| __version__ = "0.2.4" | |
| import logging | |
| import sys | |
| logger = logging.getLogger("scGPT") | |
| # check if logger has been initialized | |
| if not logger.hasHandlers() or len(logger.handlers) == 0: | |
| logger.propagate = False | |
| logger.setLevel(logging.INFO) | |
| handler = logging.StreamHandler(sys.stdout) | |
| handler.setLevel(logging.INFO) | |
| formatter = logging.Formatter( | |
| "%(name)s - %(levelname)s - %(message)s", datefmt="%H:%M:%S" | |
| ) | |
| handler.setFormatter(formatter) | |
| logger.addHandler(handler) | |
| from . import model, tokenizer, scbank, utils, tasks | |
| from .data_collator import DataCollator | |
| from .data_sampler import SubsetsBatchSampler | |
| from .trainer import ( | |
| prepare_data, | |
| prepare_dataloader, | |
| train, | |
| define_wandb_metrcis, | |
| evaluate, | |
| eval_testdata, | |
| test, | |
| ) | |