checkpoint_path: "Stack-Large/bc_large.ckpt"
dataset_configs:
  - "human:parse_bio:sample:cell_type:false"
  - "human:Stack-CellxGene45M:donor_id:author_cell_type:true:feature_name"
genelist_path: "Stack-Large-Aligned/basecount_1000per_15000max.pkl"
save_dir: "stack_checkpoints/bc_large_aligned"
max_epochs: 8
sample_size: 512
batch_size: 8
accumulate_grad_batches: 4
num_workers: 4
learning_rate: 0.00002
weight_decay: 0.003
scheduler_eta_min: 0.000005
replacement_ratio: 0.75
scheduler: cosine
scheduler_T_max: 8
scheduler_warmup_epochs: 1
early_stopping_patience: 5
cache_file: "cache/parse_cgft.pkl"