Upload folder using huggingface_hub

LICENSES/MIT.txt

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 Bioimage informatics group (Ruusuvuori lab)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

@@ -11,7 +11,7 @@ tags:
 
 # WSI test data
 
-WSI test slides for the [opentile](https://github.com/imi-bigpicture/opentile) test suite, mirrored here for fast, reliable CI downloads. Each slide folder holds a self-contained `metadata.json`; the root `index.json` is the aggregate. Each slide's original source, license, credit and attribution are in its `metadata.json`.
+WSI test slides for the [opentile](https://github.com/imi-bigpicture/opentile) and [wsidicomizer](https://github.com/imi-bigpicture/wsidicomizer) test suites, mirrored here for fast, reliable CI downloads. Each slide folder holds a self-contained `metadata.json`; the root `index.json` is the aggregate. Each slide's original source, license, credit and attribution are in its `metadata.json`.
 
 | File | Source | License | Credit |
 |---|---|---|---|
@@ -25,8 +25,16 @@ WSI test slides for the [opentile](https://github.com/imi-bigpicture/opentile) t
 | `argos/Argos-1-Stacked/Argos-1-Stacked.avs` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/Argos/Argos-1-Stacked.avs) | CC0-1.0 | - |
 | `qptiff/HandEcompressed/HandEcompressed_Scan1.qptiff` | [source](https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_scans/HandEcompressed_Scan1.qptiff) | CC-BY-4.0 | PerkinElmer |
 | `qptiff/LuCa-7color/LuCa-7color_Scan1.qptiff` | [source](https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_scans/LuCa-7color_Scan1.qptiff) | CC-BY-4.0 | PerkinElmer |
+| `svs/JP2K-33003-1/JP2K-33003-1.svs` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/JP2K-33003-1.svs) | distributable | - |
+| `svs/CMU-1-JP2K-33005/CMU-1-JP2K-33005.svs` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-JP2K-33005.svs) | CC0-1.0 | - |
+| `mirax/CMU-1/` | [source](https://openslide.cs.cmu.edu/download/openslide-testdata/Mirax/CMU-1.zip) | CC0-1.0 | - |
+| `isyntax/isyntax1/testslide.isyntax` | [source](https://doi.org/10.5281/zenodo.5037046) | MIT | Bioimage Informatics Group (Ruusuvuori lab) |
 
 ## Licenses
 
 - **CC0-1.0** - public-domain dedication (`LICENSES/CC0-1.0.txt`); no conditions.
 - **CC-BY-4.0** - `LICENSES/CC-BY-4.0.txt`; requires attribution, carried in each qptiff slide's `metadata.json` `attribution` field (creator + license link).
+- **distributable** - openslide's tag for slides that may be freely redistributed but carry no formal SPDX license (see the openslide testdata index); credit is preserved in each slide's `metadata.json`.
+- **MIT** - `LICENSES/MIT.txt`; requires preserving the copyright notice.
+
+`mirax/CMU-1/` is a multi-file MIRAX slide (folder of members), so its `index.json` entry is folder-level with no single checksum; per-member checksums live in the consuming test suite.

index.json

@@ -7,6 +7,22 @@
     "sha256": "00a3d54482cd707abf254fe69dccc8d06b8ff757a1663f1290c23418c480eb30",
     "size": 177552579
   },
+  "svs/JP2K-33003-1/JP2K-33003-1.svs": {
+    "description": "Aorta tissue, brightfield, JPEG 2000, YCbCr",
+    "format": "Aperio SVS",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/JP2K-33003-1.svs",
+    "license": "distributable",
+    "sha256": "6205ccf75a8fa6c32df7c5c04b7377398971a490fb6b320d50d91f7ba6a0e6fd",
+    "size": 63847265
+  },
+  "svs/CMU-1-JP2K-33005/CMU-1-JP2K-33005.svs": {
+    "description": "Export of CMU-1.svs, brightfield, JPEG 2000, ICT",
+    "format": "Aperio SVS",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-JP2K-33005.svs",
+    "license": "CC0-1.0",
+    "sha256": "9a1923cd9bcb260ba4d99d64f8d6e32550648c332ba48817f920662f3a513420",
+    "size": 132565343
+  },
   "ndpi/CMU-1/CMU-1.ndpi": {
     "description": "Small scan with valid JPEG headers, brightfield, circa 2009",
     "format": "Hamamatsu NDPI",
@@ -86,5 +102,20 @@
     "attribution": "(c) PerkinElmer (http://www.perkinelmer.com). Licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0), https://creativecommons.org/licenses/by/4.0/. The image content is unchanged.",
     "sha256": "0a0558670a479d826f13e467fd7e50cb6d691c9b4009d86bf579d1a0f3c526dc",
     "size": 2090277544
+  },
+  "mirax/CMU-1": {
+    "description": "Brightfield, JPEG, MIRAX (multi-file), CURRENT_SLIDE_VERSION 1.9",
+    "format": "MIRAX",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/Mirax/CMU-1.zip",
+    "license": "CC0-1.0"
+  },
+  "isyntax/isyntax1/testslide.isyntax": {
+    "description": "iSyntax test slide from the OpenPhi project",
+    "format": "Philips iSyntax",
+    "source": "https://doi.org/10.5281/zenodo.5037046",
+    "license": "MIT",
+    "credit": "Bioimage Informatics Group (Ruusuvuori lab)",
+    "sha256": "38e65f4ddd2001f18135a1835807cb5b2303d012a2a63d63cdfa08a9673c849d",
+    "size": 495125898
   }
-}
+}

isyntax/isyntax1/metadata.json

@@ -0,0 +1,11 @@
+{
+  "testslide.isyntax": {
+    "description": "iSyntax test slide from the OpenPhi project",
+    "format": "Philips iSyntax",
+    "source": "https://doi.org/10.5281/zenodo.5037046",
+    "license": "MIT",
+    "credit": "Bioimage Informatics Group (Ruusuvuori lab)",
+    "sha256": "38e65f4ddd2001f18135a1835807cb5b2303d012a2a63d63cdfa08a9673c849d",
+    "size": 495125898
+  }
+}

mirax/CMU-1/metadata.json

@@ -0,0 +1,8 @@
+{
+  "CMU-1.mrxs": {
+    "description": "Brightfield, JPEG, MIRAX (multi-file), CURRENT_SLIDE_VERSION 1.9",
+    "format": "MIRAX",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/Mirax/CMU-1.zip",
+    "license": "CC0-1.0"
+  }
+}

svs/CMU-1-JP2K-33005/metadata.json

@@ -0,0 +1,10 @@
+{
+  "CMU-1-JP2K-33005.svs": {
+    "description": "Export of CMU-1.svs, brightfield, JPEG 2000, ICT",
+    "format": "Aperio SVS",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-JP2K-33005.svs",
+    "license": "CC0-1.0",
+    "sha256": "9a1923cd9bcb260ba4d99d64f8d6e32550648c332ba48817f920662f3a513420",
+    "size": 132565343
+  }
+}

svs/JP2K-33003-1/metadata.json

@@ -0,0 +1,10 @@
+{
+  "JP2K-33003-1.svs": {
+    "description": "Aorta tissue, brightfield, JPEG 2000, YCbCr",
+    "format": "Aperio SVS",
+    "source": "https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/JP2K-33003-1.svs",
+    "license": "distributable",
+    "sha256": "6205ccf75a8fa6c32df7c5c04b7377398971a490fb6b320d50d91f7ba6a0e6fd",
+    "size": 63847265
+  }
+}