Upload runs/calib_fold/calib10_seed1/summary.json with huggingface_hub

runs/calib_fold/calib10_seed1/summary.json

@@ -0,0 +1,542 @@
+{
+  "line": "C32",
+  "truth": "/mnt/ssd/scdistill_data/arc_data/tahoe_holdout_h5ad/c26.h5ad",
+  "plate_filter": "plate10",
+  "train_plates": "all",
+  "split_toml": "/mnt/ssd/scdistill_data/arc_state_se/st_hvg_tahoe/fewshot/generalization.toml",
+  "teacher_sim": "/mnt/ssd/scdistill_data/scdistill_fewshot/C32_simulated_fewshot.h5ad",
+  "fewshot_test_only": true,
+  "inductive": false,
+  "kd_space": "raw",
+  "null_teacher": "none",
+  "student_arch": "state_xs",
+  "steps": 800000,
+  "bs": 256,
+  "dim": 2000,
+  "seed": 1,
+  "n_drugs": 417,
+  "distill_mode": "energy",
+  "param_total_m": 3.211472,
+  "param_active_m": 3.211472,
+  "flow_pairing": "ot",
+  "flow_rollout": "onpolicy",
+  "flow_roll_steps": 4,
+  "flow_lambda": 0.1,
+  "flow_end_steps": 4,
+  "ode_steps": 10,
+  "ode_method": "euler",
+  "val_frac": 0.15,
+  "eval_every": 1000,
+  "val_policy": "strict",
+  "val_target": "own",
+  "val_metric": "pearson_delta",
+  "val_inductive_frac": 0.0,
+  "log_test_trace": false,
+  "n_inductive_val_perts": 0,
+  "val_on_state_val": false,
+  "val_mode": "transductive",
+  "n_state_val_perts": 0,
+  "early_stop_patience": 200,
+  "early_stop_min_delta": 0.0001,
+  "early_stop_ema": 0.3,
+  "early_stop_min_steps": 120000,
+  "distill_residual": false,
+  "shape_gamma": 0.0,
+  "shape_n_proj": 50,
+  "shape_var_gamma": 0.0,
+  "shape_in_whitened": false,
+  "shape_whiten_rank": 0,
+  "wkdf_gamma": 1.0,
+  "wkdf_ratio": 2.0,
+  "wkdf_eps": 1e-05,
+  "wkdf_shape_gamma": 0.0,
+  "wkdf_shape_mode": "centred",
+  "reward_gamma": 0.0,
+  "reward_scramble": false,
+  "feat_gamma": 0.0,
+  "featalign_scramble": false,
+  "huber_gamma": 0.0,
+  "huber_delta": 0.9,
+  "teacher_denoise_rank": 0,
+  "teacher_denoise_mode": "truncate",
+  "fusion_mode": "off",
+  "fusion_scramble": false,
+  "laplacian_gamma": 0.0,
+  "laplacian_k": 15,
+  "laplacian_normalized": 1,
+  "laplacian_scramble": false,
+  "whiten_rank": 0,
+  "whiten_alpha": 1.0,
+  "whiten_shrink": 0.05,
+  "whiten_gmin": 0.2,
+  "whiten_gmax": 3.0,
+  "whiten_source": "delta",
+  "mbar_l2_norm": null,
+  "convergence": {
+    "distilled_plus_wkdf": {
+      "best_step": 166000,
+      "best_val": 0.6758499541783918,
+      "final_val": 0.6634207951198245,
+      "n_evals": 396,
+      "validated": true,
+      "val_trace": [
+        0.14707248042501928,
+        0.40285240873261985,
+        0.430154947302409,
+        0.38934095167294536,
+        0.4748346774687788,
+        0.5215816309334436,
+        0.48849557051439874,
+        0.5192999837618434,
+        0.5416926688440815,
+        0.5305327560183016,
+        0.5439142033947794,
+        0.5285086268589199,
+        0.5756357764820419,
+        0.5572411495575365,
+        0.5551995197725952,
+        0.5496754588371425,
+        0.5345863586484223,
+        0.5929222427893234,
+        0.5948404494400801,
+        0.6049872048320962,
+        0.600473938806112,
+        0.5838931980472138,
+        0.5935244045369313,
+        0.6141821965882853,
+        0.6057081714394522,
+        0.6279859236320022,
+        0.6176740041127753,
+        0.6096229315917069,
+        0.6002474309454612,
+        0.6165973096567198,
+        0.6407602832525285,
+        0.6102592284226326,
+        0.6373498979902129,
+        0.648601343674984,
+        0.645495362717127,
+        0.646674089119909,
+        0.6377141570464171,
+        0.6544839528267042,
+        0.6416183674619945,
+        0.6477506574117522,
+        0.6328669226710302,
+        0.6467401364754641,
+        0.6522929888181893,
+        0.6427541052014535,
+        0.6596941851327726,
+        0.647871267276051,
+        0.6536265887988851,
+        0.6587535119951735,
+        0.6518858618421359,
+        0.6548339473382551,
+        0.6635956102153044,
+        0.6527235985113442,
+        0.6379263642586499,
+        0.6512419678956454,
+        0.6549813472769679,
+        0.6608653365245999,
+        0.650762711961951,
+        0.6604801132596069,
+        0.657000169342282,
+        0.6645106549319117,
+        0.6533903238400334,
+        0.6466630102760073,
+        0.6459832751136464,
+        0.658662870976664,
+        0.6602596903011962,
+        0.6668492062904593,
+        0.6566276209473976,
+        0.6574626520791631,
+        0.656959588058556,
+        0.6629154601011307,
+        0.657908599295732,
+        0.6687631708555596,
+        0.6496230235806737,
+        0.6630394464687432,
+        0.6724379419104345,
+        0.6517983863201573,
+        0.663589330787699,
+        0.6554280689583938,
+        0.6627671838151397,
+        0.666444195067744,
+        0.6663318213045374,
+        0.669948136652212,
+        0.6632148330659358,
+        0.6601196404368744,
+        0.6665535279106061,
+        0.6645959508391287,
+        0.6682336034810944,
+        0.6601527851408425,
+        0.6708933565981975,
+        0.669023401426285,
+        0.6600285296944312,
+        0.6667645280870961,
+        0.6660480566368122,
+        0.6689460960540375,
+        0.6716050770742957,
+        0.6682223301348769,
+        0.6645147935687842,
+        0.6487375473157904,
+        0.6659192363326999,
+        0.6702164307385219,
+        0.6581283349698733,
+        0.6665153935157333,
+        0.6734520148554713,
+        0.6730946565666576,
+        0.6675391805126861,
+        0.6667909760405597,
+        0.6698321833581641,
+        0.6539313045288349,
+        0.6592529397015674,
+        0.6647740200147382,
+        0.6725979913230136,
+        0.6723035121935257,
+        0.6607337110274846,
+        0.6684921615628822,
+        0.6663688240730524,
+        0.6696153703300175,
+        0.6724073711835945,
+        0.672351165801489,
+        0.6695453939516809,
+        0.6689496467214034,
+        0.6620219346896331,
+        0.6713930855116481,
+        0.6659441739836099,
+        0.6710971978181437,
+        0.6668084870866767,
+        0.6665003350525223,
+        0.6686296814713985,
+        0.6698368841858943,
+        0.6717610272529667,
+        0.6716530221870846,
+        0.6741002744116251,
+        0.6709819780519811,
+        0.6720516308056147,
+        0.6594000114920405,
+        0.659399717951997,
+        0.6740516373383981,
+        0.6639228162368921,
+        0.6697955173636668,
+        0.6676107139262387,
+        0.6689925266528706,
+        0.6702312262223972,
+        0.6707010712900253,
+        0.669252835348567,
+        0.6671213941725105,
+        0.6716079616760076,
+        0.6681437672147054,
+        0.671994142864504,
+        0.6688825319010323,
+        0.6734586901499252,
+        0.6572158533934583,
+        0.6741846553090062,
+        0.6638183536999099,
+        0.6713037504676778,
+        0.6641615628752614,
+        0.6701197159088395,
+        0.6699777309851072,
+        0.6602633569913983,
+        0.6740979901995873,
+        0.6688475724926694,
+        0.6715273457378783,
+        0.6739120569239125,
+        0.6747101930516208,
+        0.671662369610306,
+        0.6730184898891662,
+        0.6675695318073769,
+        0.6725210259555208,
+        0.6758499541783918,
+        0.6715445901975091,
+        0.6686729400415605,
+        0.6692842677452729,
+        0.6696937325751394,
+        0.6680736431281559,
+        0.6740779759050401,
+        0.670173621017795,
+        0.669265892504461,
+        0.6756741141522358,
+        0.6668164630464862,
+        0.6708567840022744,
+        0.6660517392525384,
+        0.6709743756102202,
+        0.6718109694229002,
+        0.6721935586368893,
+        0.6698308612176287,
+        0.6721255438454291,
+        0.6652220212459169,
+        0.6691945523016415,
+        0.672982924567797,
+        0.6692545209182688,
+        0.6719387748102787,
+        0.6686264115162479,
+        0.6702992223673332,
+        0.6684407778890047,
+        0.6660994088110849,
+        0.6733588624542128,
+        0.6743629254124173,
+        0.6752726845973303,
+        0.6687014485555948,
+        0.6703000086709131,
+        0.6700326416670276,
+        0.6726773456242263,
+        0.6732673344911533,
+        0.6668735644479546,
+        0.6725698385059484,
+        0.6683781924240407,
+        0.6675852896026091,
+        0.6715326829971809,
+        0.6663288872110004,
+        0.6734170802691934,
+        0.6712806771926627,
+        0.6718846098629278,
+        0.6693115291482628,
+        0.6706654324858076,
+        0.6718936227476888,
+        0.6683594492199997,
+        0.6714688069583846,
+        0.6714443569731539,
+        0.6724170502903801,
+        0.6680814579287685,
+        0.6726460798964238,
+        0.668209652397923,
+        0.6721550348304611,
+        0.671883941223,
+        0.6726398309770596,
+        0.6733175655675582,
+        0.6681090047075446,
+        0.6682488313947803,
+        0.6725761520159237,
+        0.673740637114929,
+        0.664395448122511,
+        0.6708126208948707,
+        0.6695789903172666,
+        0.6649444042804596,
+        0.6729689982217762,
+        0.6684479025265221,
+        0.6699102564273877,
+        0.6665636701241541,
+        0.6694404881033696,
+        0.6713091647328281,
+        0.6670908424228567,
+        0.6732150982899164,
+        0.6729331548046478,
+        0.6708137561620594,
+        0.6624208281317955,
+        0.6690359370950019,
+        0.6720169690892527,
+        0.6705889636493482,
+        0.6639911874137381,
+        0.6715262745304288,
+        0.6658127861109131,
+        0.6732681281153593,
+        0.6698423169842932,
+        0.6697023379059225,
+        0.6704859932814093,
+        0.6724654900139657,
+        0.67338669459653,
+        0.6705517649225994,
+        0.6704207655681595,
+        0.6714841433087942,
+        0.669348934305934,
+        0.6653646151464292,
+        0.6710432120544849,
+        0.6715101640259094,
+        0.669554694881778,
+        0.6703711165994765,
+        0.6615918624275811,
+        0.6704064848624083,
+        0.6708805749710941,
+        0.6708375001552835,
+        0.6711425322751979,
+        0.6690092776288039,
+        0.6699456945880918,
+        0.6738570158930138,
+        0.6708476218024947,
+        0.6711255009816787,
+        0.6694806513348035,
+        0.6639332326033003,
+        0.6654419026332605,
+        0.6555170176715862,
+        0.6639690642457372,
+        0.6701814310520323,
+        0.6630282377103911,
+        0.6706815236270469,
+        0.672118569738974,
+        0.6712349032460517,
+        0.6692809535111942,
+        0.6729731562808672,
+        0.6678504975824474,
+        0.667556382437962,
+        0.6665557949663095,
+        0.6639273071841526,
+        0.6666935339977433,
+        0.666059925395994,
+        0.669401473906335,
+        0.6691289220197439,
+        0.669526716821962,
+        0.6703209542533954,
+        0.6599042509521981,
+        0.6703403122088696,
+        0.6710655800199118,
+        0.6666349691021981,
+        0.673681233336905,
+        0.6688750369960781,
+        0.6696878644246315,
+        0.6672584780200576,
+        0.6708437061648809,
+        0.6667278021348736,
+        0.67127089926623,
+        0.6696733611227241,
+        0.6696051307595096,
+        0.6694747992631894,
+        0.671123128207234,
+        0.6671374970257612,
+        0.6651475295901884,
+        0.6718560525991389,
+        0.6700285379368672,
+        0.6689681834861161,
+        0.6719425737364408,
+        0.6683772746586244,
+        0.668411824620098,
+        0.6638684111305986,
+        0.6695092776486736,
+        0.669419170427469,
+        0.668005081735325,
+        0.6692171460110373,
+        0.667498344834759,
+        0.6694751591492738,
+        0.6639728889776291,
+        0.6693973440320578,
+        0.6695606388465447,
+        0.6682949336482789,
+        0.6717874919889769,
+        0.6699052016152193,
+        0.6687098955014321,
+        0.6678383417186388,
+        0.6641455162722854,
+        0.6629938151862977,
+        0.6667725192971851,
+        0.6699014494327923,
+        0.6631873272310337,
+        0.664851162310934,
+        0.6678273402967709,
+        0.6699226119111176,
+        0.6684898863962261,
+        0.6691915490014114,
+        0.6649280527375954,
+        0.6679532068499104,
+        0.6699523792506528,
+        0.6683636615471548,
+        0.6664973055906124,
+        0.6632219807889612,
+        0.6677326121560493,
+        0.6663389807084653,
+        0.6678408628055857,
+        0.6705707022309609,
+        0.669062000145114,
+        0.6682311721765712,
+        0.6663638826089339,
+        0.6686883067137849,
+        0.6688703763430344,
+        0.6636858948917018,
+        0.6558643119618136,
+        0.6694376416937492,
+        0.6672551505872185,
+        0.668053607736064,
+        0.6714053997856024,
+        0.667095893437756,
+        0.6680262878884953,
+        0.6691636359255853,
+        0.6672022150510138,
+        0.665210374012192,
+        0.6682249257668438,
+        0.6666587139136937,
+        0.666210864129927,
+        0.6659085186742703,
+        0.6638825080922073,
+        0.6664715807731935,
+        0.6670653974835207,
+        0.6680725677005569,
+        0.6619759287271576,
+        0.66768181402625,
+        0.6691910868881141,
+        0.6627713816362212,
+        0.6689494174655158,
+        0.664073941791429,
+        0.6606472046981695,
+        0.6688095609495432,
+        0.6672517481262362,
+        0.6712808423927733,
+        0.669621861851173,
+        0.6651251981337144,
+        0.6698053430152159,
+        0.6658692272465545,
+        0.6675185545255653,
+        0.6680944049933677,
+        0.6694720272848126,
+        0.6634207951198245
+      ],
+      "val_metric": "pearson_delta",
+      "test_trace": null,
+      "val_alt_trace": null,
+      "val_alt_metric": "energy",
+      "early_stopped": true,
+      "stop_step": 395000,
+      "ceiling": 800000,
+      "undertrained": false,
+      "ema_decay": null,
+      "ema_val_trace": null,
+      "ema_test_trace": null,
+      "ema_final_test": null,
+      "ema_best_step": null,
+      "genfrontier_selected": "best_val",
+      "genfrontier_val": 0.6758499541783918,
+      "swa_frac": null,
+      "swa_tail_n": 0
+    }
+  },
+  "protocol": {
+    "mode": "production",
+    "family": "cell",
+    "select_metric": "pearson_delta",
+    "val_metric": "pearson_delta",
+    "ceiling": 800000,
+    "eval_every": 1000,
+    "val_frac": 0.15,
+    "val_mode": "transductive",
+    "early_stop_patience": 200,
+    "early_stop_min_steps": 120000,
+    "arms": {
+      "distilled_plus_wkdf": {
+        "best_step": 166000,
+        "early_stopped": true,
+        "stop_step": 395000,
+        "ceiling": 800000,
+        "undertrained": false
+      }
+    },
+    "undertrained": false,
+    "trained_to_full": true,
+    "canonical": "select_metric=pearson_delta val_frac=0.15 eval_every=1000 early_stop_patience=200 early_stop_min_delta=0.0001 early_stop_ema=0.3 early_stop_min_steps=120000 ceiling=800000 (backstop; early-stop fires first, but never before min_steps)"
+  },
+  "n_toml_test": 735,
+  "n_split_test": 735,
+  "n_split_train": 348,
+  "n_eval_perts": 70,
+  "n_real_train_perts": 347,
+  "energy": {
+    "distilled_plus_wkdf": {
+      "n_perts": 70,
+      "median_energy_to_truth": 1.9161605834960938
+    },
+    "teacher": {
+      "n_perts": 70,
+      "median_energy_to_truth": 0.13015079498291016
+    },
+    "mean": {
+      "n_perts": 70,
+      "median_energy_to_truth": 0.2972850799560547
+    }
+  }
+}