| { |
| "line": "C32", |
| "truth": "/mnt/ssd/scdistill_data/arc_data/tahoe_holdout_h5ad/c26.h5ad", |
| "plate_filter": "plate10", |
| "train_plates": "all", |
| "split_toml": "/mnt/ssd/scdistill_data/arc_state_se/st_hvg_tahoe/fewshot/generalization.toml", |
| "teacher_sim": "/mnt/ssd/scdistill_data/scdistill_fewshot/C32_simulated_fewshot.h5ad", |
| "fewshot_test_only": true, |
| "inductive": false, |
| "kd_space": "raw", |
| "null_teacher": "none", |
| "student_arch": "state_xs", |
| "steps": 800000, |
| "bs": 256, |
| "dim": 2000, |
| "seed": 0, |
| "n_drugs": 417, |
| "distill_mode": "energy", |
| "param_total_m": 3.211472, |
| "param_active_m": 3.211472, |
| "flow_pairing": "ot", |
| "flow_rollout": "onpolicy", |
| "flow_roll_steps": 4, |
| "flow_lambda": 0.1, |
| "flow_end_steps": 4, |
| "ode_steps": 10, |
| "ode_method": "euler", |
| "val_frac": 0.15, |
| "eval_every": 1000, |
| "val_policy": "strict", |
| "val_target": "own", |
| "val_metric": "pearson_delta", |
| "val_inductive_frac": 0.0, |
| "log_test_trace": false, |
| "n_inductive_val_perts": 0, |
| "val_on_state_val": false, |
| "val_mode": "transductive", |
| "n_state_val_perts": 0, |
| "early_stop_patience": 200, |
| "early_stop_min_delta": 0.0001, |
| "early_stop_ema": 0.3, |
| "early_stop_min_steps": 120000, |
| "distill_residual": false, |
| "shape_gamma": 0.0, |
| "shape_n_proj": 50, |
| "shape_var_gamma": 0.0, |
| "shape_in_whitened": false, |
| "shape_whiten_rank": 0, |
| "wkdf_gamma": 1.0, |
| "wkdf_ratio": 2.0, |
| "wkdf_eps": 1e-05, |
| "wkdf_shape_gamma": 0.0, |
| "wkdf_shape_mode": "centred", |
| "reward_gamma": 0.0, |
| "reward_scramble": false, |
| "feat_gamma": 0.0, |
| "featalign_scramble": false, |
| "huber_gamma": 0.0, |
| "huber_delta": 0.9, |
| "teacher_denoise_rank": 0, |
| "teacher_denoise_mode": "truncate", |
| "fusion_mode": "off", |
| "fusion_scramble": false, |
| "laplacian_gamma": 0.0, |
| "laplacian_k": 15, |
| "laplacian_normalized": 1, |
| "laplacian_scramble": false, |
| "whiten_rank": 0, |
| "whiten_alpha": 1.0, |
| "whiten_shrink": 0.05, |
| "whiten_gmin": 0.2, |
| "whiten_gmax": 3.0, |
| "whiten_source": "delta", |
| "mbar_l2_norm": null, |
| "convergence": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 232000, |
| "best_val": 0.6860578371798203, |
| "final_val": 0.6795778807497612, |
| "n_evals": 433, |
| "validated": true, |
| "val_trace": [ |
| 0.14899125238189456, |
| 0.4270701577958412, |
| 0.47851855950973143, |
| 0.49661035495241074, |
| 0.473439146434209, |
| 0.5072920238627606, |
| 0.5653505097719076, |
| 0.5513183192659767, |
| 0.5510134239335399, |
| 0.4192103903230322, |
| 0.5722353027417761, |
| 0.5694164577942482, |
| 0.5628103316964296, |
| 0.5770733737569533, |
| 0.5905244376703032, |
| 0.5893621262184113, |
| 0.5864599544599013, |
| 0.596807829543205, |
| 0.6131857929716291, |
| 0.5777301213130209, |
| 0.5995820029266119, |
| 0.6094119349850305, |
| 0.6180120139419399, |
| 0.6156069066388155, |
| 0.6203059566920006, |
| 0.6207066614391562, |
| 0.6279700851755264, |
| 0.6216601281471946, |
| 0.6270605792016832, |
| 0.619758060480513, |
| 0.6305830136216186, |
| 0.6145815887956236, |
| 0.6343719785211358, |
| 0.6180684594436677, |
| 0.6280829081712467, |
| 0.6283793427137455, |
| 0.6414593439138372, |
| 0.6303639854659728, |
| 0.6376259447754916, |
| 0.6426847779564797, |
| 0.6444400059205099, |
| 0.6409075396156318, |
| 0.6521426588951378, |
| 0.6431379676251562, |
| 0.6155092464282341, |
| 0.6538496277036673, |
| 0.6573780699488255, |
| 0.6481975641157918, |
| 0.6317571536257671, |
| 0.6540938397919362, |
| 0.6635916579226014, |
| 0.6449282953524654, |
| 0.6632341778408345, |
| 0.6600618737432621, |
| 0.6309001782111551, |
| 0.6646674250748186, |
| 0.6589877811670046, |
| 0.6572087302717736, |
| 0.6534645613752138, |
| 0.5799740329715581, |
| 0.6564898169474007, |
| 0.6603468003193339, |
| 0.6716897344331342, |
| 0.6701572878520233, |
| 0.6616607481727456, |
| 0.6484471400287626, |
| 0.6622880422213426, |
| 0.6616250226699718, |
| 0.6650394463964261, |
| 0.6682735896194123, |
| 0.6655785662180447, |
| 0.6677750919187575, |
| 0.6704277324637274, |
| 0.6611840031301214, |
| 0.6697699491214736, |
| 0.6651126592687387, |
| 0.6696334142882374, |
| 0.6704600698024096, |
| 0.6700780658675187, |
| 0.660478186431287, |
| 0.6605253640803033, |
| 0.6672157934483135, |
| 0.6683783589173967, |
| 0.6741536594569892, |
| 0.6746811953295972, |
| 0.6638498428639501, |
| 0.6639232861968741, |
| 0.6776714158244728, |
| 0.6686820099863366, |
| 0.6663597589507518, |
| 0.6661303013960386, |
| 0.6647530267116226, |
| 0.6692189619505575, |
| 0.6716348279826104, |
| 0.6706768255658319, |
| 0.6727801217123066, |
| 0.6741999214032449, |
| 0.6713134572517415, |
| 0.6756522591373328, |
| 0.6784874066593335, |
| 0.6777677012228038, |
| 0.6726664547582942, |
| 0.6801351890960514, |
| 0.6758748255273458, |
| 0.6708164138761565, |
| 0.6738066278676305, |
| 0.6767130413681629, |
| 0.6779708840421877, |
| 0.6780190122612725, |
| 0.6765674852005472, |
| 0.6740860539638373, |
| 0.6735771810820845, |
| 0.6519280761446252, |
| 0.6759343648378348, |
| 0.6664082189245463, |
| 0.6761184619242265, |
| 0.6789003220110372, |
| 0.6746652710511237, |
| 0.6771925934873594, |
| 0.6731515798054656, |
| 0.6814562419145291, |
| 0.679188400620366, |
| 0.6757117306761583, |
| 0.6733778750356165, |
| 0.6799505435163048, |
| 0.6801338869070734, |
| 0.6802747965681968, |
| 0.6741775642379496, |
| 0.6771654593446892, |
| 0.6817128668470295, |
| 0.6838068383795275, |
| 0.6782750833328518, |
| 0.6793155507688375, |
| 0.6732084142278016, |
| 0.6723170811341205, |
| 0.6791931640707374, |
| 0.6811921794182959, |
| 0.6620941327439891, |
| 0.6813795205502813, |
| 0.6771415229976728, |
| 0.6742408721997923, |
| 0.6795750853400371, |
| 0.6831444888841554, |
| 0.6755917356823575, |
| 0.6808625400187305, |
| 0.6705215235500008, |
| 0.680690040457493, |
| 0.6752320367068824, |
| 0.6735285800798977, |
| 0.6806255141138596, |
| 0.6628411116670594, |
| 0.675245408630261, |
| 0.6778606170713809, |
| 0.6768520456391283, |
| 0.6776615895642155, |
| 0.6776790947407052, |
| 0.682563300169226, |
| 0.6691324560440673, |
| 0.6797883846289277, |
| 0.6732365119317659, |
| 0.680976849363934, |
| 0.6827017269743091, |
| 0.6772066590023779, |
| 0.6790109663495544, |
| 0.6783613724059809, |
| 0.6814545601308026, |
| 0.6826656465839148, |
| 0.6724899185905656, |
| 0.6824855796538799, |
| 0.679255835497859, |
| 0.6820519215071593, |
| 0.6725877642887202, |
| 0.681310677736774, |
| 0.6749666056164261, |
| 0.6829154341646166, |
| 0.6785645834177397, |
| 0.6724107247374971, |
| 0.6787078765357873, |
| 0.6813155443019744, |
| 0.6783663389175645, |
| 0.6794410027683542, |
| 0.6811577287809432, |
| 0.6723444705874555, |
| 0.6822896059709571, |
| 0.6803291523195727, |
| 0.684184051428224, |
| 0.6753748922462492, |
| 0.6782667720595945, |
| 0.6825192884668114, |
| 0.6746239126862653, |
| 0.683976991844308, |
| 0.6810613351214058, |
| 0.671687867801229, |
| 0.6745271562766002, |
| 0.6802042146362609, |
| 0.6756136720368631, |
| 0.672428903178886, |
| 0.6841913328530301, |
| 0.6638967147921249, |
| 0.6830389051799071, |
| 0.6828349741994519, |
| 0.6800244803562842, |
| 0.6816816724878212, |
| 0.678044625695146, |
| 0.6764047412919846, |
| 0.6820901616099474, |
| 0.6836814052206533, |
| 0.6795819652494268, |
| 0.6837749323373112, |
| 0.6709100196330765, |
| 0.6826372234972515, |
| 0.6822998591940884, |
| 0.6790288178283997, |
| 0.6722634532932379, |
| 0.6818777075389242, |
| 0.6798884547653081, |
| 0.6820363702138051, |
| 0.6831417774593491, |
| 0.6820163105668213, |
| 0.6630516499128088, |
| 0.6804211048552599, |
| 0.6830116047545307, |
| 0.6833007313903873, |
| 0.6793399313499965, |
| 0.6821756359394646, |
| 0.6840367528690992, |
| 0.681217765439166, |
| 0.6821639434918165, |
| 0.6827068331851368, |
| 0.6825879847622679, |
| 0.6811414780079172, |
| 0.6844884051915957, |
| 0.6860578371798203, |
| 0.683622218171975, |
| 0.6819658510839237, |
| 0.6799678132288591, |
| 0.6768769680436345, |
| 0.6814320660012809, |
| 0.68152587734307, |
| 0.6820148918494563, |
| 0.678748681456047, |
| 0.6833578383342339, |
| 0.6826164414111815, |
| 0.6831666416361438, |
| 0.6809131639869523, |
| 0.6810139353882003, |
| 0.6809771450046068, |
| 0.6827252222163048, |
| 0.6826676883060716, |
| 0.6822462451316093, |
| 0.6803944791164439, |
| 0.6835623717511015, |
| 0.6781536360469798, |
| 0.6808629630396099, |
| 0.6815549353743797, |
| 0.6825396461700192, |
| 0.6797462210040013, |
| 0.6806181874359273, |
| 0.6793457945287648, |
| 0.6775982950895241, |
| 0.6815154171211147, |
| 0.6838794556631451, |
| 0.6829564695939605, |
| 0.6792202544147978, |
| 0.6858897766116083, |
| 0.6694902215187208, |
| 0.6795237785925808, |
| 0.6799640166061635, |
| 0.6838188293444668, |
| 0.6810571795591764, |
| 0.6803536780785453, |
| 0.6801708950018659, |
| 0.6803402353605885, |
| 0.6816650632253841, |
| 0.6804669248189815, |
| 0.6823605451635966, |
| 0.6811615641521395, |
| 0.6758316985079236, |
| 0.6838856401789689, |
| 0.6813626055924838, |
| 0.685155764558847, |
| 0.6793502699864317, |
| 0.679080415981609, |
| 0.6776282223036734, |
| 0.6804566164984586, |
| 0.6030345717773276, |
| 0.6810456863853989, |
| 0.6783593501603943, |
| 0.6770619291240505, |
| 0.6809013083553278, |
| 0.6755766643155157, |
| 0.6803153216341473, |
| 0.6763311923047204, |
| 0.6827932595709942, |
| 0.6811728881333478, |
| 0.6842730386834591, |
| 0.680769415718831, |
| 0.6839403682961711, |
| 0.685046034561824, |
| 0.6805960427693222, |
| 0.6801169429802808, |
| 0.6796910818663217, |
| 0.6783828308003721, |
| 0.6786571240376904, |
| 0.6686324869200642, |
| 0.6806826216604666, |
| 0.6805360335256584, |
| 0.6815208015016971, |
| 0.684265335367787, |
| 0.6773871123575494, |
| 0.6811128248328514, |
| 0.6808464836433752, |
| 0.6809919907881274, |
| 0.6770768713812766, |
| 0.681491236514385, |
| 0.6839469625339994, |
| 0.679863129710481, |
| 0.675489968600832, |
| 0.6794021166273975, |
| 0.67776547325625, |
| 0.6757947028678297, |
| 0.6739740373025249, |
| 0.6827691847259482, |
| 0.6757745627146567, |
| 0.6817648735304515, |
| 0.6818972489588828, |
| 0.6759166099384015, |
| 0.6777683825114457, |
| 0.6808839476038742, |
| 0.681441112769105, |
| 0.6800760962053523, |
| 0.6768589951700272, |
| 0.6800045358780894, |
| 0.6800512985886501, |
| 0.6795018672651487, |
| 0.6825814850670362, |
| 0.6842995086406227, |
| 0.6763100455384632, |
| 0.6833961714698241, |
| 0.6838265414733944, |
| 0.6775866231060363, |
| 0.6814309292835349, |
| 0.6817262773743792, |
| 0.6808338117006266, |
| 0.6793454860859391, |
| 0.6825992729509941, |
| 0.6801067217491191, |
| 0.6789030966377865, |
| 0.6815504388855435, |
| 0.6773369362229897, |
| 0.6725868765890199, |
| 0.6776956763714218, |
| 0.6791173851538668, |
| 0.677526079008403, |
| 0.6805746623492381, |
| 0.6748883773225212, |
| 0.6822224761240241, |
| 0.6798602893724345, |
| 0.6807589366370757, |
| 0.6737921763916257, |
| 0.6814810758435738, |
| 0.6771073166174737, |
| 0.6806338511533117, |
| 0.6788410987158102, |
| 0.6773037887062339, |
| 0.6798056988067697, |
| 0.6795945740520115, |
| 0.6795001109544002, |
| 0.6762333732368321, |
| 0.6741340430793217, |
| 0.6757554900097736, |
| 0.6789496711214812, |
| 0.6762223416435177, |
| 0.6813097410291769, |
| 0.6759717556039714, |
| 0.6796497386494114, |
| 0.6791206275700954, |
| 0.6785740538385719, |
| 0.6815093582522649, |
| 0.6817997139907154, |
| 0.678703085111003, |
| 0.6802793434145977, |
| 0.6784089250138985, |
| 0.6793726287152825, |
| 0.679194246074265, |
| 0.6761570055102646, |
| 0.6807067424923217, |
| 0.6788017351969445, |
| 0.6778287253540669, |
| 0.6778106168628862, |
| 0.6814486237844025, |
| 0.6817889764457962, |
| 0.6772038304967695, |
| 0.6617642139444717, |
| 0.6790414765368628, |
| 0.6758299006323317, |
| 0.6749391150766462, |
| 0.681593719450978, |
| 0.6814953153927754, |
| 0.6801890725025679, |
| 0.682063984993556, |
| 0.6751817536912345, |
| 0.6792818212238317, |
| 0.6777363249193287, |
| 0.6812952336783462, |
| 0.681352567887196, |
| 0.6733720292841097, |
| 0.6713007124692875, |
| 0.6731761941976457, |
| 0.6799078744693033, |
| 0.6810542695978122, |
| 0.6784705692498392, |
| 0.6787711828560666, |
| 0.6786722349879536, |
| 0.6764959817648929, |
| 0.6759950354987957, |
| 0.6768984533154315, |
| 0.680364510869681, |
| 0.6800546773154066, |
| 0.6805126703950471, |
| 0.678825531876404, |
| 0.6797565136993478, |
| 0.6685078257567602, |
| 0.674190932873484, |
| 0.6737498167006798, |
| 0.6812423436779977, |
| 0.6774328029665635, |
| 0.671876034584262, |
| 0.6821303569251619, |
| 0.6746713507545454, |
| 0.6802979320914591, |
| 0.679858783314279, |
| 0.6795778807497612 |
| ], |
| "val_metric": "pearson_delta", |
| "test_trace": null, |
| "val_alt_trace": null, |
| "val_alt_metric": "energy", |
| "early_stopped": true, |
| "stop_step": 432000, |
| "ceiling": 800000, |
| "undertrained": false, |
| "ema_decay": null, |
| "ema_val_trace": null, |
| "ema_test_trace": null, |
| "ema_final_test": null, |
| "ema_best_step": null, |
| "genfrontier_selected": "best_val", |
| "genfrontier_val": 0.6860578371798203, |
| "swa_frac": null, |
| "swa_tail_n": 0 |
| } |
| }, |
| "protocol": { |
| "mode": "production", |
| "family": "cell", |
| "select_metric": "pearson_delta", |
| "val_metric": "pearson_delta", |
| "ceiling": 800000, |
| "eval_every": 1000, |
| "val_frac": 0.15, |
| "val_mode": "transductive", |
| "early_stop_patience": 200, |
| "early_stop_min_steps": 120000, |
| "arms": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 232000, |
| "early_stopped": true, |
| "stop_step": 432000, |
| "ceiling": 800000, |
| "undertrained": false |
| } |
| }, |
| "undertrained": false, |
| "trained_to_full": true, |
| "canonical": "select_metric=pearson_delta val_frac=0.15 eval_every=1000 early_stop_patience=200 early_stop_min_delta=0.0001 early_stop_ema=0.3 early_stop_min_steps=120000 ceiling=800000 (backstop; early-stop fires first, but never before min_steps)" |
| }, |
| "n_toml_test": 735, |
| "n_split_test": 735, |
| "n_split_train": 348, |
| "n_eval_perts": 70, |
| "n_real_train_perts": 347, |
| "energy": { |
| "distilled_plus_wkdf_ccc": { |
| "n_perts": 70, |
| "median_energy_to_truth": 1.7807903289794922 |
| }, |
| "teacher": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.13015079498291016 |
| }, |
| "mean": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.2804889678955078 |
| } |
| } |
| } |