| { |
| "line": "C32", |
| "truth": "/mnt/ssd/scdistill_data/arc_data/tahoe_holdout_h5ad/c26.h5ad", |
| "plate_filter": "plate10", |
| "train_plates": "all", |
| "split_toml": "/mnt/ssd/scdistill_data/arc_state_se/st_hvg_tahoe/fewshot/generalization.toml", |
| "teacher_sim": "/mnt/ssd/scdistill_data/scdistill_fewshot/C32_simulated_fewshot.h5ad", |
| "fewshot_test_only": true, |
| "inductive": false, |
| "kd_space": "raw", |
| "null_teacher": "none", |
| "student_arch": "state_xs", |
| "steps": 800000, |
| "bs": 256, |
| "dim": 2000, |
| "seed": 0, |
| "n_drugs": 417, |
| "distill_mode": "energy", |
| "param_total_m": 3.211472, |
| "param_active_m": 3.211472, |
| "flow_pairing": "ot", |
| "flow_rollout": "onpolicy", |
| "flow_roll_steps": 4, |
| "flow_lambda": 0.1, |
| "flow_end_steps": 4, |
| "ode_steps": 10, |
| "ode_method": "euler", |
| "val_frac": 0.15, |
| "eval_every": 1000, |
| "val_policy": "strict", |
| "val_target": "own", |
| "val_metric": "pearson_delta", |
| "val_inductive_frac": 0.0, |
| "log_test_trace": false, |
| "n_inductive_val_perts": 0, |
| "val_on_state_val": false, |
| "val_mode": "transductive", |
| "n_state_val_perts": 0, |
| "early_stop_patience": 200, |
| "early_stop_min_delta": 0.0001, |
| "early_stop_ema": 0.3, |
| "early_stop_min_steps": 120000, |
| "distill_residual": false, |
| "shape_gamma": 0.0, |
| "shape_n_proj": 50, |
| "shape_var_gamma": 0.0, |
| "shape_in_whitened": false, |
| "shape_whiten_rank": 0, |
| "wkdf_gamma": 1.0, |
| "wkdf_ratio": 2.0, |
| "wkdf_eps": 1e-05, |
| "wkdf_shape_gamma": 0.0, |
| "wkdf_shape_mode": "centred", |
| "reward_gamma": 0.0, |
| "reward_scramble": false, |
| "feat_gamma": 0.0, |
| "featalign_scramble": false, |
| "huber_gamma": 0.0, |
| "huber_delta": 0.9, |
| "teacher_denoise_rank": 0, |
| "teacher_denoise_mode": "truncate", |
| "fusion_mode": "off", |
| "fusion_scramble": false, |
| "laplacian_gamma": 0.0, |
| "laplacian_k": 15, |
| "laplacian_normalized": 1, |
| "laplacian_scramble": false, |
| "whiten_rank": 0, |
| "whiten_alpha": 1.0, |
| "whiten_shrink": 0.05, |
| "whiten_gmin": 0.2, |
| "whiten_gmax": 3.0, |
| "whiten_source": "delta", |
| "mbar_l2_norm": null, |
| "convergence": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 228000, |
| "best_val": 0.6867755717735466, |
| "final_val": 0.6727667276463446, |
| "n_evals": 423, |
| "validated": true, |
| "val_trace": [ |
| 0.14899125238189456, |
| 0.43861951810026684, |
| 0.42913609283542703, |
| 0.4552731198709707, |
| 0.45646102142446204, |
| 0.46306755020543167, |
| 0.5338080952633116, |
| 0.5312847297229524, |
| 0.5258035374686202, |
| 0.4899855986001081, |
| 0.5534570366458236, |
| 0.5628480691654172, |
| 0.5531610865222295, |
| 0.5731999389311572, |
| 0.5606979282971752, |
| 0.5667163295467399, |
| 0.5721236518856845, |
| 0.5842686972468606, |
| 0.602914041862294, |
| 0.5900092806211461, |
| 0.6013251365110798, |
| 0.6083039399036375, |
| 0.6163666213571847, |
| 0.6065531031073392, |
| 0.6285421745494271, |
| 0.6270208112006643, |
| 0.6306732533913214, |
| 0.6341260110471405, |
| 0.6342986128059693, |
| 0.6372323092603445, |
| 0.6387715787095025, |
| 0.62936414185886, |
| 0.6339426065308175, |
| 0.6426560643395991, |
| 0.6376391157254587, |
| 0.645096834152399, |
| 0.6571137901857486, |
| 0.6524171311538768, |
| 0.65384185489148, |
| 0.6594246468570782, |
| 0.6630402952660739, |
| 0.6584075323165813, |
| 0.6629229395144542, |
| 0.6646784952623938, |
| 0.6566005787344742, |
| 0.6717964835867611, |
| 0.6703955814187035, |
| 0.6507490314394662, |
| 0.6636353104157933, |
| 0.6645352190662737, |
| 0.6690411888445857, |
| 0.6649544719588013, |
| 0.669468486194927, |
| 0.6666173985011155, |
| 0.6646267547717224, |
| 0.6724642617599642, |
| 0.6458264516461207, |
| 0.6682229157455073, |
| 0.6668454266423296, |
| 0.6570211891701649, |
| 0.6722220701485602, |
| 0.6684837701858733, |
| 0.6803700799016346, |
| 0.6732218961341969, |
| 0.666603113785604, |
| 0.6704476329120467, |
| 0.6729203938857289, |
| 0.6670688841942944, |
| 0.6690750775802761, |
| 0.676343005997045, |
| 0.6749665854825249, |
| 0.6749431595070048, |
| 0.6818760842049476, |
| 0.6504294815873044, |
| 0.6773061671324015, |
| 0.6811136048268486, |
| 0.6711001263036216, |
| 0.6789263914297788, |
| 0.6795147358720482, |
| 0.6754301261702805, |
| 0.6735584520830786, |
| 0.6767741870203404, |
| 0.6734776004761606, |
| 0.6741952870629881, |
| 0.6798330140513762, |
| 0.6768644366252116, |
| 0.6781755106042225, |
| 0.6804081383880017, |
| 0.6679237676327987, |
| 0.6661547102793913, |
| 0.6776820696517384, |
| 0.676593383797852, |
| 0.6794654406383223, |
| 0.6769275649437343, |
| 0.6746443159515685, |
| 0.676903025246743, |
| 0.6823884075004323, |
| 0.6812460545432933, |
| 0.6801442775939943, |
| 0.6814089834084268, |
| 0.6841749741168904, |
| 0.6783338902271124, |
| 0.6858993623871192, |
| 0.6808351692877715, |
| 0.6792760534575067, |
| 0.6792372686949534, |
| 0.6815952652585463, |
| 0.6832250888312412, |
| 0.678815073070839, |
| 0.6815736630372209, |
| 0.6800742243662639, |
| 0.6761974755744793, |
| 0.6845270774678773, |
| 0.6796754133326016, |
| 0.6796813094029818, |
| 0.6781704308331215, |
| 0.6851913119506741, |
| 0.685596557611319, |
| 0.6843032379902423, |
| 0.6733443486228161, |
| 0.6786135930328042, |
| 0.683935191082677, |
| 0.6810126439401321, |
| 0.6822011951979434, |
| 0.6852932988177185, |
| 0.6785713550385001, |
| 0.685935160185218, |
| 0.6759658362940267, |
| 0.6730666180897401, |
| 0.6830232424352188, |
| 0.6853299356707956, |
| 0.6816666490178447, |
| 0.6851230335608666, |
| 0.6766409243708768, |
| 0.681347091882566, |
| 0.6814961794809031, |
| 0.6829745627274049, |
| 0.6822173673248264, |
| 0.6824235979643012, |
| 0.679822440790681, |
| 0.6723275233486962, |
| 0.6832403722323496, |
| 0.6839731147034923, |
| 0.6834189155615447, |
| 0.6832728306303468, |
| 0.665074056288018, |
| 0.6840031997452637, |
| 0.6857712863546256, |
| 0.6769838619826092, |
| 0.6818100014564238, |
| 0.6729270495911205, |
| 0.6788855471312613, |
| 0.6832889583643816, |
| 0.684417208227525, |
| 0.6847992557575902, |
| 0.6798400405081003, |
| 0.682234044777556, |
| 0.6819091521686085, |
| 0.6834281628487263, |
| 0.6824375459738418, |
| 0.684385805328591, |
| 0.6850500283215828, |
| 0.685472285785846, |
| 0.684715540706176, |
| 0.6791329240487763, |
| 0.6829195562841354, |
| 0.6831783827538942, |
| 0.6818503321354955, |
| 0.6845395096120457, |
| 0.6796065457519158, |
| 0.6837103983392423, |
| 0.6829669367167839, |
| 0.6822512252923876, |
| 0.6761417381590885, |
| 0.6851711448046014, |
| 0.6814834683170756, |
| 0.6812600463179488, |
| 0.6829762133072129, |
| 0.6832859653591786, |
| 0.6802130685325065, |
| 0.6827865554911459, |
| 0.6748271115491089, |
| 0.6745968506071269, |
| 0.6824802366640113, |
| 0.6849478524628945, |
| 0.6841244513804355, |
| 0.680963752657999, |
| 0.6784421803186859, |
| 0.6850521340180727, |
| 0.6798906340255465, |
| 0.6835609025456847, |
| 0.6849018647310657, |
| 0.6756458849071424, |
| 0.6811223143347379, |
| 0.6832184374168768, |
| 0.6776257235696863, |
| 0.678875810509345, |
| 0.6837251505084475, |
| 0.6774037482759824, |
| 0.6824423786497043, |
| 0.683963093335516, |
| 0.6806082554253227, |
| 0.6801797364238106, |
| 0.6816782246284131, |
| 0.6819318623200907, |
| 0.6814353003640601, |
| 0.6849467094723123, |
| 0.6804688004935822, |
| 0.6825279217768552, |
| 0.6795215166422108, |
| 0.6828244222122999, |
| 0.6819186235476568, |
| 0.6772309009135747, |
| 0.6802711824522184, |
| 0.6832629572651775, |
| 0.6833464690581013, |
| 0.6846749148148029, |
| 0.6850608712101541, |
| 0.6800334614527965, |
| 0.6768396209751378, |
| 0.6831422266515973, |
| 0.685156630220395, |
| 0.6862794270748982, |
| 0.6846220840125818, |
| 0.6826973260827028, |
| 0.6824913610082594, |
| 0.6834330790887017, |
| 0.6818652035903714, |
| 0.6867755717735466, |
| 0.6816722992451161, |
| 0.6824382977270113, |
| 0.6844225467325201, |
| 0.6841098741147721, |
| 0.6833029321143768, |
| 0.6859345787381189, |
| 0.6845978254426007, |
| 0.6808978871979969, |
| 0.6839994773257096, |
| 0.6838354516172847, |
| 0.6811485551618017, |
| 0.6832106155452289, |
| 0.6859280688607512, |
| 0.6817467684440652, |
| 0.6845393571170884, |
| 0.6850197374961072, |
| 0.6791027174762866, |
| 0.6833696717756766, |
| 0.6838846235259317, |
| 0.6813975099171353, |
| 0.6819345236206128, |
| 0.6835221277728903, |
| 0.6834359581307933, |
| 0.6838169750670018, |
| 0.6837118149279278, |
| 0.6846163195984951, |
| 0.68302270180856, |
| 0.6820955515834742, |
| 0.6831429947318957, |
| 0.6835476259866993, |
| 0.6794565119075009, |
| 0.6821013995470308, |
| 0.6867638539491823, |
| 0.6830754219705168, |
| 0.680370041483327, |
| 0.6856458528614492, |
| 0.679677311283049, |
| 0.6818715119649452, |
| 0.6826511681684881, |
| 0.684569549299175, |
| 0.6819722224993212, |
| 0.6822355637495634, |
| 0.6805880580567312, |
| 0.6795472736828685, |
| 0.6859296191233928, |
| 0.6833484798100805, |
| 0.6813002403206156, |
| 0.6809750347292203, |
| 0.6824889141013059, |
| 0.6848530200851664, |
| 0.6856931167133561, |
| 0.6805576180218867, |
| 0.6797162278847054, |
| 0.6808062833220534, |
| 0.682135373625553, |
| 0.683773264371216, |
| 0.6758756207511881, |
| 0.6838448446532135, |
| 0.6787235578845656, |
| 0.6774940128193769, |
| 0.6822430718064741, |
| 0.6748567273617918, |
| 0.681891796935958, |
| 0.6781860716836191, |
| 0.6844935682170593, |
| 0.6786831447390892, |
| 0.6840041471713119, |
| 0.6830023363487557, |
| 0.6839849648573935, |
| 0.6828809169399399, |
| 0.6819674359418079, |
| 0.6811209163484904, |
| 0.6832942871500731, |
| 0.6801318565710166, |
| 0.6745409595094777, |
| 0.6798989174083502, |
| 0.6808924463735805, |
| 0.6791187692215883, |
| 0.6821513740556802, |
| 0.6827841332905655, |
| 0.6792678086149118, |
| 0.6818747435579714, |
| 0.6831342248019265, |
| 0.6811456578579816, |
| 0.6776017507465921, |
| 0.6839469750772784, |
| 0.6835173787442174, |
| 0.6824717467099921, |
| 0.6804868813009299, |
| 0.682576701956175, |
| 0.680694900299676, |
| 0.6812389573430184, |
| 0.6798338556177626, |
| 0.6831061460967955, |
| 0.6789476391599587, |
| 0.681581936430693, |
| 0.6846683553795236, |
| 0.6819951027797148, |
| 0.6788765398751312, |
| 0.6824148512254372, |
| 0.6842790557928194, |
| 0.6803921119167162, |
| 0.6806880506216797, |
| 0.6821108887655403, |
| 0.6798932393045135, |
| 0.680879775828635, |
| 0.6791056045895494, |
| 0.6855028807280339, |
| 0.6778856995417798, |
| 0.6744220455680768, |
| 0.6836614443984821, |
| 0.6826742159805333, |
| 0.683659860012215, |
| 0.6809213827381573, |
| 0.6795575584106914, |
| 0.6786166171629503, |
| 0.6810993251833025, |
| 0.6812756226318624, |
| 0.6754527927457257, |
| 0.6825292072570265, |
| 0.6792451041298261, |
| 0.6747557673398314, |
| 0.6769436804864041, |
| 0.6803628182342218, |
| 0.6789202366327028, |
| 0.6815991166569534, |
| 0.677133186376854, |
| 0.6831858630843038, |
| 0.6796304826108164, |
| 0.6816160111386996, |
| 0.6798349381496198, |
| 0.6822219295785581, |
| 0.6820958052470527, |
| 0.6785444279537226, |
| 0.6809057369616129, |
| 0.6775991659269408, |
| 0.6752717577073033, |
| 0.6802290603156169, |
| 0.6824489652206505, |
| 0.6792868214688449, |
| 0.6786685886975675, |
| 0.6766076423177186, |
| 0.6796818868426562, |
| 0.6803060379374254, |
| 0.6813945322486521, |
| 0.6770468074888307, |
| 0.6801210418083152, |
| 0.6808180261723837, |
| 0.6797171687339522, |
| 0.6840145471024657, |
| 0.6807636624213927, |
| 0.6817010697668435, |
| 0.68110043644609, |
| 0.676745728760981, |
| 0.6804138390496662, |
| 0.6803760073387796, |
| 0.6801228311527114, |
| 0.6829101983892445, |
| 0.6823152453859032, |
| 0.6791346402623382, |
| 0.6814388906118135, |
| 0.6818313703230633, |
| 0.6801134465212375, |
| 0.6766813549404165, |
| 0.6745826201476173, |
| 0.6778005276087855, |
| 0.6762642827907072, |
| 0.6773894847292379, |
| 0.6821644294974017, |
| 0.6844184560361404, |
| 0.6793280154941803, |
| 0.683708628761978, |
| 0.6751257441502306, |
| 0.6743833409827058, |
| 0.6763422776477993, |
| 0.6832301346096764, |
| 0.6825579100166044, |
| 0.6806244082881453, |
| 0.6720496302136294, |
| 0.6764317672236353, |
| 0.6804464175419571, |
| 0.6810453435624784, |
| 0.6810554655413161, |
| 0.6785807510469809, |
| 0.6790528789626611, |
| 0.6809107304791477, |
| 0.6790207005168751, |
| 0.6800589269515994, |
| 0.6804431560810176, |
| 0.680701880608598, |
| 0.6825650089801173, |
| 0.6800158986298404, |
| 0.6806159655540261, |
| 0.6727667276463446 |
| ], |
| "val_metric": "pearson_delta", |
| "test_trace": null, |
| "val_alt_trace": null, |
| "val_alt_metric": "energy", |
| "early_stopped": true, |
| "stop_step": 422000, |
| "ceiling": 800000, |
| "undertrained": false, |
| "ema_decay": null, |
| "ema_val_trace": null, |
| "ema_test_trace": null, |
| "ema_final_test": null, |
| "ema_best_step": null, |
| "genfrontier_selected": "best_val", |
| "genfrontier_val": 0.6867755717735466, |
| "swa_frac": null, |
| "swa_tail_n": 0 |
| } |
| }, |
| "protocol": { |
| "mode": "production", |
| "family": "cell", |
| "select_metric": "pearson_delta", |
| "val_metric": "pearson_delta", |
| "ceiling": 800000, |
| "eval_every": 1000, |
| "val_frac": 0.15, |
| "val_mode": "transductive", |
| "early_stop_patience": 200, |
| "early_stop_min_steps": 120000, |
| "arms": { |
| "distilled_plus_wkdf_ccc": { |
| "best_step": 228000, |
| "early_stopped": true, |
| "stop_step": 422000, |
| "ceiling": 800000, |
| "undertrained": false |
| } |
| }, |
| "undertrained": false, |
| "trained_to_full": true, |
| "canonical": "select_metric=pearson_delta val_frac=0.15 eval_every=1000 early_stop_patience=200 early_stop_min_delta=0.0001 early_stop_ema=0.3 early_stop_min_steps=120000 ceiling=800000 (backstop; early-stop fires first, but never before min_steps)" |
| }, |
| "n_toml_test": 735, |
| "n_split_test": 735, |
| "n_split_train": 348, |
| "n_eval_perts": 70, |
| "n_real_train_perts": 347, |
| "energy": { |
| "distilled_plus_wkdf_ccc": { |
| "n_perts": 70, |
| "median_energy_to_truth": 1.9712638854980469 |
| }, |
| "teacher": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.13015079498291016 |
| }, |
| "mean": { |
| "n_perts": 70, |
| "median_energy_to_truth": 0.2804889678955078 |
| } |
| } |
| } |