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README.md

@@ -11,7 +11,7 @@ tags:
 
 # WSI test data
 
-WSI test slides for the [opentile](https://github.com/imi-bigpicture/opentile) and [wsidicomizer](https://github.com/imi-bigpicture/wsidicomizer) test suites, mirrored here for fast, reliable CI downloads. Each slide folder holds a self-contained `metadata.json`; the root `index.json` is the aggregate. Each slide's original source, license, credit and attribution are in its `metadata.json`.
+WSI test slides for the [opentile](https://github.com/imi-bigpicture/opentile), [wsidicomizer](https://github.com/imi-bigpicture/wsidicomizer) and [wsidicom](https://github.com/imi-bigpicture/wsidicom) test suites, mirrored here for fast, reliable CI downloads. Each slide folder holds a self-contained `metadata.json`; the root `index.json` is the aggregate. Each slide's original source, license, credit and attribution are in its `metadata.json`.
 
 | File | Source | License | Credit |
 |---|---|---|---|
@@ -29,6 +29,12 @@ WSI test slides for the [opentile](https://github.com/imi-bigpicture/opentile) a
 | `svs/CMU-1-JP2K-33005/CMU-1-JP2K-33005.svs` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-JP2K-33005.svs) | CC0-1.0 | - |
 | `mirax/CMU-1/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/Mirax/CMU-1.zip) | CC0-1.0 | - |
 | `isyntax/isyntax1/testslide.isyntax` | [source](https://doi.org/10.5281/zenodo.5037046) | MIT | Bioimage Informatics Group (Ruusuvuori lab) |
+| `dicom/3DHISTECH-1/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/3DHISTECH-1.zip) | CC0-1.0 | - |
+| `dicom/CMU-1-JP2K-33005/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/CMU-1-JP2K-33005.zip) | CC0-1.0 | - |
+| `dicom/JP2K-33003-1/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/JP2K-33003-1.zip) | distributable | - |
+| `dicom/Leica-4/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/Leica-4.zip) | CC0-1.0 | - |
+| `dicom/Hamamatsu-2/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/Hamamatsu-2.zip) | CC0-1.0 | - |
+| `dicom/Hamamatsu-Case-A/` | [source](ftp://medical.nema.org/MEDICAL/Dicom/DataSets/WG26/WG26Connectathon2023_ECDP/DICOM/Hamamatsu/Case-A) | CC0-1.0 | - |
 
 ## Licenses
 

dicom/3DHISTECH-1/metadata.json

@@ -0,0 +1,8 @@
+{
+  "3DHISTECH-1": {
+    "description": "Small intestine, brightfield, DICOM WSI, TILED_FULL, JPEG, WG26 2021 hackathon",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/3DHISTECH-1.zip",
+    "license": "CC0-1.0"
+  }
+}

dicom/CMU-1-JP2K-33005/metadata.json

@@ -0,0 +1,8 @@
+{
+  "CMU-1-JP2K-33005": {
+    "description": "Conversion of CMU-1-JP2K-33005.svs, DICOM WSI, TILED_FULL, JPEG 2000",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/CMU-1-JP2K-33005.zip",
+    "license": "CC0-1.0"
+  }
+}

dicom/Hamamatsu-2/metadata.json

@@ -0,0 +1,8 @@
+{
+  "Hamamatsu-2": {
+    "description": "H&E, brightfield, DICOM WSI, TILED_FULL, EOT, Hamamatsu NanoZoomer S20MD",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/Hamamatsu-2.zip",
+    "license": "CC0-1.0"
+  }
+}

dicom/Hamamatsu-Case-A/metadata.json

@@ -0,0 +1,8 @@
+{
+  "Hamamatsu-Case-A": {
+    "description": "Breast (cancer) H&E, brightfield, DICOM WSI, TILED_FULL, BOT, WG26 2023 connectathon (CC0)",
+    "format": "DICOM WSI",
+    "source": "ftp://medical.nema.org/MEDICAL/Dicom/DataSets/WG26/WG26Connectathon2023_ECDP/DICOM/Hamamatsu/Case-A",
+    "license": "CC0-1.0"
+  }
+}

dicom/JP2K-33003-1/metadata.json

@@ -0,0 +1,8 @@
+{
+  "JP2K-33003-1": {
+    "description": "Conversion of JP2K-33003-1.svs, aorta, DICOM WSI, TILED_FULL, JPEG 2000",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/JP2K-33003-1.zip",
+    "license": "distributable"
+  }
+}

dicom/Leica-4/metadata.json

@@ -0,0 +1,8 @@
+{
+  "Leica-4": {
+    "description": "Brightfield, DICOM WSI, TILED_SPARSE, JPEG, Leica GT450, WG26 PV22 connectathon",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/Leica-4.zip",
+    "license": "CC0-1.0"
+  }
+}

index.json

@@ -117,5 +117,41 @@
     "credit": "Bioimage Informatics Group (Ruusuvuori lab)",
     "sha256": "38e65f4ddd2001f18135a1835807cb5b2303d012a2a63d63cdfa08a9673c849d",
     "size": 495125898
+  },
+  "dicom/3DHISTECH-1": {
+    "description": "Small intestine, brightfield, DICOM WSI, TILED_FULL, JPEG, WG26 2021 hackathon",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/3DHISTECH-1.zip",
+    "license": "CC0-1.0"
+  },
+  "dicom/CMU-1-JP2K-33005": {
+    "description": "Conversion of CMU-1-JP2K-33005.svs, DICOM WSI, TILED_FULL, JPEG 2000",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/CMU-1-JP2K-33005.zip",
+    "license": "CC0-1.0"
+  },
+  "dicom/JP2K-33003-1": {
+    "description": "Conversion of JP2K-33003-1.svs, aorta, DICOM WSI, TILED_FULL, JPEG 2000",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/JP2K-33003-1.zip",
+    "license": "distributable"
+  },
+  "dicom/Leica-4": {
+    "description": "Brightfield, DICOM WSI, TILED_SPARSE, JPEG, Leica GT450, WG26 PV22 connectathon",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/Leica-4.zip",
+    "license": "CC0-1.0"
+  },
+  "dicom/Hamamatsu-2": {
+    "description": "H&E, brightfield, DICOM WSI, TILED_FULL, EOT, Hamamatsu NanoZoomer S20MD",
+    "format": "DICOM WSI",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/DICOM/Hamamatsu-2.zip",
+    "license": "CC0-1.0"
+  },
+  "dicom/Hamamatsu-Case-A": {
+    "description": "Breast (cancer) H&E, brightfield, DICOM WSI, TILED_FULL, BOT, WG26 2023 connectathon (CC0)",
+    "format": "DICOM WSI",
+    "source": "ftp://medical.nema.org/MEDICAL/Dicom/DataSets/WG26/WG26Connectathon2023_ECDP/DICOM/Hamamatsu/Case-A",
+    "license": "CC0-1.0"
   }
 }