir-184	2	0.811623	N
+hsa-mir-185	405	164.353743	N
+hsa-mir-186	939	381.057196	N
+hsa-mir-187	17	6.898799	N
+hsa-mir-188	14	5.681364	N
+hsa-mir-18a	35	14.203410	Y
+hsa-mir-18b	2	0.811623	Y
+hsa-mir-1908	0	0.000000	N
+hsa-mir-1909	0	0.000000	N
+hsa-mir-190a	9	3.652305	N
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+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	1846	749.128418	Y
+hsa-mir-193a	448	181.803646	N
+hsa-mir-193b	722	292.996055	N
+hsa-mir-194-1	137	55.596204	N
+hsa-mir-194-2	151	61.277568	N
+hsa-mir-195	97	39.363736	N
+hsa-mir-196a-1	4786	1942.214847	N
+hsa-mir-196a-2	5894	2391.854223	N
+hsa-mir-196b	474	192.354751	N
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+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	3	1.217435	N
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+hsa-mir-199a-1	3276	1329.439164	Y
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+hsa-mir-199b	8482	3442.094930	Y
+hsa-mir-19a	128	51.943899	N
+hsa-mir-19b-1	198	80.350719	N
+hsa-mir-19b-2	167	67.770556	N
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+hsa-mir-200c	15017	6094.074459	N
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+hsa-mir-20a	311	126.207442	N
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+hsa-mir-22	72446	29399.435191	N
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+hsa-mir-2277	3	1.217435	N
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+hsa-mir-24-1	988	400.941970	N
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+hsa-mir-30d	24122	9788.990085	N
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+hsa-mir-3130-2	3	1.217435	N
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+hsa-mir-3158-2	1	0.405812	N
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+hsa-mir-3173	2	0.811623	N
+hsa-mir-3174	3	1.217435	N
+hsa-mir-3175	1	0.405812	N
+hsa-mir-3176	1	0.405812	N
+hsa-mir-3177	3	1.217435	N
+hsa-mir-3178	2	0.811623	N
+hsa-mir-3179-1	0	0.000000	N
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+hsa-mir-335	232	94.148317	N
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+hsa-mir-33b	226	91.713447	N
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+hsa-mir-3653	21	8.522046	N
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+hsa-mir-3679	1	0.405812	N
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+hsa-mir-374a	563	228.471993	N
+hsa-mir-374b	113	45.856723	Y
+hsa-mir-374c	8	3.246494	Y
+hsa-mir-375	614644	249429.733094	N
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+hsa-mir-376c	4	1.623247	N
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+hsa-mir-378a	248	100.641304	N
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+hsa-mir-382	40	16.232468	N
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+hsa-mir-3913-2	11	4.463929	N
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+hsa-mir-423	601	243.892838	N
+hsa-mir-424	856	347.374824	N
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+hsa-mir-4509-3	0	0.000000	N
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+hsa-mir-450a-2	12	4.869741	N
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+hsa-mir-455	921	373.752586	N
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+hsa-mir-4660	2	0.811623	N
+hsa-mir-4661	5	2.029059	N
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+hsa-mir-4724	97	39.363736	N
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+hsa-mir-4728	3	1.217435	N
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+hsa-mir-4742	6	2.434870	N
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+hsa-mir-4746	11	4.463929	N
+hsa-mir-4747	0	0.000000	N
+hsa-mir-4748	1	0.405812	N
+hsa-mir-4749	2	0.811623	N
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+hsa-mir-4764	2	0.811623	N
+hsa-mir-4765	0	0.000000	N
+hsa-mir-4766	5	2.029059	N
+hsa-mir-4767	1	0.405812	N
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+hsa-mir-4787	4	1.623247	N
+hsa-mir-4788	0	0.000000	N
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+hsa-mir-483	7	2.840682	N
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+hsa-mir-486-2	7	2.840682	N
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+hsa-mir-532	1808	733.707573	N
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+hsa-mir-541	2	0.811623	N
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+hsa-mir-548d-2	1	0.405812	N
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+hsa-mir-548f-1	1	0.405812	N
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+hsa-mir-548m	0	0.000000	N
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+hsa-mir-548o	1	0.405812	N
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+hsa-mir-548p	0	0.000000	N
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+hsa-mir-548s	2	0.811623	N
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+hsa-mir-548v	2	0.811623	N
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+hsa-mir-548z	0	0.000000	N
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+hsa-mir-550a-2	0	0.000000	N
+hsa-mir-550a-3	1	0.405812	N
+hsa-mir-550b-1	0	0.000000	N
+hsa-mir-550b-2	0	0.000000	N
+hsa-mir-551a	1	0.405812	N
+hsa-mir-551b	6	2.434870	N
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+hsa-mir-553	0	0.000000	N
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+hsa-mir-555	0	0.000000	N
+hsa-mir-556	3	1.217435	N
+hsa-mir-557	0	0.000000	N
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+hsa-mir-5572	0	0.000000	N
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+hsa-mir-558	0	0.000000	N
+hsa-mir-5580	1	0.405812	N
+hsa-mir-5581	1	0.405812	N
+hsa-mir-5582	0	0.000000	N
+hsa-mir-5583-1	0	0.000000	N
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+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	1	0.405812	N
+hsa-mir-766	28	11.362728	N
+hsa-mir-767	5	2.029059	N
+hsa-mir-769	152	61.683380	N
+hsa-mir-770	0	0.000000	N
+hsa-mir-7702	9	3.652305	N
+hsa-mir-7703	0	0.000000	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	11	4.463929	N
+hsa-mir-7706	11	4.463929	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	0	0.000000	N
+hsa-mir-7845	2	0.811623	N
+hsa-mir-7846	0	0.000000	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	1	0.405812	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	0	0.000000	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	1	0.405812	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
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+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
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+hsa-mir-8065	0	0.000000	N
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+hsa-mir-877	32	12.985975	N
+hsa-mir-885	1	0.405812	N
+hsa-mir-887	155	62.900815	N
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+hsa-mir-889	6	2.434870	N
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+hsa-mir-9-1	134	54.378769	N
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+hsa-mir-92a-1	8138	3302.495701	N
+hsa-mir-92a-2	7282	2955.120877	N
+hsa-mir-92b	210	85.220459	N
+hsa-mir-93	9319	3781.759332	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	0	0.000000	N
+hsa-mir-935	3	1.217435	N
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+hsa-mir-937	41	16.638280	N
+hsa-mir-938	3	1.217435	N
+hsa-mir-939	10	4.058117	N
+hsa-mir-940	79	32.059125	N
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+hsa-mir-95	7	2.840682	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	66	26.783573	N
+hsa-mir-98	61	24.754514	N
+hsa-mir-99a	300	121.743513	N
+hsa-mir-99b	137613	55844.966941	N

data/gdc_data_organized/1402082d-25c9-4148-8a1e-f58450b706bb/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.grch38.seg.v2.txt

@@ -0,0 +1,362 @@
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