| { |
| "line": "C32", |
| "truth": "/mnt/ssd/scdistill_data/arc_data/tahoe_holdout_h5ad/c26.h5ad", |
| "plate_filter": "plate10", |
| "train_plates": "all", |
| "split_toml": "/mnt/ssd/scdistill_data/arc_state_se/st_hvg_tahoe/fewshot/generalization.toml", |
| "teacher_sim": "/mnt/ssd/scdistill_data/scdistill_fewshot/C32_simulated_fewshot.h5ad", |
| "fewshot_test_only": true, |
| "inductive": false, |
| "kd_space": "raw", |
| "null_teacher": "none", |
| "student_arch": "state_xs", |
| "steps": 800000, |
| "bs": 256, |
| "dim": 2000, |
| "seed": 2, |
| "n_drugs": 417, |
| "distill_mode": "energy", |
| "param_total_m": 3.211472, |
| "param_active_m": 3.211472, |
| "flow_pairing": "ot", |
| "flow_rollout": "onpolicy", |
| "flow_roll_steps": 4, |
| "flow_lambda": 0.1, |
| "flow_end_steps": 4, |
| "ode_steps": 10, |
| "ode_method": "euler", |
| "val_frac": 0.15, |
| "eval_every": 1000, |
| "val_policy": "strict", |
| "val_target": "own", |
| "val_metric": "pearson_delta", |
| "val_inductive_frac": 0.0, |
| "log_test_trace": false, |
| "n_inductive_val_perts": 0, |
| "val_on_state_val": false, |
| "val_mode": "transductive", |
| "n_state_val_perts": 0, |
| "early_stop_patience": 200, |
| "early_stop_min_delta": 0.0001, |
| "early_stop_ema": 0.3, |
| "early_stop_min_steps": 120000, |
| "distill_residual": false, |
| "shape_gamma": 0.0, |
| "shape_n_proj": 50, |
| "shape_var_gamma": 0.0, |
| "shape_in_whitened": false, |
| "shape_whiten_rank": 0, |
| "wkdf_gamma": 1.0, |
| "wkdf_ratio": 2.0, |
| "wkdf_eps": 1e-05, |
| "wkdf_shape_gamma": 0.0, |
| "wkdf_shape_mode": "centred", |
| "reward_gamma": 0.0, |
| "reward_scramble": false, |
| "feat_gamma": 0.0, |
| "featalign_scramble": false, |
| "huber_gamma": 0.0, |
| "huber_delta": 0.9, |
| "teacher_denoise_rank": 0, |
| "teacher_denoise_mode": "truncate", |
| "fusion_mode": "off", |
| "fusion_scramble": false, |
| "laplacian_gamma": 0.0, |
| "laplacian_k": 15, |
| "laplacian_normalized": 1, |
| "laplacian_scramble": false, |
| "whiten_rank": 0, |
| "whiten_alpha": 1.0, |
| "whiten_shrink": 0.05, |
| "whiten_gmin": 0.2, |
| "whiten_gmax": 3.0, |
| "whiten_source": "delta", |
| "mbar_l2_norm": null, |
| "convergence": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 156000, |
| "best_val": 0.6830619011143053, |
| "final_val": 0.6760955171544264, |
| "n_evals": 357, |
| "validated": true, |
| "val_trace": [ |
| 0.15456343961117422, |
| 0.4281085604667339, |
| 0.4392413204292914, |
| 0.47088476775368476, |
| 0.48326373640279896, |
| 0.48139013115778106, |
| 0.4779969670860661, |
| 0.5234845890743388, |
| 0.4950533466219192, |
| 0.5170452578775345, |
| 0.5349378709320448, |
| 0.5026621113202534, |
| 0.5555449195449917, |
| 0.5378690974975974, |
| 0.5609757740020425, |
| 0.5497532234251169, |
| 0.5909222393819948, |
| 0.5825558063665349, |
| 0.5728349850685397, |
| 0.5605879872295656, |
| 0.5766463663011633, |
| 0.5978895602818938, |
| 0.6159452611336323, |
| 0.5875066825343744, |
| 0.5929886043883182, |
| 0.5942937162684043, |
| 0.6050165964757284, |
| 0.6204908902548123, |
| 0.6061317467326574, |
| 0.6301408077925076, |
| 0.6283448395311974, |
| 0.6345239779428724, |
| 0.63466440172826, |
| 0.6330005934756868, |
| 0.6295146081586253, |
| 0.6347446616407052, |
| 0.6481062941523419, |
| 0.6411030703150025, |
| 0.6496594733717077, |
| 0.6484630566350096, |
| 0.6288039499211585, |
| 0.647820006322454, |
| 0.6472460525451932, |
| 0.6533811419799231, |
| 0.6486487941211452, |
| 0.6565327165431795, |
| 0.6556823711961857, |
| 0.6554125304405823, |
| 0.6426243593578183, |
| 0.6620084582885728, |
| 0.662153387075288, |
| 0.6601363948659374, |
| 0.6618962663254688, |
| 0.6528636775984231, |
| 0.6625424827088454, |
| 0.6650504428630853, |
| 0.6555482935840442, |
| 0.6632876712770279, |
| 0.6447005153382644, |
| 0.6542373348450269, |
| 0.6668038500416776, |
| 0.6647886776178046, |
| 0.6631280146843507, |
| 0.6628099336959943, |
| 0.6530500557131258, |
| 0.6661472216458689, |
| 0.671087137177235, |
| 0.6670094377987615, |
| 0.6632300713035773, |
| 0.6635579272094015, |
| 0.6636099949814317, |
| 0.6714751474421604, |
| 0.6666106409186495, |
| 0.6637851793675501, |
| 0.6714776456117326, |
| 0.6733717366844892, |
| 0.6701764247778682, |
| 0.6664055811119416, |
| 0.6686771667334362, |
| 0.672206916179415, |
| 0.6693502254859603, |
| 0.6678775308383125, |
| 0.6666075222167953, |
| 0.6710183957248405, |
| 0.6657621567943944, |
| 0.6736388067238381, |
| 0.6721428159390809, |
| 0.6742476213837408, |
| 0.6719343589795365, |
| 0.665496694295032, |
| 0.6686701723148868, |
| 0.6757253565091155, |
| 0.6710456822022618, |
| 0.6702923407331146, |
| 0.6696205590411798, |
| 0.6690053172350348, |
| 0.6749062258925772, |
| 0.6758379344352979, |
| 0.6580646920989296, |
| 0.6767462075646647, |
| 0.6751475089191084, |
| 0.6720153573183305, |
| 0.6713473242858353, |
| 0.6764308892462713, |
| 0.6760085201954745, |
| 0.6693478560729533, |
| 0.6565428073342078, |
| 0.667222597071357, |
| 0.6735679086596004, |
| 0.6733581647442449, |
| 0.6781554436734064, |
| 0.6711885740505198, |
| 0.6721497169634821, |
| 0.6687046665725812, |
| 0.6723595849587842, |
| 0.6709922867854184, |
| 0.6770000724467151, |
| 0.6706509140520042, |
| 0.6750087583332156, |
| 0.6752301568512581, |
| 0.6790960863787754, |
| 0.6717620864244892, |
| 0.6731006764158863, |
| 0.6781134952126103, |
| 0.6720760188231569, |
| 0.6758873839512117, |
| 0.6685206976794001, |
| 0.6743892216348351, |
| 0.6768120432726554, |
| 0.6776728332996426, |
| 0.6771371721484742, |
| 0.6806718426282241, |
| 0.6775355167425896, |
| 0.6774700056804757, |
| 0.6802031922478942, |
| 0.6710068734983873, |
| 0.6709384655947279, |
| 0.6742413113100989, |
| 0.678089657494325, |
| 0.6795852985876866, |
| 0.6759194415845935, |
| 0.6783569694768441, |
| 0.6774139142999491, |
| 0.6797623706385512, |
| 0.6788193668981473, |
| 0.6728167614520881, |
| 0.6749858307148514, |
| 0.668427279738382, |
| 0.6745135752856201, |
| 0.6787457196859901, |
| 0.6696112004437222, |
| 0.6789042799497422, |
| 0.6760283743841834, |
| 0.6789400498194164, |
| 0.6798634288793229, |
| 0.67547015304556, |
| 0.6830619011143053, |
| 0.6792667511664175, |
| 0.6728432460216908, |
| 0.6770428377887379, |
| 0.6785639519051374, |
| 0.6770281030234896, |
| 0.6714926856822268, |
| 0.6767658160211582, |
| 0.6769128764429618, |
| 0.6817369523649687, |
| 0.680045119668586, |
| 0.6742467923730852, |
| 0.6763714240302671, |
| 0.6792671051391388, |
| 0.6738465968324172, |
| 0.6670014161326999, |
| 0.6718397077498989, |
| 0.6743861971765629, |
| 0.6767511601852493, |
| 0.6770206900474097, |
| 0.6720550783512103, |
| 0.6747914984917002, |
| 0.6747779013850023, |
| 0.6743064930624951, |
| 0.6779656499759757, |
| 0.6735393623776387, |
| 0.6707621041627827, |
| 0.6752222706768951, |
| 0.672346980853749, |
| 0.6784615334433451, |
| 0.678681265996953, |
| 0.6643900116341188, |
| 0.6756379525426162, |
| 0.6782011043422163, |
| 0.6751738247936939, |
| 0.6747275965908608, |
| 0.6724069498650344, |
| 0.6684144868105446, |
| 0.6779767347808335, |
| 0.6757959588306296, |
| 0.6760859740843169, |
| 0.6766960346139379, |
| 0.67568086190032, |
| 0.6767070151139768, |
| 0.6777652625398234, |
| 0.6713437910340487, |
| 0.6734330230635205, |
| 0.6775431994787626, |
| 0.675560797146014, |
| 0.6775693819541312, |
| 0.6755313461463126, |
| 0.6770972662802679, |
| 0.6740332884398129, |
| 0.6766646528588757, |
| 0.6763214662690417, |
| 0.6700871047619181, |
| 0.681474674733021, |
| 0.6773118511385628, |
| 0.6779067535230779, |
| 0.6782181418104906, |
| 0.6775412317262092, |
| 0.6747330051037376, |
| 0.6739572942554363, |
| 0.6728835801340496, |
| 0.67325690073185, |
| 0.6738379905241656, |
| 0.6778362317373665, |
| 0.6717838580415185, |
| 0.6764502060794516, |
| 0.6769226661106983, |
| 0.6809681880928024, |
| 0.6790990853516701, |
| 0.6750175123778065, |
| 0.672261951612171, |
| 0.6671991384898068, |
| 0.6747528049099678, |
| 0.6780211512794687, |
| 0.6775977528898789, |
| 0.6766203765213511, |
| 0.6738462564644716, |
| 0.6770733390465776, |
| 0.6796059990843438, |
| 0.6789702570268774, |
| 0.6791528849586649, |
| 0.6777547664936119, |
| 0.6724481889692867, |
| 0.6716491854706006, |
| 0.6761517774490995, |
| 0.6767281438494817, |
| 0.6704105293931001, |
| 0.6769401245109804, |
| 0.6739968017084683, |
| 0.6730233806135802, |
| 0.6765788411333516, |
| 0.6730722950585108, |
| 0.671296999963816, |
| 0.6762257075884542, |
| 0.6760684407924237, |
| 0.6743767061225644, |
| 0.6758802111408104, |
| 0.6639988627012474, |
| 0.6769071048056948, |
| 0.6746446462573259, |
| 0.677832894773869, |
| 0.6703182814988704, |
| 0.6769979913936778, |
| 0.6769440357448613, |
| 0.6777980517447586, |
| 0.6753278825645885, |
| 0.6688037307993779, |
| 0.672259422791143, |
| 0.6722242289430667, |
| 0.6745278646496714, |
| 0.6772499308253608, |
| 0.6754372553441969, |
| 0.6760903144024247, |
| 0.6744115704394849, |
| 0.6731995972728464, |
| 0.6750056929299063, |
| 0.6752930982126216, |
| 0.6745873035739395, |
| 0.6733387585577623, |
| 0.6776066700017689, |
| 0.6713856737994489, |
| 0.674424338491221, |
| 0.677600285173678, |
| 0.6727706743315501, |
| 0.6739828457036158, |
| 0.6768392580007214, |
| 0.6735430390501141, |
| 0.6754377050935322, |
| 0.6769953922325639, |
| 0.6762931115974347, |
| 0.671312575422948, |
| 0.6754230781870926, |
| 0.670889883282705, |
| 0.6751520088454984, |
| 0.6712918492501586, |
| 0.6753885221499365, |
| 0.6777578349860883, |
| 0.6776721361007051, |
| 0.6751426315864482, |
| 0.6770192583297151, |
| 0.6725064645291127, |
| 0.6772983725673056, |
| 0.6749243935353479, |
| 0.6708647436095002, |
| 0.6743971799792744, |
| 0.6759943051949525, |
| 0.6783121527595543, |
| 0.6762193285628763, |
| 0.6748229300341505, |
| 0.6760539095499966, |
| 0.6740754139796945, |
| 0.6709440843924316, |
| 0.677396627749373, |
| 0.6767083649874349, |
| 0.6770377248080507, |
| 0.6773118002235582, |
| 0.67770820480377, |
| 0.673080174291492, |
| 0.6764195030956682, |
| 0.6764017386074644, |
| 0.6700848776616563, |
| 0.6776232822061615, |
| 0.6765910436190619, |
| 0.6766291459746525, |
| 0.6703065829030284, |
| 0.6698517116520513, |
| 0.6758173728672671, |
| 0.6779868531236724, |
| 0.6743023451703559, |
| 0.6764765677008949, |
| 0.6746871904579145, |
| 0.6726327753998487, |
| 0.6758198295049462, |
| 0.6710979105263043, |
| 0.6681537424168854, |
| 0.6781398734889973, |
| 0.6754146028226872, |
| 0.6753987448050207, |
| 0.6745896525608331, |
| 0.6777784758360504, |
| 0.6610906757936821, |
| 0.6731998801139077, |
| 0.6744358244803965, |
| 0.6729193150907743, |
| 0.6740816717843713, |
| 0.6691894168875423, |
| 0.6768305953822218, |
| 0.6747943863668873, |
| 0.672695018973572, |
| 0.6700857139470189, |
| 0.6754836119485421, |
| 0.6729498810754587, |
| 0.6734688013844762, |
| 0.6745134636654194, |
| 0.6723006714233691, |
| 0.673463680517501, |
| 0.6716613536026314, |
| 0.6760955171544264 |
| ], |
| "val_metric": "pearson_delta", |
| "test_trace": null, |
| "val_alt_trace": null, |
| "val_alt_metric": "energy", |
| "early_stopped": true, |
| "stop_step": 356000, |
| "ceiling": 800000, |
| "undertrained": false, |
| "ema_decay": null, |
| "ema_val_trace": null, |
| "ema_test_trace": null, |
| "ema_final_test": null, |
| "ema_best_step": null, |
| "genfrontier_selected": "best_val", |
| "genfrontier_val": 0.6830619011143053, |
| "swa_frac": null, |
| "swa_tail_n": 0 |
| } |
| }, |
| "protocol": { |
| "mode": "production", |
| "family": "cell", |
| "select_metric": "pearson_delta", |
| "val_metric": "pearson_delta", |
| "ceiling": 800000, |
| "eval_every": 1000, |
| "val_frac": 0.15, |
| "val_mode": "transductive", |
| "early_stop_patience": 200, |
| "early_stop_min_steps": 120000, |
| "arms": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 156000, |
| "early_stopped": true, |
| "stop_step": 356000, |
| "ceiling": 800000, |
| "undertrained": false |
| } |
| }, |
| "undertrained": false, |
| "trained_to_full": true, |
| "canonical": "select_metric=pearson_delta val_frac=0.15 eval_every=1000 early_stop_patience=200 early_stop_min_delta=0.0001 early_stop_ema=0.3 early_stop_min_steps=120000 ceiling=800000 (backstop; early-stop fires first, but never before min_steps)" |
| }, |
| "n_toml_test": 735, |
| "n_split_test": 735, |
| "n_split_train": 348, |
| "n_eval_perts": 70, |
| "n_real_train_perts": 347, |
| "energy": { |
| "distilled_plus_wkdf_ccc": { |
| "n_perts": 70, |
| "median_energy_to_truth": 1.9389524459838867 |
| }, |
| "teacher": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.13015079498291016 |
| }, |
| "mean": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.29996395111083984 |
| } |
| } |
| } |