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Squash history to purge LFS references to removed PDF archive

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  1. .gitattributes +60 -0
  2. README.md +138 -0
  3. poster_sentry_train.ndjson +0 -0
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+ *.joblib filter=lfs diff=lfs merge=lfs -text
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+ *.lfs.* filter=lfs diff=lfs merge=lfs -text
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+ *.safetensors filter=lfs diff=lfs merge=lfs -text
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+ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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+ *.tar.* filter=lfs diff=lfs merge=lfs -text
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+ *tfevents* filter=lfs diff=lfs merge=lfs -text
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+ # Audio files - uncompressed
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+ *.sam filter=lfs diff=lfs merge=lfs -text
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+ # Audio files - compressed
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+ *.wav filter=lfs diff=lfs merge=lfs -text
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+ # Image files - uncompressed
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+ *.tiff filter=lfs diff=lfs merge=lfs -text
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+ # Image files - compressed
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+ *.jpeg filter=lfs diff=lfs merge=lfs -text
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+ *.webp filter=lfs diff=lfs merge=lfs -text
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+ # Video files - compressed
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README.md ADDED
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+ ---
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+ license: mit
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+ language:
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+ - en
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+ tags:
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+ - text-classification
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+ - scientific-posters
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+ - poster-detection
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+ - poster-sentry
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+ - machine-actionable
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+ - FAIR-data
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+ - posters-science
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+ - quality-control
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+ - multimodal
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+ size_categories:
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+ - 1K<n<10K
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+ task_categories:
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+ - text-classification
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+ ---
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+
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+ <div align="center">
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+ <img src="https://huggingface.co/fairdataihub/poster-sentry/resolve/main/PosterSentry.png" alt="PosterSentry Logo" title="This image was generated by AI" width="300"/>
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+ </div>
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+
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+ # PosterSentry Training Data
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+
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+ Training dataset for [**PosterSentry**](https://huggingface.co/fairdataihub/poster-sentry) — the multimodal scientific poster classifier used in the [posters.science](https://posters.science) quality control pipeline.
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+
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+ Developed by the [**FAIR Data Innovations Hub**](https://fairdataihub.org/) at the California Medical Innovations Institute (CalMI²).
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+
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+ ## Dataset Description
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+
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+ Text extracted from **real scientific poster PDFs** and **real non-poster documents** — zero synthetic data. Every sample comes from an actual PDF downloaded from Zenodo or Figshare as part of the posters.science corpus.
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+
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+ This is a **balanced** dataset: 1,803 poster samples and 1,803 non-poster samples, drawn from the source corpus described below.
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+
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+ ### Source Corpus
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+
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+ Sampled from a collection of **30,000+ scientific PDFs** scraped from Zenodo and Figshare:
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+
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+ | Category | Count | Selection Method |
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+ |----------|-------|-----------------|
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+ | Repository-labeled posters | ~28,000 | Records tagged as "poster" in Zenodo/Figshare metadata |
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+ | Manually confirmed non-posters | 2,036 | Flagged by structural classifier, then human-reviewed |
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+ | Corrupt/unreadable | 58 | — |
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+
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+ Non-posters include multi-page papers, conference proceedings, abstract books, newsletters, project proposals, and other documents mislabeled as "posters" in repository metadata.
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+
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+ **Note on poster labels**: The poster class is drawn from repository records self-described as posters by their uploaders. These were not individually verified by human reviewers. When PosterSentry was later applied to the full 30K corpus, approximately 20% of repository-labeled "posters" were reclassified as non-posters, suggesting meaningful label noise in the broader corpus. The balanced training subset published here was randomly sampled from the repository-labeled poster pool.
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+
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+ ## Files
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+
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+ | File | Description | Samples |
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+ |------|-------------|---------|
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+ | `poster_sentry_train.ndjson` | Balanced training data (text + labels) | 3,606 |
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+
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+ ## Format
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+
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+ NDJSON (newline-delimited JSON) with `text` and `label` fields:
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+
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+ ```json
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+ {"text": "TITLE: Effects of Temperature on Enzyme Kinetics\nAUTHORS: A. Smith...", "label": "poster"}
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+ {"text": "Abstract. We present a novel approach to distributed computing...", "label": "non_poster"}
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+ ```
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+
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+ ## Label Distribution
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+
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+ | Label | Count | Description |
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+ |-------|-------|-------------|
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+ | `poster` | 1,803 | Text from first page of repository-labeled single-page scientific posters |
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+ | `non_poster` | 1,803 | Text from first page of manually confirmed non-poster documents |
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+
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+ Classes are perfectly balanced (1:1 ratio).
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+
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+ ## Data Collection Methodology
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+
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+ 1. **Corpus assembly**: 30K+ PDFs scraped from Zenodo and Figshare using the [poster-repo-scraper](https://github.com/fairdataihub/poster-repo-scraper), selecting records whose metadata indicated "poster"
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+ 2. **Non-poster identification**: A structural classifier using PDF features (page count, dimensions, file size) flagged 2,036 candidate non-posters, which were then manually reviewed and confirmed
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+ 3. **Text extraction**: First-page text extracted from each PDF using PyMuPDF, cleaned (whitespace normalization) and truncated to 4,000 characters
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+ 4. **Balanced sampling**: 1,803 samples randomly drawn from each class (limited by the smaller non-poster pool after feature extraction filtering)
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+
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+ ## Related Resources
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+
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+ | Resource | Link |
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+ |----------|------|
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+ | **PosterSentry model** | [fairdataihub/poster-sentry](https://huggingface.co/fairdataihub/poster-sentry) |
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+ | **poster-sentry** | [GitHub](https://github.com/fairdataihub/poster-sentry) |
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+ | **poster-sentry-training** | [GitHub](https://github.com/fairdataihub/poster-sentry-training) |
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+ | **Llama-3.1-8B-Poster-Extraction** | [fairdataihub/Llama-3.1-8B-Poster-Extraction](https://huggingface.co/fairdataihub/Llama-3.1-8B-Poster-Extraction) |
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+ | **poster2json library** | [PyPI](https://pypi.org/project/poster2json/) · [GitHub](https://github.com/fairdataihub/poster2json) |
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+ | **poster-json-schema** | [GitHub](https://github.com/fairdataihub/poster-json-schema) |
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+ | **Platform** | [posters.science](https://posters.science) |
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+
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+ ## Usage
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+
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+ ### Train PosterSentry from this data
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+
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+ ```bash
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+ pip install poster-sentry
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+ python scripts/train_poster_sentry.py --n-per-class 2000
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+ ```
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+
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+ ### Load directly with HuggingFace datasets
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+
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+ ```python
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+ from datasets import load_dataset
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+
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+ ds = load_dataset("fairdataihub/poster-sentry-training-data")
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+ print(ds["train"][0])
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+ # {"text": "TITLE: ...", "label": "poster"}
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+ ```
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+
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+ ### Use for PubGuard doc_type training
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+
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+ The poster texts in this dataset are also used by [PubGuard](https://huggingface.co/jimnoneill/pubguard-classifier) to train its `poster` document-type classification head.
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @dataset{poster_sentry_data_2026,
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+ title = {PosterSentry Training Data: Scientific Poster Text Corpus},
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+ author = {O'Neill, James and Soundarajan, Sanjay and Portillo, Dorian and Patel, Bhavesh},
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+ year = {2026},
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+ url = {https://huggingface.co/datasets/fairdataihub/poster-sentry-training-data},
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+ note = {Part of the posters.science initiative}
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+ }
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+ ```
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+
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+ ## License
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+
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+ MIT License — See [LICENSE](https://opensource.org/licenses/MIT) for details.
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+
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+ ## Acknowledgments
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+
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+ - [FAIR Data Innovations Hub](https://fairdataihub.org/) at California Medical Innovations Institute (CalMI²)
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+ - [posters.science](https://posters.science) platform
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+ - HuggingFace for dataset hosting infrastructure
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+ - Funded by The Navigation Fund ([10.71707/rk36-9x79](https://doi.org/10.71707/rk36-9x79)) — "Poster Sharing and Discovery Made Easy"
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