Upload tvillarr.py

tvillarr.py

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+import json, re
+import requests
+import sys, gzip
+import bibtexparser
+
+from tqdm import tqdm
+from urlextract import URLExtract
+
+utid: str = 'tvillarr'
+base: dict[str, str] = { 
+   'model':'https://huggingface.co/', 
+   'data': 'https://huggingface.co/datasets/', 
+   'source': 'https://raw.githubusercontent.com/'
+}
+
+# Path to README file in a HuggingFace repo
+hf_readme_path: str = '/raw/main/README.md'
+# Path to raw README file in GitHub repo
+gh_readme_path: str = '/master/README.md'
+gh_readme_path_alt: str = '/main/README.md'
+
+extU = URLExtract()
+
+#r1\b(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?!["&\'<>])[[:graph:]])+)\b'
+DOIpattern = r'\b(10\.\d{4,9}\/[-._;()/:A-Z0-9]+)\b/i'
+
+def extract_urls(content: str) -> list:
+   '''
+   Extracts URLs from provided text content
+
+   Args:
+      content (str): text to extract URLs from
+
+   Returns:
+      list: list of URLs found
+   '''
+   
+   res = extU.find_urls(content)
+   return res
+
+def extract_dois(content: str) -> list:
+   '''
+   Extracts DOIs from provided content following the regexp 
+
+   Args:
+      content (str): text to extract DOIs from
+
+   Returns:
+      list: list of DOIs found
+   '''
+   
+   res = re.findall(DOIpattern, content)
+   return res
+
+def extract_bibs(content: str) -> list:
+   '''
+   Extracts BIB entries from content following the regexp
+
+   Args:
+      content (str): text to extract BIBs from
+
+   Returns:
+      list: list of BIBS found 
+   '''
+
+   try: 
+      b = bibtexparser.loads(content)
+      bibs = b.entries
+   except:
+      bibs = []
+
+   return bibs
+
+def run(source_type: str) -> None:
+   with open(f"input/{utid}_{source_type}", 'r') as f:
+      for line in tqdm(f):
+         line = line.strip()
+
+         # Source (GitHub repos)
+         if source_type == "source":
+            # Splitting the line as source file format is num;repo
+            npapers, line = line.split(';')
+         
+            # Not using "github.com/" from line
+            current_url = f'{base[source_type]}{line[11:]}{gh_readme_path}'
+
+         # Model and Data
+         else:
+            current_url = f'{base[source_type]}{line}{hf_readme_path}'
+
+         r = requests.get(current_url)
+
+         # If the request isn't OK; mainly used for GitHub
+         if r.status_code != 200:
+            if source_type == "source":
+               # Trying to get main branch instead of master branch
+               current_url = f'{base[source_type]}{line[11:]}{gh_readme_path_alt}'
+               r = requests.get(current_url)
+
+               # If we're okay with new URL, then continue on
+               if r.status_code == 200:
+                  continue
+               # If not, just return URL back to original URL and request
+               else:
+                  current_url = f'{base[source_type]}{line[11:]}{gh_readme_path}'
+                  r = requests.get(current_url)
+
+         # print(f"Current URL: {current_url}")
+         content = r.text
+
+         urls = extract_urls(content)
+         # print(f"URLS: {urls}")
+         dois = extract_dois(content)
+         # print(f"DOIs: {dois}")
+         bibs = extract_bibs(content)
+         # print(f"BIBs: {bibs}")
+
+         res = {'ID': line, 'type': source_type, 'url': current_url, 'content': content, 'links': urls, 'dois': dois, 'bibs': bibs}
+
+         out = json.dumps(res, ensure_ascii=False)
+         output_file.write((out+"\n").encode())
+
+
+output_file = gzip.open(f"output/{utid}.json.gz", 'w')
+
+run("model")
+run("data")
+run("source")
+