""" Scalar latent layers for grn_scalar. MultiStatsLatentEncoder: (B, G, 4) → (B, G, d_model) — for agg_mode='multi_stats' ScalarLatentDecoder: (B, G, 2*d_model) → (B, G, latent_dim) — symmetric with ExprDecoder For agg_mode='signed_l2' (latent_dim=1), the encoder is ContinuousValueEncoder from scDFM (reused directly in model.py), so no custom encoder class is needed. """ import torch.nn as nn class MultiStatsLatentEncoder(nn.Module): """ Encodes 4-dim per-gene statistics to d_model embedding. Mirrors ContinuousValueEncoder structure: Linear → ReLU → Linear → LN → Dropout. """ def __init__(self, d_model: int, dropout: float = 0.1): super().__init__() self.linear1 = nn.Linear(4, d_model) self.activation = nn.ReLU() self.linear2 = nn.Linear(d_model, d_model) self.norm = nn.LayerNorm(d_model) self.dropout = nn.Dropout(p=dropout) def forward(self, x): """x: (B, G, 4) → (B, G, d_model)""" x = self.activation(self.linear1(x)) x = self.linear2(x) x = self.norm(x) return self.dropout(x) class ScalarLatentDecoder(nn.Module): """ Decodes backbone output to scalar (or 4-dim) latent velocity. Symmetric with ExprDecoder: input is (B, G, 2*d_model) from backbone+pert_emb concat. """ def __init__(self, d_model: int, latent_dim: int = 1): super().__init__() self.latent_dim = latent_dim self.fc = nn.Sequential( nn.Linear(2 * d_model, d_model), nn.LeakyReLU(), nn.Linear(d_model, d_model), nn.LeakyReLU(), nn.Linear(d_model, latent_dim), ) def forward(self, x): """ x: (B, G, 2*d_model) — backbone output concatenated with pert_emb Returns: (B, G) if latent_dim=1, else (B, G, latent_dim) """ out = self.fc(x) if self.latent_dim == 1: return out.squeeze(-1) return out