| { |
| "line": "C32", |
| "truth": "/mnt/ssd/scdistill_data/arc_data/tahoe_holdout_h5ad/c26.h5ad", |
| "plate_filter": "plate10", |
| "train_plates": "all", |
| "split_toml": "/mnt/ssd/scdistill_data/arc_state_se/st_hvg_tahoe/fewshot/generalization.toml", |
| "teacher_sim": "/mnt/ssd/scdistill_data/scdistill_fewshot/C32_simulated_fewshot.h5ad", |
| "fewshot_test_only": true, |
| "inductive": false, |
| "kd_space": "raw", |
| "null_teacher": "none", |
| "student_arch": "state_xs", |
| "steps": 800000, |
| "bs": 256, |
| "dim": 2000, |
| "seed": 0, |
| "n_drugs": 417, |
| "distill_mode": "energy", |
| "param_total_m": 3.211472, |
| "param_active_m": 3.211472, |
| "flow_pairing": "ot", |
| "flow_rollout": "onpolicy", |
| "flow_roll_steps": 4, |
| "flow_lambda": 0.1, |
| "flow_end_steps": 4, |
| "ode_steps": 10, |
| "ode_method": "euler", |
| "val_frac": 0.15, |
| "eval_every": 1000, |
| "val_policy": "strict", |
| "val_target": "own", |
| "val_metric": "pearson_delta", |
| "val_inductive_frac": 0.0, |
| "log_test_trace": false, |
| "n_inductive_val_perts": 0, |
| "val_on_state_val": false, |
| "val_mode": "transductive", |
| "n_state_val_perts": 0, |
| "early_stop_patience": 200, |
| "early_stop_min_delta": 0.0001, |
| "early_stop_ema": 0.3, |
| "early_stop_min_steps": 120000, |
| "distill_residual": false, |
| "shape_gamma": 0.0, |
| "shape_n_proj": 50, |
| "shape_var_gamma": 0.0, |
| "shape_in_whitened": false, |
| "shape_whiten_rank": 0, |
| "wkdf_gamma": 1.0, |
| "wkdf_ratio": 2.0, |
| "wkdf_eps": 1e-05, |
| "wkdf_shape_gamma": 0.0, |
| "wkdf_shape_mode": "centred", |
| "reward_gamma": 0.0, |
| "reward_scramble": false, |
| "feat_gamma": 0.0, |
| "featalign_scramble": false, |
| "huber_gamma": 0.0, |
| "huber_delta": 0.9, |
| "teacher_denoise_rank": 0, |
| "teacher_denoise_mode": "truncate", |
| "fusion_mode": "off", |
| "fusion_scramble": false, |
| "laplacian_gamma": 0.0, |
| "laplacian_k": 15, |
| "laplacian_normalized": 1, |
| "laplacian_scramble": false, |
| "whiten_rank": 0, |
| "whiten_alpha": 1.0, |
| "whiten_shrink": 0.05, |
| "whiten_gmin": 0.2, |
| "whiten_gmax": 3.0, |
| "whiten_source": "delta", |
| "mbar_l2_norm": null, |
| "convergence": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 261000, |
| "best_val": 0.6860592834730338, |
| "final_val": 0.6762816764891277, |
| "n_evals": 463, |
| "validated": true, |
| "val_trace": [ |
| 0.14899125238189456, |
| 0.4230388411319378, |
| 0.4097645461995295, |
| 0.4920016956475046, |
| 0.502944268530206, |
| 0.4654507363818355, |
| 0.556866633907958, |
| 0.5347093676470456, |
| 0.5512998335989777, |
| 0.5292049498805034, |
| 0.5745152004921796, |
| 0.5762720242134217, |
| 0.5678207171837899, |
| 0.5859076536515856, |
| 0.5848183798339798, |
| 0.5814624696192182, |
| 0.5885594450549124, |
| 0.5917392225411167, |
| 0.6128005679957419, |
| 0.5908171473899729, |
| 0.5974815304635053, |
| 0.6074882816173107, |
| 0.613048454343638, |
| 0.61431284274696, |
| 0.6320826946911413, |
| 0.6249730990140151, |
| 0.6314355054203281, |
| 0.6206834452941576, |
| 0.6229818558940369, |
| 0.5988961281675144, |
| 0.6324008703350359, |
| 0.6250693481332189, |
| 0.6278991294989417, |
| 0.6291387983192804, |
| 0.634497351763853, |
| 0.6268493060963409, |
| 0.6440843833609857, |
| 0.6428000883663199, |
| 0.6460117497906426, |
| 0.6527933080171356, |
| 0.6537202568375562, |
| 0.6357155371373446, |
| 0.6516987272980189, |
| 0.6523459162502452, |
| 0.6385409413550571, |
| 0.6589873665577909, |
| 0.6572760985342252, |
| 0.6353228452124184, |
| 0.6546326937990259, |
| 0.6538831914782636, |
| 0.6608287204568433, |
| 0.6419756732107837, |
| 0.6611074115727245, |
| 0.6620144913920062, |
| 0.6528233330016223, |
| 0.6686903299100843, |
| 0.6567305652232036, |
| 0.6516037280355842, |
| 0.6571983174402006, |
| 0.6385738896879842, |
| 0.6663617315054287, |
| 0.6605364063172298, |
| 0.6750885098129551, |
| 0.6712932171331104, |
| 0.6668749251363668, |
| 0.6525515219805825, |
| 0.6543524551117474, |
| 0.6581079437857759, |
| 0.6635833191572643, |
| 0.6677671762680926, |
| 0.6665501536635795, |
| 0.664528683354003, |
| 0.671438004802885, |
| 0.6623860674936352, |
| 0.674565668849728, |
| 0.6702304112296132, |
| 0.6714069067706698, |
| 0.6748808342724633, |
| 0.6715439801316891, |
| 0.6546712998807783, |
| 0.6622270028583871, |
| 0.6686852573611323, |
| 0.6730902190287413, |
| 0.6648406861862232, |
| 0.6741076906133087, |
| 0.6632885737680038, |
| 0.6614728888171365, |
| 0.6763224254550261, |
| 0.6651553120453383, |
| 0.6658458559584399, |
| 0.6685489525792914, |
| 0.6652765388351639, |
| 0.6733572425600187, |
| 0.6685049867410738, |
| 0.6620610225951871, |
| 0.6714630919631649, |
| 0.6718832873348362, |
| 0.6718860297533625, |
| 0.6737826698878256, |
| 0.6727526675247801, |
| 0.6769928321397346, |
| 0.6620221538823297, |
| 0.6776382371014843, |
| 0.6732660277624222, |
| 0.6745472708123681, |
| 0.6727025849597813, |
| 0.6748515805305206, |
| 0.6707365290931498, |
| 0.6779360699720249, |
| 0.6771185921443762, |
| 0.6741536462351613, |
| 0.6689585546542595, |
| 0.6790942205457031, |
| 0.6740398352487841, |
| 0.6698784437112651, |
| 0.6751119897050224, |
| 0.677218439977563, |
| 0.6778191839942327, |
| 0.672374672434873, |
| 0.6717300394778177, |
| 0.6800247565837143, |
| 0.6771993422557635, |
| 0.6749805312461666, |
| 0.6709170271350454, |
| 0.6814742031442372, |
| 0.6724888679478563, |
| 0.6772941469399144, |
| 0.6721943872344688, |
| 0.6727701665862188, |
| 0.6804628460888208, |
| 0.6846019114339967, |
| 0.6728606262368033, |
| 0.6806848886908842, |
| 0.6687132875601421, |
| 0.6669477379669384, |
| 0.6787651921244311, |
| 0.6796446653130737, |
| 0.6774055482975438, |
| 0.6785534271018715, |
| 0.672401576430132, |
| 0.6715359917335063, |
| 0.6778473157067132, |
| 0.6818497743454845, |
| 0.6766213784482247, |
| 0.6776551260826523, |
| 0.6666380517830053, |
| 0.6796389743362301, |
| 0.6768562334976971, |
| 0.6764134267025385, |
| 0.6788706919556242, |
| 0.6722860265148026, |
| 0.6778132330313089, |
| 0.6813201535450268, |
| 0.67801214587864, |
| 0.6799627333969006, |
| 0.6757876532756355, |
| 0.6760291002906772, |
| 0.6795074030564834, |
| 0.6810378835766076, |
| 0.6701057438758242, |
| 0.6808775914372763, |
| 0.6809878450984073, |
| 0.6795772177569753, |
| 0.6797629363872364, |
| 0.6757581553425241, |
| 0.6803281041190878, |
| 0.6789507651354688, |
| 0.6778684481019946, |
| 0.6784076516507773, |
| 0.6785026144978034, |
| 0.6815929448191044, |
| 0.6724458871674001, |
| 0.6789845126562629, |
| 0.673886001594579, |
| 0.6823887235458488, |
| 0.6794529505495086, |
| 0.6776760381389684, |
| 0.6789633093577002, |
| 0.680943563842077, |
| 0.6751522636921686, |
| 0.6786686297704378, |
| 0.675057496011475, |
| 0.6573458102652239, |
| 0.6784108683209757, |
| 0.6794562011777358, |
| 0.6796325104395453, |
| 0.6760046794628763, |
| 0.6777602960646035, |
| 0.6781416831902685, |
| 0.6750311121132054, |
| 0.6839463902412981, |
| 0.6778852480907334, |
| 0.6724240339133055, |
| 0.6762142256476512, |
| 0.6801456810870993, |
| 0.6713750827586201, |
| 0.6770221604326863, |
| 0.6812044521914873, |
| 0.6742440626578098, |
| 0.6749354459964979, |
| 0.6788626491544943, |
| 0.6778042083446649, |
| 0.6797842814231526, |
| 0.672688082343392, |
| 0.6757020969700703, |
| 0.681117619679317, |
| 0.6823252309201139, |
| 0.6759691266255204, |
| 0.6806557332775263, |
| 0.6751071727008865, |
| 0.6800487944284521, |
| 0.6841691485772482, |
| 0.67589713349814, |
| 0.675160921830252, |
| 0.6841608887200795, |
| 0.6825550672213943, |
| 0.6820233954759876, |
| 0.6827005268866211, |
| 0.6828814324162312, |
| 0.6406855313285867, |
| 0.6826278756283386, |
| 0.684990337521283, |
| 0.6826216807159969, |
| 0.6824190991574444, |
| 0.6819686377119673, |
| 0.6804362387693906, |
| 0.6776358255701191, |
| 0.6804553815160023, |
| 0.6828270509837024, |
| 0.6812169846255085, |
| 0.6774132087870971, |
| 0.6841740959338337, |
| 0.6838717962086612, |
| 0.6824142054676902, |
| 0.6830609159081061, |
| 0.6767153183907153, |
| 0.6766345462238736, |
| 0.677259949021188, |
| 0.6826631823020599, |
| 0.6821008655892216, |
| 0.6804063283863614, |
| 0.6821870184397351, |
| 0.6835117382743696, |
| 0.6826217791249195, |
| 0.6812809510549735, |
| 0.6779539901828694, |
| 0.6781599315919528, |
| 0.6812622134030499, |
| 0.6788105172377731, |
| 0.6780621211490264, |
| 0.6815905869269065, |
| 0.6799313000532761, |
| 0.6827881115438102, |
| 0.683476225530054, |
| 0.6832034789639688, |
| 0.6836290191239335, |
| 0.6834859929183132, |
| 0.6826636025737877, |
| 0.6773337304218336, |
| 0.6798990381021974, |
| 0.6799591245330406, |
| 0.6860592834730338, |
| 0.6857270210319175, |
| 0.6809865929409433, |
| 0.6848086865804802, |
| 0.6745116495142374, |
| 0.68129764415133, |
| 0.6824181314061243, |
| 0.6849731680062273, |
| 0.68263158234865, |
| 0.6798988305626628, |
| 0.6777323847142439, |
| 0.6746807698239051, |
| 0.6815650179329621, |
| 0.6788921654076779, |
| 0.6811211656720605, |
| 0.6826562381582658, |
| 0.6790241608186748, |
| 0.6851895869561111, |
| 0.6811434426024118, |
| 0.6799420754635951, |
| 0.6633233577750575, |
| 0.6767737584673491, |
| 0.6807087167809434, |
| 0.6815761889812368, |
| 0.6753306526438608, |
| 0.6798440904035791, |
| 0.678654713703971, |
| 0.6794699282653089, |
| 0.6833132725184566, |
| 0.6773064446529792, |
| 0.6791393945466211, |
| 0.6756198661928484, |
| 0.6815194507764453, |
| 0.6791248000542323, |
| 0.6796760796231376, |
| 0.682133253540933, |
| 0.6815234832366702, |
| 0.6849064149437952, |
| 0.6805153639083918, |
| 0.6822868744712551, |
| 0.6799288432924653, |
| 0.6766894611516239, |
| 0.6810752508680772, |
| 0.6771278033701097, |
| 0.6800104320933984, |
| 0.6794051728577205, |
| 0.6804387285847194, |
| 0.6844375706721777, |
| 0.6786833930887642, |
| 0.6806973421349415, |
| 0.6805810018168511, |
| 0.679433697475523, |
| 0.6755272363877715, |
| 0.6838278206665162, |
| 0.6827614757907258, |
| 0.6800160197534741, |
| 0.6763663176402618, |
| 0.677489186897654, |
| 0.6799721920378897, |
| 0.6756697626820981, |
| 0.6805353662245708, |
| 0.6816304578762432, |
| 0.6774055161489932, |
| 0.6822190020702026, |
| 0.6805765330403272, |
| 0.6779249072642863, |
| 0.6814470499310673, |
| 0.6814005992914073, |
| 0.6808095033028284, |
| 0.6810436332894871, |
| 0.6804748746998998, |
| 0.6792833590228886, |
| 0.6791640155923093, |
| 0.6801971876249556, |
| 0.68028943613252, |
| 0.6824120553510492, |
| 0.6799920892801516, |
| 0.6789893998981914, |
| 0.6795530174329264, |
| 0.6771785974093403, |
| 0.681531982422209, |
| 0.6803449998044397, |
| 0.675955496521985, |
| 0.6788847009793486, |
| 0.6801297450566159, |
| 0.682592845725222, |
| 0.6741485502905904, |
| 0.6793104590162802, |
| 0.6750086897967269, |
| 0.6730342158889941, |
| 0.6756481175817285, |
| 0.677330226869214, |
| 0.675473671561719, |
| 0.6797231581493576, |
| 0.6704741291216086, |
| 0.6814120492825402, |
| 0.6818134227866675, |
| 0.6793230096649203, |
| 0.6767062254252924, |
| 0.6804574624600103, |
| 0.6802128669481382, |
| 0.6770124299634952, |
| 0.6784276617490668, |
| 0.6712505259822011, |
| 0.6798680926718986, |
| 0.6790581462015124, |
| 0.6803599210225343, |
| 0.6758996387391012, |
| 0.6770329007469141, |
| 0.6735202226603727, |
| 0.6792608385755687, |
| 0.6775981203302318, |
| 0.6805247898509655, |
| 0.6749428986395637, |
| 0.6778536210323739, |
| 0.6735382220500454, |
| 0.6812906614559113, |
| 0.6801416383148366, |
| 0.6755587508844159, |
| 0.6757284057823836, |
| 0.6790384740848405, |
| 0.6733999467509479, |
| 0.6783330099607291, |
| 0.6768207748139704, |
| 0.6708830319494922, |
| 0.6829819585402385, |
| 0.6809478871562373, |
| 0.6762251988548829, |
| 0.6748955023372339, |
| 0.6816946700203923, |
| 0.6794942119621914, |
| 0.6793973679083694, |
| 0.6745785793632784, |
| 0.6777390457474776, |
| 0.6739413952458384, |
| 0.6736987779104422, |
| 0.6806536023463432, |
| 0.680325358231983, |
| 0.6797806872835435, |
| 0.6813542300421314, |
| 0.674419175937472, |
| 0.6743567425105583, |
| 0.6777105689671106, |
| 0.681928681556311, |
| 0.6798366275692272, |
| 0.6751407056663914, |
| 0.6739394338343216, |
| 0.6743665900645455, |
| 0.6796699135444694, |
| 0.680187226423388, |
| 0.6794921288947404, |
| 0.680427239444451, |
| 0.678291171287426, |
| 0.6784446685320963, |
| 0.6761097457509024, |
| 0.676944992887401, |
| 0.6782084660932924, |
| 0.6774724478808946, |
| 0.6782161926613046, |
| 0.6771075762714345, |
| 0.6779863006926717, |
| 0.6435675777167588, |
| 0.6735858291117729, |
| 0.6757518186687768, |
| 0.6804543420588375, |
| 0.6767608804205909, |
| 0.6693127071110252, |
| 0.6792193282004801, |
| 0.6753881231518184, |
| 0.6780383701208514, |
| 0.6777011240376511, |
| 0.6782774880869623, |
| 0.6753129707298574, |
| 0.6792573111372675, |
| 0.6757537035271425, |
| 0.6771594629930465, |
| 0.678023785328487, |
| 0.681905795221908, |
| 0.68004743446488, |
| 0.6747606975793016, |
| 0.6765123961935762, |
| 0.6771420661736284, |
| 0.675650803312095, |
| 0.6760206565898078, |
| 0.675992113409754, |
| 0.677650054572823, |
| 0.6773627887976061, |
| 0.6754557333440857, |
| 0.677668949743076, |
| 0.6772680939974486, |
| 0.6750055934622705, |
| 0.6756335549103306, |
| 0.6794662707206344, |
| 0.6715764738793097, |
| 0.673334127959059, |
| 0.6747662172852553, |
| 0.6778008084820631, |
| 0.679147959992096, |
| 0.6772580145212428, |
| 0.6768433147444625, |
| 0.6745679345402288, |
| 0.6762816764891277 |
| ], |
| "val_metric": "pearson_delta", |
| "test_trace": null, |
| "val_alt_trace": null, |
| "val_alt_metric": "energy", |
| "early_stopped": true, |
| "stop_step": 462000, |
| "ceiling": 800000, |
| "undertrained": false, |
| "ema_decay": null, |
| "ema_val_trace": null, |
| "ema_test_trace": null, |
| "ema_final_test": null, |
| "ema_best_step": null, |
| "genfrontier_selected": "best_val", |
| "genfrontier_val": 0.6860592834730338, |
| "swa_frac": null, |
| "swa_tail_n": 0 |
| } |
| }, |
| "protocol": { |
| "mode": "production", |
| "family": "cell", |
| "select_metric": "pearson_delta", |
| "val_metric": "pearson_delta", |
| "ceiling": 800000, |
| "eval_every": 1000, |
| "val_frac": 0.15, |
| "val_mode": "transductive", |
| "early_stop_patience": 200, |
| "early_stop_min_steps": 120000, |
| "arms": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 261000, |
| "early_stopped": true, |
| "stop_step": 462000, |
| "ceiling": 800000, |
| "undertrained": false |
| } |
| }, |
| "undertrained": false, |
| "trained_to_full": true, |
| "canonical": "select_metric=pearson_delta val_frac=0.15 eval_every=1000 early_stop_patience=200 early_stop_min_delta=0.0001 early_stop_ema=0.3 early_stop_min_steps=120000 ceiling=800000 (backstop; early-stop fires first, but never before min_steps)" |
| }, |
| "n_toml_test": 735, |
| "n_split_test": 735, |
| "n_split_train": 348, |
| "n_eval_perts": 70, |
| "n_real_train_perts": 347, |
| "energy": { |
| "distilled_plus_wkdf_ccc": { |
| "n_perts": 70, |
| "median_energy_to_truth": 1.862959861755371 |
| }, |
| "teacher": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.13015079498291016 |
| }, |
| "mean": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.2804889678955078 |
| } |
| } |
| } |