File size: 2,000 Bytes
0161e74 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 | #!/bin/bash
# Master submission script for all perturbation conditions.
#
# Usage:
# Phase 1: bash code/prompt_selection/submit_all.sh shared
# (Submit shared steps, wait for completion)
#
# Phase 2: bash code/prompt_selection/submit_all.sh perturbations
# (Submit all per-perturbation pipeline + baseline jobs)
#
# Phase 3: bash code/prompt_selection/run_eval_all.sh
# (Run evaluation on login node after all GPU jobs complete)
cd /home/hp250092/ku50001222/qian/aivc/lfj/transfer
mkdir -p logs
PERTURBATIONS=(
"Belinostat"
"CHIR-99021"
"Crizotinib"
"Dabrafenib"
"Dactolisib"
"Foretinib"
"Idelalisib"
"LDN 193189"
"Linagliptin"
"O-Demethylated Adapalene"
"Palbociclib"
"Penfluridol"
"Porcn Inhibitor III"
"R428"
)
case "$1" in
shared)
echo "=== Submitting shared steps ==="
pjsub code/prompt_selection/run_shared.sh
echo ""
echo "Wait for the shared job to complete, then run:"
echo " bash code/prompt_selection/submit_all.sh perturbations"
;;
perturbations)
echo "=== Submitting per-perturbation jobs ==="
for PERT in "${PERTURBATIONS[@]}"; do
echo "Submitting: $PERT"
# Pipeline (prompt selection)
pjsub -x PERT_NAME="$PERT" code/prompt_selection/run_pert.sh
# Baseline (random prompt)
pjsub -x PERT_NAME="$PERT" code/prompt_selection/run_baseline_pert.sh
done
echo ""
echo "Submitted ${#PERTURBATIONS[@]} pipeline + ${#PERTURBATIONS[@]} baseline jobs."
echo "After all jobs complete, run evaluation:"
echo " bash code/prompt_selection/run_eval_all.sh"
;;
*)
echo "Usage: $0 {shared|perturbations}"
echo ""
echo " shared Submit shared steps (run first)"
echo " perturbations Submit all per-perturbation jobs (run after shared completes)"
exit 1
;;
esac
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