File size: 1,924 Bytes
0161e74
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
#!/bin/sh
#PJM -L rscgrp=b-batch
#PJM -L gpu=1
#PJM -L elapse=3:00:00
#PJM -N eval_baseline
#PJM -j
#PJM -o logs/eval_baseline_%j.out

module load cuda/12.2.2
module load cudnn/8.9.7
module load gcc-toolset/12

source /home/hp250092/ku50001222/qian/aivc/lfj/ori_scDFM_env/bin/activate
cd /home/hp250092/ku50001222/qian/aivc/lfj/transfer/code/ori_scDFM

export PYTHONPATH=./
export PYTORCH_CUDA_ALLOC_CONF=max_split_size_mb:256

CKPT="/home/hp250092/ku50001222/qian/aivc/lfj/transfer/CCFM_result/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30/iteration_100000/checkpoint.pt"

echo "=========================================="
echo "Job ID:    $PJM_JOBID"
echo "Job Name:  $PJM_JOBNAME"
echo "Start:     $(date)"
echo "Node:      $(hostname)"
echo "GPU:       $(nvidia-smi --query-gpu=name,memory.total --format=csv,noheader 2>/dev/null || echo 'N/A')"
echo "Eval:      Baseline (ori_scDFM) iteration_100000"
echo "=========================================="

python src/script/run.py \
    --batch_size=48 \
    --devices='0' \
    --model_type=origin \
    --lr=5e-5 \
    --steps=200000 \
    --data_name=norman \
    --d_model=128 \
    --eta_min=1e-6 \
    --fusion_method=differential_perceiver \
    --infer_top_gene=1000 \
    --n_top_genes=5000 \
    --perturbation_function=crisper \
    --noise_type=Gaussian \
    --mode=predict_y \
    --gamma=0.5 \
    --split_method=additive \
    --use_mmd_loss \
    --fold=1 \
    --topk=30 \
    --use_negative_edge \
    --print_every=10000 \
    --result_path=/home/hp250092/ku50001222/qian/aivc/lfj/transfer/CCFM_result \
    --checkpoint_path="$CKPT" \
    --test_only

echo "=========================================="
echo "Finished:  $(date)"
echo "=========================================="