Large Language Model-Informed Feature Discovery Improves Prediction and Interpretation of Credibility Perceptions of Visual Content

Abstract: In today's visually dominated social media landscape, predicting the perceived credibility of visual content and understanding what drives human judgment are crucial for countering misinformation. However, these tasks are challenging due to the diversity and richness of visual features. We introduce a Large Language Model (LLM)-informed feature discovery framework that leverages multimodal LLMs, such as GPT-4o, to evaluate content credibility and explain its reasoning. We extract and quantify interpretable features using targeted prompts and integrate them into machine learning models to improve credibility predictions. We tested this approach on 4,191 visual social media posts across eight topics in science, health, and politics, using credibility ratings from 5,355 crowdsourced workers. Our method outperformed zero-shot GPT-based predictions by 13 percent in R2, and revealed key features like information concreteness and image format. We discuss the implications for misinformation mitigation, visual credibility, and the role of LLMs in social science.

Yilang Peng
Sijia Qian
Yingdan Lu
Cuihua Shen


Pay Attention to What and Where? Interpretable Feature Extractor in Vision-based Deep Reinforcement Learning

Abstract: Current approaches in Explainable Deep Reinforcement Learning have limitations in which the attention mask has a displacement with the objects in visual input. This work addresses a spatial problem within traditional Convolutional Neural Networks (CNNs). We propose the Interpretable Feature Extractor (IFE) architecture, aimed at generating an accurate attention mask to illustrate both "what" and "where" the agent concentrates on in the spatial domain. Our design incorporates a Human-Understandable Encoding module to generate a fully interpretable attention mask, followed by an Agent-Friendly Encoding module to enhance the agent's learning efficiency. These two components together form the Interpretable Feature Extractor for vision-based deep reinforcement learning to enable the model's interpretability. The resulting attention mask is consistent, highly understandable by humans, accurate in spatial dimension, and effectively highlights important objects or locations in visual input. The Interpretable Feature Extractor is integrated into the Fast and Data-efficient Rainbow framework, and evaluated on 57 ATARI games to show the effectiveness of the proposed approach on Spatial Preservation, Interpretability, and Data-efficiency. Finally, we showcase the versatility of our approach by incorporating the IFE into the Asynchronous Advantage Actor-Critic Model.

IEEE International Joint Conference on Neural Network


How do Large Language Models Understand Relevance? A Mechanistic Interpretability Perspective

Abstract: Recent studies have shown that large language models (LLMs) can assess relevance and support information retrieval (IR) tasks such as document ranking and relevance judgment generation. However, the internal mechanisms by which off-the-shelf LLMs understand and operationalize relevance remain largely unexplored. In this paper, we systematically investigate how different LLM modules contribute to relevance judgment through the lens of mechanistic interpretability. Using activation patching techniques, we analyze the roles of various model components and identify a multi-stage, progressive process in generating either pointwise or pairwise relevance judgment. Specifically, LLMs first extract query and document information in the early layers, then process relevance information according to instructions in the middle layers, and finally utilize specific attention heads in the later layers to generate relevance judgments in the required format. Our findings provide insights into the mechanisms underlying relevance assessment in LLMs, offering valuable implications for future research on leveraging LLMs for IR tasks.


Localized Definitions and Distributed Reasoning: A Proof-of-Concept Mechanistic Interpretability Study via Activation Patching

Abstract: This study investigates the localization of knowledge representation in fine-tuned GPT-2 models using Causal Layer Attribution via Activation Patching (CLAP), a method that identifies critical neural layers responsible for correct answer generation. The model was fine-tuned on 9,958 PubMed abstracts (epilepsy: 20,595 mentions, EEG: 11,674 mentions, seizure: 13,921 mentions) using two configurations with validation loss monitoring for early stopping. CLAP involved (1) caching clean (correct answer) and corrupted (incorrect answer) activations, (2) computing logit difference to quantify model preference, and (3) patching corrupted activations with clean ones to assess recovery. Results revealed three findings: First, patching the first feedforward layer recovered 56% of correct preference, demonstrating that associative knowledge is distributed across multiple layers. Second, patching the final output layer completely restored accuracy (100% recovery), indicating that definitional knowledge is localised. The stronger clean logit difference for definitional questions further supports this localized representation. Third, minimal recovery from convolutional layer patching (13.6%) suggests low-level features contribute marginally to high-level reasoning. Statistical analysis confirmed significant layer-specific effects (p<0.01). These findings demonstrate that factual knowledge is more localized and associative knowledge depends on distributed representations. We also showed that editing efficacy depends on task type. Our findings not only reconcile conflicting observations about localization in model editing but also emphasize on using task-adaptive techniques for reliable, interpretable updates.


Fast Fourier Correlation is a Highly Efficient and Accurate Feature Attribution Algorithm from the Perspective of Control Theory and Game Theory

Abstract: The study of neural networks from the perspective of Fourier features has garnered significant attention. While existing analytical research suggests that neural networks tend to learn low-frequency features, a clear attribution method for identifying the specific learned Fourier features has remained elusive. To bridge this gap, we propose a novel Fourier feature attribution method grounded in signal decomposition theory. Additionally, we analyze the differences between game-theoretic attribution metrics for Fourier and spatial domain features, demonstrating that game-theoretic evaluation metrics are better suited for Fourier-based feature attribution. Our experiments show that Fourier feature attribution exhibits superior feature selection capabilities compared to spatial domain attribution methods. For instance, in the case of Vision Transformers (ViTs) on the ImageNet dataset, only $8\%$ of the Fourier features are required to maintain the original predictions for $80\%$ of the samples. Furthermore, we compare the specificity of features identified by our method against traditional spatial domain attribution methods. Results reveal that Fourier features exhibit greater intra-class concentration and inter-class distinctiveness, indicating their potential for more efficient classification and explainable AI algorithms.

Zechen Liu
Feiyang Zhang
Wei Song
Xiang Li
Wei Wei


Evaluating and Designing Sparse Autoencoders by Approximating Quasi-Orthogonality

Abstract: Sparse autoencoders (SAEs) are widely used in mechanistic interpretability research for large language models; however, the state-of-the-art method of using $k$-sparse autoencoders lacks a theoretical grounding for selecting the hyperparameter $k$ that represents the number of nonzero activations, often denoted by $\ell_0$. In this paper, we reveal a theoretical link that the $\ell_2$-norm of the sparse feature vector can be approximated with the $\ell_2$-norm of the dense vector with a closed-form error, which allows sparse autoencoders to be trained without the need to manually determine $\ell_0$. Specifically, we validate two applications of our theoretical findings. First, we introduce a new methodology that can assess the feature activations of pre-trained SAEs by computing the theoretically expected value from the input embedding, which has been overlooked by existing SAE evaluation methods and loss functions. Second, we introduce a novel activation function, top-AFA, which builds upon our formulation of approximate feature activation (AFA). This function enables top-$k$ style activation without requiring a constant hyperparameter $k$ to be tuned, dynamically determining the number of activated features for each input. By training SAEs on three intermediate layers to reconstruct GPT2 hidden embeddings for over 80 million tokens from the OpenWebText dataset, we demonstrate the empirical merits of this approach and compare it with current state-of-the-art $k$-sparse autoencoders. Our code is available at: https://github.com/SewoongLee/top-afa-sae.

Sewoong Lee
Adam Davies
Marc E. Canby
Julia Hockenmaier


Identifying Sparsely Active Circuits Through Local Loss Landscape Decomposition

Abstract: Much of mechanistic interpretability has focused on understanding the activation spaces of large neural networks. However, activation space-based approaches reveal little about the underlying circuitry used to compute features. To better understand the circuits employed by models, we introduce a new decomposition method called Local Loss Landscape Decomposition (L3D). L3D identifies a set of low-rank subnetworks: directions in parameter space of which a subset can reconstruct the gradient of the loss between any sample's output and a reference output vector. We design a series of progressively more challenging toy models with well-defined subnetworks and show that L3D can nearly perfectly recover the associated subnetworks. Additionally, we investigate the extent to which perturbing the model in the direction of a given subnetwork affects only the relevant subset of samples. Finally, we apply L3D to a real-world transformer model and a convolutional neural network, demonstrating its potential to identify interpretable and relevant circuits in parameter space.

Brianna Chrisman
Lucius Bushnaq
Lee Sharkey


VITAL: More Understandable Feature Visualization through Distribution Alignment and Relevant Information Flow

Abstract: Neural networks are widely adopted to solve complex and challenging tasks. Especially in high-stakes decision-making, understanding their reasoning process is crucial, yet proves challenging for modern deep networks. Feature visualization (FV) is a powerful tool to decode what information neurons are responding to and hence to better understand the reasoning behind such networks. In particular, in FV we generate human-understandable images that reflect the information detected by neurons of interest. However, current methods often yield unrecognizable visualizations, exhibiting repetitive patterns and visual artifacts that are hard to understand for a human. To address these problems, we propose to guide FV through statistics of real image features combined with measures of relevant network flow to generate prototypical images. Our approach yields human-understandable visualizations that both qualitatively and quantitatively improve over state-of-the-art FVs across various architectures. As such, it can be used to decode which information the network uses, complementing mechanistic circuits that identify where it is encoded. Code is available at: https://github.com/adagorgun/VITAL

IEEE International Conference on Computer Vision


I Have Covered All the Bases Here: Interpreting Reasoning Features in Large Language Models via Sparse Autoencoders

Abstract: Recent LLMs like DeepSeek-R1 have demonstrated state-of-the-art performance by integrating deep thinking and complex reasoning during generation. However, the internal mechanisms behind these reasoning processes remain unexplored. We observe reasoning LLMs consistently use vocabulary associated with human reasoning processes. We hypothesize these words correspond to specific reasoning moments within the models' internal mechanisms. To test this hypothesis, we employ Sparse Autoencoders (SAEs), a technique for sparse decomposition of neural network activations into human-interpretable features. We introduce ReasonScore, an automatic metric to identify active SAE features during these reasoning moments. We perform manual and automatic interpretation of the features detected by our metric, and find those with activation patterns matching uncertainty, exploratory thinking, and reflection. Through steering experiments, we demonstrate that amplifying these features increases performance on reasoning-intensive benchmarks (+2.2%) while producing longer reasoning traces (+20.5%). Using the model diffing technique, we provide evidence that these features are present only in models with reasoning capabilities. Our work provides the first step towards a mechanistic understanding of reasoning in LLMs. Code available at https://github.com/AIRI-Institute/SAE-Reasoning

Andrey Galichin
Alexey Dontsov
Polina Druzhinina
Anton Razzhigaev
Oleg Y. Rogov
Elena Tutubalina
Ivan Oseledets

AAAI Conference on Artificial Intelligence


Mechanistic Interpretability of Fine-Tuned Vision Transformers on Distorted Images: Decoding Attention Head Behavior for Transparent and Trustworthy AI

Abstract: Mechanistic interpretability improves the safety, reliability, and robustness of large AI models. This study examined individual attention heads in vision transformers (ViTs) fine tuned on distorted 2D spectrogram images containing non relevant content (axis labels, titles, color bars). By introducing extraneous features, the study analyzed how transformer components processed unrelated information, using mechanistic interpretability to debug issues and reveal insights into transformer architectures. Attention maps assessed head contributions across layers. Heads in early layers (1 to 3) showed minimal task impact with ablation increased MSE loss slightly (μ=0.11%, σ=0.09%), indicating focus on less critical low level features. In contrast, deeper heads (e.g., layer 6) caused a threefold higher loss increase (μ=0.34%, σ=0.02%), demonstrating greater task importance. Intermediate layers (6 to 11) exhibited monosemantic behavior, attending exclusively to chirp regions. Some early heads (1 to 4) were monosemantic but non task relevant (e.g. text detectors, edge or corner detectors). Attention maps distinguished monosemantic heads (precise chirp localization) from polysemantic heads (multiple irrelevant regions). These findings revealed functional specialization in ViTs, showing how heads processed relevant vs. extraneous information. By decomposing transformers into interpretable components, this work enhanced model understanding, identified vulnerabilities, and advanced safer, more transparent AI.


Interpretable Feature Interaction via Statistical Self-supervised Learning on Tabular Data

Abstract: In high-dimensional and high-stakes contexts, ensuring both rigorous statistical guarantees and interpretability in feature extraction from complex tabular data remains a formidable challenge. Traditional methods such as Principal Component Analysis (PCA) reduce dimensionality and identify key features that explain the most variance, but are constrained by their reliance on linear assumptions. In contrast, neural networks offer assumption-free feature extraction through self-supervised learning techniques such as autoencoders, though their interpretability remains a challenge in fields requiring transparency. To address this gap, this paper introduces Spofe, a novel self-supervised machine learning pipeline that marries the power of kernel principal components for capturing nonlinear dependencies with a sparse and principled polynomial representation to achieve clear interpretability with statistical rigor. Underpinning our approach is a robust theoretical framework that delivers precise error bounds and rigorous false discovery rate (FDR) control via a multi-objective knockoff selection procedure; it effectively bridges the gap between data-driven complexity and statistical reliability via three stages: (1) generating self-supervised signals using kernel principal components to model complex patterns, (2) distilling these signals into sparse polynomial functions for improved interpretability, and (3) applying a multi-objective knockoff selection procedure with significance testing to rigorously identify important features. Extensive experiments on diverse real-world datasets demonstrate the effectiveness of Spofe, consistently surpassing KPCA, SKPCA, and other methods in feature selection for regression and classification tasks. Visualization and case studies highlight its ability to uncover key insights, enhancing interpretability and practical utility.


Learning Multi-Level Features with Matryoshka Sparse Autoencoders

Abstract: Sparse autoencoders (SAEs) have emerged as a powerful tool for interpreting neural networks by extracting the concepts represented in their activations. However, choosing the size of the SAE dictionary (i.e. number of learned concepts) creates a tension: as dictionary size increases to capture more relevant concepts, sparsity incentivizes features to be split or absorbed into more specific features, leaving high-level features missing or warped. We introduce Matryoshka SAEs, a novel variant that addresses these issues by simultaneously training multiple nested dictionaries of increasing size, forcing the smaller dictionaries to independently reconstruct the inputs without using the larger dictionaries. This organizes features hierarchically - the smaller dictionaries learn general concepts, while the larger dictionaries learn more specific concepts, without incentive to absorb the high-level features. We train Matryoshka SAEs on Gemma-2-2B and TinyStories and find superior performance on sparse probing and targeted concept erasure tasks, more disentangled concept representations, and reduced feature absorption. While there is a minor tradeoff with reconstruction performance, we believe Matryoshka SAEs are a superior alternative for practical tasks, as they enable training arbitrarily large SAEs while retaining interpretable features at different levels of abstraction.

Bart Bussmann
Noa Nabeshima
Adam Karvonen
Neel Nanda

International Conference on Machine Learning


Revisiting End-To-End Sparse Autoencoder Training: A Short Finetune Is All You Need

Abstract: Sparse autoencoders (SAEs) are widely used for interpreting language model activations. A key evaluation metric is the increase in cross-entropy loss between the original model logits and the reconstructed model logits when replacing model activations with SAE reconstructions. Typically, SAEs are trained solely on mean squared error (MSE) when reconstructing precomputed, shuffled activations. Recent work introduced training SAEs directly with a combination of KL divergence and MSE ("end-to-end" SAEs), significantly improving reconstruction accuracy at the cost of substantially increased computation, which has limited their widespread adoption. We propose a brief KL+MSE fine-tuning step applied only to the final 25M training tokens (just a few percent of typical training budgets) that achieves comparable improvements, reducing the cross-entropy loss gap by 20-50%, while incurring minimal additional computational cost. We further find that multiple fine-tuning methods (KL fine-tuning, LoRA adapters, linear adapters) yield similar, non-additive cross-entropy improvements, suggesting a common, easily correctable error source in MSE-trained SAEs. We demonstrate a straightforward method for effectively transferring hyperparameters and sparsity penalties between training phases despite scale differences between KL and MSE losses. While both ReLU and TopK SAEs see significant cross-entropy loss improvements, evaluations on supervised SAEBench metrics yield mixed results, with improvements on some metrics and decreases on others, depending on both the SAE architecture and downstream task. Nonetheless, our method may offer meaningful improvements in interpretability applications such as circuit analysis with minor additional cost.


TinySQL: A Progressive Text-to-SQL Dataset for Mechanistic Interpretability Research

Abstract: Mechanistic interpretability research faces a gap between analyzing simple circuits in toy tasks and discovering features in large models. To bridge this gap, we propose text-to-SQL generation as an ideal task to study, as it combines the formal structure of toy tasks with real-world complexity. We introduce TinySQL, a synthetic dataset, progressing from basic to advanced SQL operations, and train models ranging from 33M to 1B parameters to establish a comprehensive testbed for interpretability. We apply multiple complementary interpretability techniques, including Edge Attribution Patching and Sparse Autoencoders, to identify minimal circuits and components supporting SQL generation. We compare circuits for different SQL subskills, evaluating their minimality, reliability, and identifiability. Finally, we conduct a layerwise logit lens analysis to reveal how models compose SQL queries across layers: from intent recognition to schema resolution to structured generation. Our work provides a robust framework for probing and comparing interpretability methods in a structured, progressively complex setting.

Abir Harrasse
Philip Quirke
Clement Neo
Dhruv Nathawani
Luke Marks
Amir Abdullah

Conference on Empirical Methods in Natural Language Processing


Automation and Feature Selection Enhancement with Reinforcement Learning (RL)

Abstract: Effective feature selection, representation and transformation are principal steps in machine learning to improve prediction accuracy, model generalization and computational efficiency. Reinforcement learning provides a new perspective towards balanced exploration of optimal feature subset using multi-agent and single-agent models. Interactive reinforcement learning integrated with decision tree improves feature knowledge, state representation and selection efficiency, while diversified teaching strategies improve both selection quality and efficiency. The state representation can further be enhanced by scanning features sequentially along with the usage of convolutional auto-encoder. Monte Carlo-based reinforced feature selection(MCRFS), a single-agent feature selection method reduces computational burden by incorporating early-stopping and reward-level interactive strategies. A dual-agent RL framework is also introduced that collectively selects features and instances, capturing the interactions between them. This enables the agents to navigate through complex data spaces. To outperform the traditional feature engineering, cascading reinforced agents are used to iteratively improve the feature space, which is a self-optimizing framework. The blend of reinforcement learning, multi-agent systems, and bandit-based approaches offers exciting paths for studying scalable and interpretable machine learning solutions to handle high-dimensional data and challenging predictive tasks.


PrivacyScalpel: Enhancing LLM Privacy via Interpretable Feature Intervention with Sparse Autoencoders

Abstract: Large Language Models (LLMs) have demonstrated remarkable capabilities in natural language processing but also pose significant privacy risks by memorizing and leaking Personally Identifiable Information (PII). Existing mitigation strategies, such as differential privacy and neuron-level interventions, often degrade model utility or fail to effectively prevent leakage. To address this challenge, we introduce PrivacyScalpel, a novel privacy-preserving framework that leverages LLM interpretability techniques to identify and mitigate PII leakage while maintaining performance. PrivacyScalpel comprises three key steps: (1) Feature Probing, which identifies layers in the model that encode PII-rich representations, (2) Sparse Autoencoding, where a k-Sparse Autoencoder (k-SAE) disentangles and isolates privacy-sensitive features, and (3) Feature-Level Interventions, which employ targeted ablation and vector steering to suppress PII leakage. Our empirical evaluation on Gemma2-2b and Llama2-7b, fine-tuned on the Enron dataset, shows that PrivacyScalpel significantly reduces email leakage from 5.15\% to as low as 0.0\%, while maintaining over 99.4\% of the original model's utility. Notably, our method outperforms neuron-level interventions in privacy-utility trade-offs, demonstrating that acting on sparse, monosemantic features is more effective than manipulating polysemantic neurons. Beyond improving LLM privacy, our approach offers insights into the mechanisms underlying PII memorization, contributing to the broader field of model interpretability and secure AI deployment.

Ahmed Frikha
Muhammad Reza Ar Razi
Krishna Kanth Nakka
Ricardo Mendes
Xue Jiang
Xuebing Zhou


HyperDAS: Towards Automating Mechanistic Interpretability with Hypernetworks

Abstract: Mechanistic interpretability has made great strides in identifying neural network features (e.g., directions in hidden activation space) that mediate concepts(e.g., the birth year of a person) and enable predictable manipulation. Distributed alignment search (DAS) leverages supervision from counterfactual data to learn concept features within hidden states, but DAS assumes we can afford to conduct a brute force search over potential feature locations. To address this, we present HyperDAS, a transformer-based hypernetwork architecture that (1) automatically locates the token-positions of the residual stream that a concept is realized in and (2) constructs features of those residual stream vectors for the concept. In experiments with Llama3-8B, HyperDAS achieves state-of-the-art performance on the RAVEL benchmark for disentangling concepts in hidden states. In addition, we review the design decisions we made to mitigate the concern that HyperDAS (like all powerful interpretabilty methods) might inject new information into the target model rather than faithfully interpreting it.

Jiuding Sun
Jing Huang
Sidharth Baskaran
Karel D'Oosterlinck
Christopher Potts
Michael Sklar
Atticus Geiger

International Conference on Learning Representations


SAEBench: A Comprehensive Benchmark for Sparse Autoencoders in Language Model Interpretability

Abstract: Sparse autoencoders (SAEs) are a popular technique for interpreting language model activations, and there is extensive recent work on improving SAE effectiveness. However, most prior work evaluates progress using unsupervised proxy metrics with unclear practical relevance. We introduce SAEBench, a comprehensive evaluation suite that measures SAE performance across eight diverse metrics, spanning interpretability, feature disentanglement and practical applications like unlearning. To enable systematic comparison, we open-source a suite of over 200 SAEs across eight recently proposed SAE architectures and training algorithms. Our evaluation reveals that gains on proxy metrics do not reliably translate to better practical performance. For instance, while Matryoshka SAEs slightly underperform on existing proxy metrics, they substantially outperform other architectures on feature disentanglement metrics; moreover, this advantage grows with SAE scale. By providing a standardized framework for measuring progress in SAE development, SAEBench enables researchers to study scaling trends and make nuanced comparisons between different SAE architectures and training methodologies. Our interactive interface enables researchers to flexibly visualize relationships between metrics across hundreds of open-source SAEs at: www.neuronpedia.org/sae-bench

Adam Karvonen
Can Rager
Johnny Lin
Curt Tigges
Joseph Bloom
David Chanin
Yeu-Tong Lau
Eoin Farrell
Callum McDougall
Kola Ayonrinde
Demian Till
Matthew Wearden
Arthur Conmy
Samuel Marks
Neel Nanda


Route Sparse Autoencoder to Interpret Large Language Models

Abstract: Mechanistic interpretability of large language models (LLMs) aims to uncover the internal processes of information propagation and reasoning. Sparse autoencoders (SAEs) have demonstrated promise in this domain by extracting interpretable and monosemantic features. However, prior works primarily focus on feature extraction from a single layer, failing to effectively capture activations that span multiple layers. In this paper, we introduce Route Sparse Autoencoder (RouteSAE), a new framework that integrates a routing mechanism with a shared SAE to efficiently extract features from multiple layers. It dynamically assigns weights to activations from different layers, incurring minimal parameter overhead while achieving high interpretability and flexibility for targeted feature manipulation. We evaluate RouteSAE through extensive experiments on Llama-3.2-1B-Instruct. Specifically, under the same sparsity constraint of 64, RouteSAE extracts 22.5% more features than baseline SAEs while achieving a 22.3% higher interpretability score. These results underscore the potential of RouteSAE as a scalable and effective method for LLM interpretability, with applications in feature discovery and model intervention. Our codes are available at https://github.com/swei2001/RouteSAEs.

Wei Shi
Sihang Li
Tao Liang
Mingyang Wan
Guojun Ma
Xiang Wang
Xiangnan He


Birds look like cars: Adversarial analysis of intrinsically interpretable deep learning

Abstract: A common belief is that intrinsically interpretable deep learning models ensure a correct, intuitive understanding of their behavior and offer greater robustness against accidental errors or intentional manipulation. However, these beliefs have not been comprehensively verified, and growing evidence casts doubt on them. In this paper, we highlight the risks related to overreliance and susceptibility to adversarial manipulation of these so-called "intrinsically (aka inherently) interpretable" models by design. We introduce two strategies for adversarial analysis with prototype manipulation and backdoor attacks against prototype-based networks, and discuss how concept bottleneck models defend against these attacks. Fooling the model's reasoning by exploiting its use of latent prototypes manifests the inherent uninterpretability of deep neural networks, leading to a false sense of security reinforced by a visual confirmation bias. The reported limitations of part-prototype networks put their trustworthiness and applicability into question, motivating further work on the robustness and alignment of (deep) interpretable models.


Towards Interpretable Protein Structure Prediction with Sparse Autoencoders

Abstract: Protein language models have revolutionized structure prediction, but their nonlinear nature obscures how sequence representations inform structure prediction. While sparse autoencoders (SAEs) offer a path to interpretability here by learning linear representations in high-dimensional space, their application has been limited to smaller protein language models unable to perform structure prediction. In this work, we make two key advances: (1) we scale SAEs to ESM2-3B, the base model for ESMFold, enabling mechanistic interpretability of protein structure prediction for the first time, and (2) we adapt Matryoshka SAEs for protein language models, which learn hierarchically organized features by forcing nested groups of latents to reconstruct inputs independently. We demonstrate that our Matryoshka SAEs achieve comparable or better performance than standard architectures. Through comprehensive evaluations, we show that SAEs trained on ESM2-3B significantly outperform those trained on smaller models for both biological concept discovery and contact map prediction. Finally, we present an initial case study demonstrating how our approach enables targeted steering of ESMFold predictions, increasing structure solvent accessibility while fixing the input sequence. To facilitate further investigation by the broader community, we open-source our code, dataset, pretrained models https://github.com/johnyang101/reticular-sae , and visualizer https://sae.reticular.ai .

Nithin Parsan
David J. Yang
John J. Yang


TIDE : Temporal-Aware Sparse Autoencoders for Interpretable Diffusion Transformers in Image Generation

Abstract: Diffusion Transformers (DiTs) are a powerful yet underexplored class of generative models compared to U-Net-based diffusion architectures. We propose TIDE-Temporal-aware sparse autoencoders for Interpretable Diffusion transformErs-a framework designed to extract sparse, interpretable activation features across timesteps in DiTs. TIDE effectively captures temporally-varying representations and reveals that DiTs naturally learn hierarchical semantics (e.g., 3D structure, object class, and fine-grained concepts) during large-scale pretraining. Experiments show that TIDE enhances interpretability and controllability while maintaining reasonable generation quality, enabling applications such as safe image editing and style transfer.

Victor Shea-Jay Huang
Le Zhuo
Yi Xin
Zhaokai Wang
Fu-Yun Wang
Yuchi Wang
Renrui Zhang
Peng Gao
Hongsheng Li


Personalized Convolutional Dictionary Learning of Physiological Time Series

Abstract: Human physiological signals tend to exhibit both global and local structures: the former are shared across a population, while the latter reflect inter-individual variability. For instance, kinetic measurements of the gait cycle during locomotion present common characteristics, although idiosyncrasies may be observed due to biomechanical disposition or pathology. To better represent datasets with local-global structure, this work extends Convolutional Dictionary Learning (CDL), a popular method for learning interpretable representations, or dictionaries, of time-series data. In particular, we propose Personalized CDL (PerCDL), in which a local dictionary models local information as a personalized spatiotemporal transformation of a global dictionary. The transformation is learnable and can combine operations such as time warping and rotation. Formal computational and statistical guarantees for PerCDL are provided and its effectiveness on synthetic and real human locomotion data is demonstrated.

Axel Roques
Samuel Gruffaz
Kyurae Kim
Alain Oliviero-Durmus
Laurent Oudre

International Conference on Artificial Intelligence and Statistics


A Survey on Sparse Autoencoders: Interpreting the Internal Mechanisms of Large Language Models

Abstract: Large Language Models (LLMs) have transformed natural language processing, yet their internal mechanisms remain largely opaque. Recently, mechanistic interpretability has attracted significant attention from the research community as a means to understand the inner workings of LLMs. Among various mechanistic interpretability approaches, Sparse Autoencoders (SAEs) have emerged as a promising method due to their ability to disentangle the complex, superimposed features within LLMs into more interpretable components. This paper presents a comprehensive survey of SAEs for interpreting and understanding the internal workings of LLMs. Our major contributions include: (1) exploring the technical framework of SAEs, covering basic architecture, design improvements, and effective training strategies; (2) examining different approaches to explaining SAE features, categorized into input-based and output-based explanation methods; (3) discussing evaluation methods for assessing SAE performance, covering both structural and functional metrics; and (4) investigating real-world applications of SAEs in understanding and manipulating LLM behaviors.

Dong Shu
Xuansheng Wu
Haiyan Zhao
Daking Rai
Ziyu Yao
Ninghao Liu
Mengnan Du


Feature-Level Insights into Artificial Text Detection with Sparse Autoencoders

Abstract: Artificial Text Detection (ATD) is becoming increasingly important with the rise of advanced Large Language Models (LLMs). Despite numerous efforts, no single algorithm performs consistently well across different types of unseen text or guarantees effective generalization to new LLMs. Interpretability plays a crucial role in achieving this goal. In this study, we enhance ATD interpretability by using Sparse Autoencoders (SAE) to extract features from Gemma-2-2b residual stream. We identify both interpretable and efficient features, analyzing their semantics and relevance through domain- and model-specific statistics, a steering approach, and manual or LLM-based interpretation. Our methods offer valuable insights into how texts from various models differ from human-written content. We show that modern LLMs have a distinct writing style, especially in information-dense domains, even though they can produce human-like outputs with personalized prompts.

Kristian Kuznetsov
Laida Kushnareva
Polina Druzhinina
Anton Razzhigaev
Anastasia Voznyuk
Irina Piontkovskaya
Evgeny Burnaev
Serguei Barannikov

Annual Meeting of the Association for Computational Linguistics


LensDFF: Language-enhanced Sparse Feature Distillation for Efficient Few-Shot Dexterous Manipulation

Abstract: Learning dexterous manipulation from few-shot demonstrations is a significant yet challenging problem for advanced, human-like robotic systems. Dense distilled feature fields have addressed this challenge by distilling rich semantic features from 2D visual foundation models into the 3D domain. However, their reliance on neural rendering models such as Neural Radiance Fields (NeRF) or Gaussian Splatting results in high computational costs. In contrast, previous approaches based on sparse feature fields either suffer from inefficiencies due to multi-view dependencies and extensive training or lack sufficient grasp dexterity. To overcome these limitations, we propose Language-ENhanced Sparse Distilled Feature Field (LensDFF), which efficiently distills view-consistent 2D features onto 3D points using our novel language-enhanced feature fusion strategy, thereby enabling single-view few-shot generalization. Based on LensDFF, we further introduce a few-shot dexterous manipulation framework that integrates grasp primitives into the demonstrations to generate stable and highly dexterous grasps. Moreover, we present a real2sim grasp evaluation pipeline for efficient grasp assessment and hyperparameter tuning. Through extensive simulation experiments based on the real2sim pipeline and real-world experiments, our approach achieves competitive grasping performance, outperforming state-of-the-art approaches.

Qian Feng
David S. Martinez Lema
Jianxiang Feng
Zhaopeng Chen
Alois Knoll

IEEE/RJS International Conference on Intelligent RObots and Systems


From superposition to sparse codes: interpretable representations in neural networks

Abstract: Understanding how information is represented in neural networks is a fundamental challenge in both neuroscience and artificial intelligence. Despite their nonlinear architectures, recent evidence suggests that neural networks encode features in superposition, meaning that input concepts are linearly overlaid within the network's representations. We present a perspective that explains this phenomenon and provides a foundation for extracting interpretable representations from neural activations. Our theoretical framework consists of three steps: (1) Identifiability theory shows that neural networks trained for classification recover latent features up to a linear transformation. (2) Sparse coding methods can extract disentangled features from these representations by leveraging principles from compressed sensing. (3) Quantitative interpretability metrics provide a means to assess the success of these methods, ensuring that extracted features align with human-interpretable concepts. By bridging insights from theoretical neuroscience, representation learning, and interpretability research, we propose an emerging perspective on understanding neural representations in both artificial and biological systems. Our arguments have implications for neural coding theories, AI transparency, and the broader goal of making deep learning models more interpretable.

David Klindt
Charles O'Neill
Patrik Reizinger
Harald Maurer
Nina Miolane


Superscopes: Amplifying Internal Feature Representations for Language Model Interpretation

Abstract: Understanding and interpreting the internal representations of large language models (LLMs) remains an open challenge. Patchscopes introduced a method for probing internal activations by patching them into new prompts, prompting models to self-explain their hidden representations. We introduce Superscopes, a technique that systematically amplifies superposed features in MLP outputs (multilayer perceptron) and hidden states before patching them into new contexts. Inspired by the "features as directions" perspective and the Classifier-Free Guidance (CFG) approach from diffusion models, Superscopes amplifies weak but meaningful features, enabling the interpretation of internal representations that previous methods failed to explain-all without requiring additional training. This approach provides new insights into how LLMs build context and represent complex concepts, further advancing mechanistic interpretability.


Steering Large Language Model Activations in Sparse Spaces

Abstract: A key challenge in AI alignment is guiding large language models (LLMs) to follow desired behaviors at test time. Activation steering, which modifies internal model activations during inference, offers a potential solution. However, prior work in dense activation spaces struggles with superposition, wherein multiple features become entangled, limiting interpretability and precise control. In contrast, sparse representations provide an untapped opportunity for more interpretable behavior modulation. In this work, we introduce sparse activation steering (SAS), a method that leverages sparse autoencoders (SAEs) to steer LLM behavior in sparse spaces. By isolating behavior-specific features through a contrastive prompt-pairing approach, we define a set of features that can selectively reinforce or suppress behaviors. Experiments on Gemma 2 LLMs show that SAS vectors enable nuanced behavioral modulation and finer-grained control. Furthermore, scaling SAEs improves monosemanticity of SAS vectors, suggesting more reliable and interpretable interventions.

Reza Bayat
Ali Rahimi-Kalahroudi
Mohammad Pezeshki
Sarath Chandar
Pascal Vincent


Everything, Everywhere, All at Once: Is Mechanistic Interpretability Identifiable?

Abstract: As AI systems are used in high-stakes applications, ensuring interpretability is crucial. Mechanistic Interpretability (MI) aims to reverse-engineer neural networks by extracting human-understandable algorithms to explain their behavior. This work examines a key question: for a given behavior, and under MI's criteria, does a unique explanation exist? Drawing on identifiability in statistics, where parameters are uniquely inferred under specific assumptions, we explore the identifiability of MI explanations. We identify two main MI strategies: (1) "where-then-what," which isolates a circuit replicating model behavior before interpreting it, and (2) "what-then-where," which starts with candidate algorithms and searches for neural activation subspaces implementing them, using causal alignment. We test both strategies on Boolean functions and small multi-layer perceptrons, fully enumerating candidate explanations. Our experiments reveal systematic non-identifiability: multiple circuits can replicate behavior, a circuit can have multiple interpretations, several algorithms can align with the network, and one algorithm can align with different subspaces. Is uniqueness necessary? A pragmatic approach may require only predictive and manipulability standards. If uniqueness is essential for understanding, stricter criteria may be needed. We also reference the inner interpretability framework, which validates explanations through multiple criteria. This work contributes to defining explanation standards in AI.

Maxime Méloux
Silviu Maniu
François Portet
Maxime Peyrard


Interpreting CLIP with Hierarchical Sparse Autoencoders

Abstract: Sparse autoencoders (SAEs) are useful for detecting and steering interpretable features in neural networks, with particular potential for understanding complex multimodal representations. Given their ability to uncover interpretable features, SAEs are particularly valuable for analyzing large-scale vision-language models (e.g., CLIP and SigLIP), which are fundamental building blocks in modern systems yet remain challenging to interpret and control. However, current SAE methods are limited by optimizing both reconstruction quality and sparsity simultaneously, as they rely on either activation suppression or rigid sparsity constraints. To this end, we introduce Matryoshka SAE (MSAE), a new architecture that learns hierarchical representations at multiple granularities simultaneously, enabling a direct optimization of both metrics without compromise. MSAE establishes a new state-of-the-art Pareto frontier between reconstruction quality and sparsity for CLIP, achieving 0.99 cosine similarity and less than 0.1 fraction of variance unexplained while maintaining ~80% sparsity. Finally, we demonstrate the utility of MSAE as a tool for interpreting and controlling CLIP by extracting over 120 semantic concepts from its representation to perform concept-based similarity search and bias analysis in downstream tasks like CelebA. We make the codebase available at https://github.com/WolodjaZ/MSAE.

Vladimir Zaigrajew
Hubert Baniecki
Przemyslaw Biecek


Jacobian Sparse Autoencoders: Sparsify Computations, Not Just Activations

Abstract: Sparse autoencoders (SAEs) have been successfully used to discover sparse and human-interpretable representations of the latent activations of LLMs. However, we would ultimately like to understand the computations performed by LLMs and not just their representations. The extent to which SAEs can help us understand computations is unclear because they are not designed to "sparsify" computations in any sense, only latent activations. To solve this, we propose Jacobian SAEs (JSAEs), which yield not only sparsity in the input and output activations of a given model component but also sparsity in the computation (formally, the Jacobian) connecting them. With a naïve implementation, the Jacobians in LLMs would be computationally intractable due to their size. One key technical contribution is thus finding an efficient way of computing Jacobians in this setup. We find that JSAEs extract a relatively large degree of computational sparsity while preserving downstream LLM performance approximately as well as traditional SAEs. We also show that Jacobians are a reasonable proxy for computational sparsity because MLPs are approximately linear when rewritten in the JSAE basis. Lastly, we show that JSAEs achieve a greater degree of computational sparsity on pre-trained LLMs than on the equivalent randomized LLM. This shows that the sparsity of the computational graph appears to be a property that LLMs learn through training, and suggests that JSAEs might be more suitable for understanding learned transformer computations than standard SAEs.

Lucy Farnik
Tim Lawson
Conor Houghton
Laurence Aitchison


Disentangling Visual Transformers: Patch-level Interpretability for Image Classification

Abstract: Visual transformers have achieved remarkable performance in image classification tasks, but this performance gain has come at the cost of interpretability. One of the main obstacles to the interpretation of transformers is the self-attention mechanism, which mixes visual information across the whole image in a complex way. In this paper, we propose Hindered Transformer (HiT), a novel interpretable by design architecture inspired by visual transformers. Our proposed architecture rethinks the design of transformers to better disentangle patch influences at the classification stage. Ultimately, HiT can be interpreted as a linear combination of patch-level information. We show that the advantages of our approach in terms of explicability come with a reasonable trade-off in performance, making it an attractive alternative for applications where interpretability is paramount.

Guillaume Jeanneret
Loïc Simon
Frédéric Jurie


ExpertLens: Activation steering features are highly interpretable

Abstract: Activation steering methods in large language models (LLMs) have emerged as an effective way to perform targeted updates to enhance generated language without requiring large amounts of adaptation data. We ask whether the features discovered by activation steering methods are interpretable. We identify neurons responsible for specific concepts (e.g., ``cat'') using the ``finding experts'' method from research on activation steering and show that the ExpertLens, i.e., inspection of these neurons provides insights about model representation. We find that ExpertLens representations are stable across models and datasets and closely align with human representations inferred from behavioral data, matching inter-human alignment levels. ExpertLens significantly outperforms the alignment captured by word/sentence embeddings. By reconstructing human concept organization through ExpertLens, we show that it enables a granular view of LLM concept representation. Our findings suggest that ExpertLens is a flexible and lightweight approach for capturing and analyzing model representations.

Masha Fedzechkina
Eleonora Gualdoni
Sinead Williamson
Katherine Metcalf
Skyler Seto
Barry-John Theobald


Sparse Autoencoder Features for Classifications and Transferability

Abstract: Sparse Autoencoders (SAEs) provide potentials for uncovering structured, human-interpretable representations in Large Language Models (LLMs), making them a crucial tool for transparent and controllable AI systems. We systematically analyze SAE for interpretable feature extraction from LLMs in safety-critical classification tasks. Our framework evaluates (1) model-layer selection and scaling properties, (2) SAE architectural configurations, including width and pooling strategies, and (3) the effect of binarizing continuous SAE activations. SAE-derived features achieve macro F1 > 0.8, outperforming hidden-state and BoW baselines while demonstrating cross-model transfer from Gemma 2 2B to 9B-IT models. These features generalize in a zero-shot manner to cross-lingual toxicity detection and visual classification tasks. Our analysis highlights the significant impact of pooling strategies and binarization thresholds, showing that binarization offers an efficient alternative to traditional feature selection while maintaining or improving performance. These findings establish new best practices for SAE-based interpretability and enable scalable, transparent deployment of LLMs in real-world applications. Full repo: https://github.com/shan23chen/MOSAIC.

Jack Gallifant
Shan Chen
Kuleen Sasse
Hugo Aerts
Thomas Hartvigsen
Danielle S. Bitterman


Towards Mechanistic Interpretability of Graph Transformers via Attention Graphs

Abstract: We introduce Attention Graphs, a new tool for mechanistic interpretability of Graph Neural Networks (GNNs) and Graph Transformers based on the mathematical equivalence between message passing in GNNs and the self-attention mechanism in Transformers. Attention Graphs aggregate attention matrices across Transformer layers and heads to describe how information flows among input nodes. Through experiments on homophilous and heterophilous node classification tasks, we analyze Attention Graphs from a network science perspective and find that: (1) When Graph Transformers are allowed to learn the optimal graph structure using all-to-all attention among input nodes, the Attention Graphs learned by the model do not tend to correlate with the input/original graph structure; and (2) For heterophilous graphs, different Graph Transformer variants can achieve similar performance while utilising distinct information flow patterns. Open source code: https://github.com/batu-el/understanding-inductive-biases-of-gnns

Batu El
Deepro Choudhury
Pietro Liò
Chaitanya K. Joshi


SAIF: A Sparse Autoencoder Framework for Interpreting and Steering Instruction Following of Language Models

Abstract: The ability of large language models (LLMs) to follow instructions is crucial for their practical applications, yet the underlying mechanisms remain poorly understood. This paper presents a novel framework that leverages sparse autoencoders (SAE) to interpret how instruction following works in these models. We demonstrate how the features we identify can effectively steer model outputs to align with given instructions. Through analysis of SAE latent activations, we identify specific latents responsible for instruction following behavior. Our findings reveal that instruction following capabilities are encoded by a distinct set of instruction-relevant SAE latents. These latents both show semantic proximity to relevant instructions and demonstrate causal effects on model behavior. Our research highlights several crucial factors for achieving effective steering performance: precise feature identification, the role of final layer, and optimal instruction positioning. Additionally, we demonstrate that our methodology scales effectively across SAEs and LLMs of varying sizes.

Zirui He
Haiyan Zhao
Yiran Qiao
Fan Yang
Ali Payani
Jing Ma
Mengnan Du


Sparse Shift Autoencoders for Identifying Concepts from Large Language Model Activations

Abstract: Unsupervised approaches to large language model (LLM) interpretability, such as sparse autoencoders (SAEs), offer a way to decode LLM activations into interpretable and, ideally, controllable concepts. On the one hand, these approaches alleviate the need for supervision from concept labels, paired prompts, or explicit causal models. On the other hand, without additional assumptions, SAEs are not guaranteed to be identifiable. In practice, they may learn latent dimensions that entangle multiple underlying concepts. If we use these dimensions to extract vectors for steering specific LLM behaviours, this non-identifiability might result in interventions that inadvertently affect unrelated properties. In this paper, we bring the question of identifiability to the forefront of LLM interpretability research. Specifically, we introduce Sparse Shift Autoencoders (SSAEs) which learn sparse representations of differences between embeddings rather than the embeddings themselves. Crucially, we show that SSAEs are identifiable from paired observations which differ in multiple unknown concepts, but not all. With this key identifiability result, we show that we can steer single concepts with only this weak form of supervision. Finally, we empirically demonstrate identifiable concept recovery across multiple real-world language datasets by disentangling activations from different LLMs.

Shruti Joshi
Andrea Dittadi
Sébastien Lachapelle
Dhanya Sridhar


Generalized Attention Flow: Feature Attribution for Transformer Models via Maximum Flow

Abstract: This paper introduces Generalized Attention Flow (GAF), a novel feature attribution method for Transformer-based models to address the limitations of current approaches. By extending Attention Flow and replacing attention weights with the generalized Information Tensor, GAF integrates attention weights, their gradients, the maximum flow problem, and the barrier method to enhance the performance of feature attributions. The proposed method exhibits key theoretical properties and mitigates the shortcomings of prior techniques that rely solely on simple aggregation of attention weights. Our comprehensive benchmarking on sequence classification tasks demonstrates that a specific variant of GAF consistently outperforms state-of-the-art feature attribution methods in most evaluation settings, providing a more reliable interpretation of Transformer model outputs.


Interpreting and Steering Protein Language Models through Sparse Autoencoders

Abstract: The rapid advancements in transformer-based language models have revolutionized natural language processing, yet understanding the internal mechanisms of these models remains a significant challenge. This paper explores the application of sparse autoencoders (SAE) to interpret the internal representations of protein language models, specifically focusing on the ESM-2 8M parameter model. By performing a statistical analysis on each latent component's relevance to distinct protein annotations, we identify potential interpretations linked to various protein characteristics, including transmembrane regions, binding sites, and specialized motifs. We then leverage these insights to guide sequence generation, shortlisting the relevant latent components that can steer the model towards desired targets such as zinc finger domains. This work contributes to the emerging field of mechanistic interpretability in biological sequence models, offering new perspectives on model steering for sequence design.

Edith Natalia Villegas Garcia
Alessio Ansuini


A Differentiable Rank-Based Objective For Better Feature Learning

Abstract: In this paper, we leverage existing statistical methods to better understand feature learning from data. We tackle this by modifying the model-free variable selection method, Feature Ordering by Conditional Independence (FOCI), which is introduced in \cite{azadkia2021simple}. While FOCI is based on a non-parametric coefficient of conditional dependence, we introduce its parametric, differentiable approximation. With this approximate coefficient of correlation, we present a new algorithm called difFOCI, which is applicable to a wider range of machine learning problems thanks to its differentiable nature and learnable parameters. We present difFOCI in three contexts: (1) as a variable selection method with baseline comparisons to FOCI, (2) as a trainable model parametrized with a neural network, and (3) as a generic, widely applicable neural network regularizer, one that improves feature learning with better management of spurious correlations. We evaluate difFOCI on increasingly complex problems ranging from basic variable selection in toy examples to saliency map comparisons in convolutional networks. We then show how difFOCI can be incorporated in the context of fairness to facilitate classifications without relying on sensitive data.

Krunoslav Lehman Pavasovic
David Lopez-Paz
Giulio Biroli
Levent Sagun


On Mechanistic Circuits for Extractive Question-Answering

Abstract: Large language models are increasingly used to process documents and facilitate question-answering on them. In our paper, we extract mechanistic circuits for this real-world language modeling task: context-augmented language modeling for extractive question-answering (QA) tasks and understand the potential benefits of circuits towards downstream applications such as data attribution to context information. We extract circuits as a function of internal model components (e.g., attention heads, MLPs) using causal mediation analysis techniques. Leveraging the extracted circuits, we first understand the interplay between the model's usage of parametric memory and retrieved context towards a better mechanistic understanding of context-augmented language models. We then identify a small set of attention heads in our circuit which performs reliable data attribution by default, thereby obtaining attribution for free in just the model's forward pass. Using this insight, we then introduce ATTNATTRIB, a fast data attribution algorithm which obtains state-of-the-art attribution results across various extractive QA benchmarks. Finally, we show the possibility to steer the language model towards answering from the context, instead of the parametric memory by using the attribution from ATTNATTRIB as an additional signal during the forward pass. Beyond mechanistic understanding, our paper provides tangible applications of circuits in the form of reliable data attribution and model steering.

Samyadeep Basu
Vlad Morariu
Zichao Wang
Ryan Rossi
Cherry Zhao
Soheil Feizi
Varun Manjunatha


Advancing climate model interpretability: Feature attribution for Arctic melt anomalies

Abstract: The focus of our work is improving the interpretability of anomalies in climate models and advancing our understanding of Arctic melt dynamics. The Arctic and Antarctic ice sheets are experiencing rapid surface melting and increased freshwater runoff, contributing significantly to global sea level rise. Understanding the mechanisms driving snowmelt in these regions is crucial. ERA5, a widely used reanalysis dataset in polar climate studies, offers extensive climate variables and global data assimilation. However, its snowmelt model employs an energy imbalance approach that may oversimplify the complexity of surface melt. In contrast, the Glacier Energy and Mass Balance (GEMB) model incorporates additional physical processes, such as snow accumulation, firn densification, and meltwater percolation/refreezing, providing a more detailed representation of surface melt dynamics. In this research, we focus on analyzing surface snowmelt dynamics of the Greenland Ice Sheet using feature attribution for anomalous melt events in ERA5 and GEMB models. We present a novel unsupervised attribution method leveraging counterfactual explanation method to analyze detected anomalies in ERA5 and GEMB. Our anomaly detection results are validated using MEaSUREs ground-truth data, and the attributions are evaluated against established feature ranking methods, including XGBoost, Shapley values, and Random Forest. Our attribution framework identifies the physics behind each model and the climate features driving melt anomalies. These findings demonstrate the utility of our attribution method in enhancing the interpretability of anomalies in climate models and advancing our understanding of Arctic melt dynamics.

Tolulope Ale
Nicole-Jeanne Schlegel
Vandana P. Janeja


Interpretable and Testable Vision Features via Sparse Autoencoders

Abstract: To truly understand vision models, we must not only interpret their learned features but also validate these interpretations through controlled experiments. While earlier work offers either rich semantics or direct control, few post-hoc tools supply both in a single, model-agnostic procedure. We use sparse autoencoders (SAEs) to bridge this gap; each sparse feature comes with real-image exemplars that reveal its meaning and a decoding vector that can be manipulated to probe its influence on downstream task behavior. By applying our method to widely-used pre-trained vision models, we reveal meaningful differences in the semantic abstractions learned by different pre-training objectives. We then show that a single SAE trained on frozen ViT activations supports patch-level causal edits across tasks (classification and segmentation) all without retraining the ViT or task heads. These qualitative, falsifiable demonstrations position SAEs as a practical bridge between concept discovery and causal probing of vision models. We provide code, demos and models on our project website: https://osu-nlp-group.github.io/saev.

Samuel Stevens
Wei-Lun Chao
Tanya Berger-Wolf
Yu Su


Dictionary Learning: The Complexity of Learning Sparse Superposed Features with Feedback

Abstract: The success of deep networks is crucially attributed to their ability to capture latent features within a representation space. In this work, we investigate whether the underlying learned features of a model can be efficiently retrieved through feedback from an agent, such as a large language model (LLM), in the form of relative \tt{triplet comparisons}. These features may represent various constructs, including dictionaries in LLMs or a covariance matrix of Mahalanobis distances. We analyze the feedback complexity associated with learning a feature matrix in sparse settings. Our results establish tight bounds when the agent is permitted to construct activations and demonstrate strong upper bounds in sparse scenarios when the agent's feedback is limited to distributional information. We validate our theoretical findings through experiments on two distinct applications: feature recovery from Recursive Feature Machines and dictionary extraction from sparse autoencoders trained on Large Language Models.


Universal Sparse Autoencoders: Interpretable Cross-Model Concept Alignment

Abstract: We present Universal Sparse Autoencoders (USAEs), a framework for uncovering and aligning interpretable concepts spanning multiple pretrained deep neural networks. Unlike existing concept-based interpretability methods, which focus on a single model, USAEs jointly learn a universal concept space that can reconstruct and interpret the internal activations of multiple models at once. Our core insight is to train a single, overcomplete sparse autoencoder (SAE) that ingests activations from any model and decodes them to approximate the activations of any other model under consideration. By optimizing a shared objective, the learned dictionary captures common factors of variation-concepts-across different tasks, architectures, and datasets. We show that USAEs discover semantically coherent and important universal concepts across vision models; ranging from low-level features (e.g., colors and textures) to higher-level structures (e.g., parts and objects). Overall, USAEs provide a powerful new method for interpretable cross-model analysis and offers novel applications, such as coordinated activation maximization, that open avenues for deeper insights in multi-model AI systems

Harrish Thasarathan
Julian Forsyth
Thomas Fel
Matthew Kowal
Konstantinos G. Derpanis


Analyze Feature Flow to Enhance Interpretation and Steering in Language Models

Abstract: We introduce a new approach to systematically map features discovered by sparse autoencoder across consecutive layers of large language models, extending earlier work that examined inter-layer feature links. By using a data-free cosine similarity technique, we trace how specific features persist, transform, or first appear at each stage. This method yields granular flow graphs of feature evolution, enabling fine-grained interpretability and mechanistic insights into model computations. Crucially, we demonstrate how these cross-layer feature maps facilitate direct steering of model behavior by amplifying or suppressing chosen features, achieving targeted thematic control in text generation. Together, our findings highlight the utility of a causal, cross-layer interpretability framework that not only clarifies how features develop through forward passes but also provides new means for transparent manipulation of large language models.

Daniil Laptev
Nikita Balagansky
Yaroslav Aksenov
Daniil Gavrilov


Towards Unified Attribution in Explainable AI, Data-Centric AI, and Mechanistic Interpretability

Abstract: The increasing complexity of AI systems has made understanding their behavior critical. Numerous interpretability methods have been developed to attribute model behavior to three key aspects: input features, training data, and internal model components, which emerged from explainable AI, data-centric AI, and mechanistic interpretability, respectively. However, these attribution methods are studied and applied rather independently, resulting in a fragmented landscape of methods and terminology. This position paper argues that feature, data, and component attribution methods share fundamental similarities, and a unified view of them benefits both interpretability and broader AI research. To this end, we first analyze popular methods for these three types of attributions and present a unified view demonstrating that these seemingly distinct methods employ similar techniques (such as perturbations, gradients, and linear approximations) over different aspects and thus differ primarily in their perspectives rather than techniques. Then, we demonstrate how this unified view enhances understanding of existing attribution methods, highlights shared concepts and evaluation criteria among these methods, and leads to new research directions both in interpretability research, by addressing common challenges and facilitating cross-attribution innovation, and in AI more broadly, with applications in model editing, steering, and regulation.

Shichang Zhang
Tessa Han
Usha Bhalla
Himabindu Lakkaraju


Transcoders Beat Sparse Autoencoders for Interpretability

Abstract: Sparse autoencoders (SAEs) extract human-interpretable features from deep neural networks by transforming their activations into a sparse, higher dimensional latent space, and then reconstructing the activations from these latents. Transcoders are similar to SAEs, but they are trained to reconstruct the output of a component of a deep network given its input. In this work, we compare the features found by transcoders and SAEs trained on the same model and data, finding that transcoder features are significantly more interpretable. We also propose skip transcoders, which add an affine skip connection to the transcoder architecture, and show that these achieve lower reconstruction loss with no effect on interpretability.

Gonçalo Paulo
Stepan Shabalin
Nora Belrose


Sparse Autoencoder Insights on Voice Embeddings

Abstract: Recent advances in explainable machine learning have highlighted the potential of sparse autoencoders in uncovering mono-semantic features in densely encoded embeddings. While most research has focused on Large Language Model (LLM) embeddings, the applicability of this technique to other domains remains largely unexplored. This study applies sparse autoencoders to speaker embeddings generated from a Titanet model, demonstrating the effectiveness of this technique in extracting mono-semantic features from non-textual embedded data. The results show that the extracted features exhibit characteristics similar to those found in LLM embeddings, including feature splitting and steering. The analysis reveals that the autoencoder can identify and manipulate features such as language and music, which are not evident in the original embedding. The findings suggest that sparse autoencoders can be a valuable tool for understanding and interpreting embedded data in many domains, including audio-based speaker recognition.


SAeUron: Interpretable Concept Unlearning in Diffusion Models with Sparse Autoencoders

Abstract: Diffusion models, while powerful, can inadvertently generate harmful or undesirable content, raising significant ethical and safety concerns. Recent machine unlearning approaches offer potential solutions but often lack transparency, making it difficult to understand the changes they introduce to the base model. In this work, we introduce SAeUron, a novel method leveraging features learned by sparse autoencoders (SAEs) to remove unwanted concepts in text-to-image diffusion models. First, we demonstrate that SAEs, trained in an unsupervised manner on activations from multiple denoising timesteps of the diffusion model, capture sparse and interpretable features corresponding to specific concepts. Building on this, we propose a feature selection method that enables precise interventions on model activations to block targeted content while preserving overall performance. Our evaluation shows that SAeUron outperforms existing approaches on the UnlearnCanvas benchmark for concepts and style unlearning, and effectively eliminates nudity when evaluated with I2P. Moreover, we show that with a single SAE, we can remove multiple concepts simultaneously and that in contrast to other methods, SAeUron mitigates the possibility of generating unwanted content under adversarial attack. Code and checkpoints are available at https://github.com/cywinski/SAeUron.


Sparse Autoencoders Trained on the Same Data Learn Different Features

Abstract: Sparse autoencoders (SAEs) are a useful tool for uncovering human-interpretable features in the activations of large language models (LLMs). While some expect SAEs to find the true underlying features used by a model, our research shows that SAEs trained on the same model and data, differing only in the random seed used to initialize their weights, identify different sets of features. For example, in an SAE with 131K latents trained on a feedforward network in Llama 3 8B, only 30% of the features were shared across different seeds. We observed this phenomenon across multiple layers of three different LLMs, two datasets, and several SAE architectures. While ReLU SAEs trained with the L1 sparsity loss showed greater stability across seeds, SAEs using the state-of-the-art TopK activation function were more seed-dependent, even when controlling for the level of sparsity. Our results suggest that the set of features uncovered by an SAE should be viewed as a pragmatically useful decomposition of activation space, rather than an exhaustive and universal list of features "truly used" by the model.


Open Problems in Mechanistic Interpretability

Abstract: Mechanistic interpretability aims to understand the computational mechanisms underlying neural networks' capabilities in order to accomplish concrete scientific and engineering goals. Progress in this field thus promises to provide greater assurance over AI system behavior and shed light on exciting scientific questions about the nature of intelligence. Despite recent progress toward these goals, there are many open problems in the field that require solutions before many scientific and practical benefits can be realized: Our methods require both conceptual and practical improvements to reveal deeper insights; we must figure out how best to apply our methods in pursuit of specific goals; and the field must grapple with socio-technical challenges that influence and are influenced by our work. This forward-facing review discusses the current frontier of mechanistic interpretability and the open problems that the field may benefit from prioritizing.

Lee Sharkey
Bilal Chughtai
Joshua Batson
Jack Lindsey
Jeff Wu
Lucius Bushnaq
Nicholas Goldowsky-Dill
Stefan Heimersheim
Alejandro Ortega
Joseph Bloom
Stella Biderman
Adria Garriga-Alonso
Arthur Conmy
Neel Nanda
Jessica Rumbelow
Martin Wattenberg
Nandi Schoots
Joseph Miller
Eric J. Michaud
Stephen Casper
Max Tegmark
William Saunders
David Bau
Eric Todd
Atticus Geiger
Mor Geva
Jesse Hoogland
Daniel Murfet
Tom McGrath


Interpretability in Parameter Space: Minimizing Mechanistic Description Length with Attribution-based Parameter Decomposition

Abstract: Mechanistic interpretability aims to understand the internal mechanisms learned by neural networks. Despite recent progress toward this goal, it remains unclear how best to decompose neural network parameters into mechanistic components. We introduce Attribution-based Parameter Decomposition (APD), a method that directly decomposes a neural network's parameters into components that (i) are faithful to the parameters of the original network, (ii) require a minimal number of components to process any input, and (iii) are maximally simple. Our approach thus optimizes for a minimal length description of the network's mechanisms. We demonstrate APD's effectiveness by successfully identifying ground truth mechanisms in multiple toy experimental settings: Recovering features from superposition; separating compressed computations; and identifying cross-layer distributed representations. While challenges remain to scaling APD to non-toy models, our results suggest solutions to several open problems in mechanistic interpretability, including identifying minimal circuits in superposition, offering a conceptual foundation for 'features', and providing an architecture-agnostic framework for neural network decomposition.

Dan Braun
Lucius Bushnaq
Stefan Heimersheim
Jake Mendel
Lee Sharkey


LF-Steering: Latent Feature Activation Steering for Enhancing Semantic Consistency in Large Language Models

Abstract: Large Language Models (LLMs) often generate inconsistent responses when prompted with semantically equivalent paraphrased inputs. Recently, activation steering, a technique that modulates LLMs' behaviours by adjusting their latent representations during inference time, has been explored to improve the semantic consistency of LLMs. However, these methods typically operate at the model component level, such as layer hidden states or attention head outputs. They face a challenge due to the ``polysemanticity issue'', where the model components of LLMs typically encode multiple entangled features, making precise steering difficult. To address this challenge, we drill down to feature-level representations and propose LF-Steering, a novel activation steering approach to precisely identify latent feature representations responsible for semantic inconsistency. More specifically, our method maps the hidden states of the relevant transformer layer into a sparsely activated, high-dimensional feature space based on a sparse autoencoder (SAE), ensuring model steering based on decoupled feature representations with minimal interference. Comprehensive experiments on NLU and NLG datasets demonstrate the effectiveness of our method in enhancing semantic consistency, resulting in significant performance gains for various NLU and NLG tasks.

Jingyuan Yang
Rongjun Li
Weixuan Wang
Ziyu Zhou
Zhiyong Feng
Wei Peng


Model Monitoring in the Absence of Labeled Data via Feature Attributions Distributions

Abstract: Model monitoring involves analyzing AI algorithms once they have been deployed and detecting changes in their behaviour. This thesis explores machine learning model monitoring ML before the predictions impact real-world decisions or users. This step is characterized by one particular condition: the absence of labelled data at test time, which makes it challenging, even often impossible, to calculate performance metrics. The thesis is structured around two main themes: (i) AI alignment, measuring if AI models behave in a manner consistent with human values and (ii) performance monitoring, measuring if the models achieve specific accuracy goals or desires. The thesis uses a common methodology that unifies all its sections. It explores feature attribution distributions for both monitoring dimensions. Using these feature attribution explanations, we can exploit their theoretical properties to derive and establish certain guarantees and insights into model monitoring.


Interpretable Steering of Large Language Models with Feature Guided Activation Additions

Abstract: Effective and reliable control over large language model (LLM) behavior is a significant challenge. While activation steering methods, which add steering vectors to a model's hidden states, are a promising approach, existing techniques often lack precision and interpretability in how they influence model outputs. We introduce Feature Guided Activation Additions (FGAA), a novel activation steering method that leverages insights from Contrastive Activation Addition (CAA) and Sparse Autoencoder-Targeted Steering (SAE-TS). By operating in the latent space of a Sparse Autoencoder (SAE) and employing optimization techniques to select desired SAE features, FGAA constructs precise steering vectors that provide better steering effects while maintaining coherence of steered model outputs. In this regard, evaluations on Gemma-2-2B and Gemma-2-9B models across various steering tasks demonstrate that FGAA outperforms existing steering methods of CAA, SAE decoder steering, and SAE-TS. Our results also highlight important trade-offs between steering scale and general model capabilities that are consistent across all tested steering methods.

Samuel Soo
Chen Guang
Wesley Teng
Chandrasekaran Balaganesh
Tan Guoxian
Yan Ming


MechIR: A Mechanistic Interpretability Framework for Information Retrieval

Abstract: Mechanistic interpretability is an emerging diagnostic approach for neural models that has gained traction in broader natural language processing domains. This paradigm aims to provide attribution to components of neural systems where causal relationships between hidden layers and output were previously uninterpretable. As the use of neural models in IR for retrieval and evaluation becomes ubiquitous, we need to ensure that we can interpret why a model produces a given output for both transparency and the betterment of systems. This work comprises a flexible framework for diagnostic analysis and intervention within these highly parametric neural systems specifically tailored for IR tasks and architectures. In providing such a framework, we look to facilitate further research in interpretable IR with a broader scope for practical interventions derived from mechanistic interpretability. We provide preliminary analysis and look to demonstrate our framework through an axiomatic lens to show its applications and ease of use for those IR practitioners inexperienced in this emerging paradigm.

Andrew Parry
Catherine Chen
Carsten Eickhoff
Sean MacAvaney

European Conference on Information Retrieval


Enhancing Automated Interpretability with Output-Centric Feature Descriptions

Abstract: Automated interpretability pipelines generate natural language descriptions for the concepts represented by features in large language models (LLMs), such as plants or the first word in a sentence. These descriptions are derived using inputs that activate the feature, which may be a dimension or a direction in the model's representation space. However, identifying activating inputs is costly, and the mechanistic role of a feature in model behavior is determined both by how inputs cause a feature to activate and by how feature activation affects outputs. Using steering evaluations, we reveal that current pipelines provide descriptions that fail to capture the causal effect of the feature on outputs. To fix this, we propose efficient, output-centric methods for automatically generating feature descriptions. These methods use the tokens weighted higher after feature stimulation or the highest weight tokens after applying the vocabulary "unembedding" head directly to the feature. Our output-centric descriptions better capture the causal effect of a feature on model outputs than input-centric descriptions, but combining the two leads to the best performance on both input and output evaluations. Lastly, we show that output-centric descriptions can be used to find inputs that activate features previously thought to be "dead".

Yoav Gur-Arieh
Roy Mayan
Chen Agassy
Atticus Geiger
Mor Geva


Rethinking Evaluation of Sparse Autoencoders through the Representation of Polysemous Words

Abstract: Sparse autoencoders (SAEs) have gained a lot of attention as a promising tool to improve the interpretability of large language models (LLMs) by mapping the complex superposition of polysemantic neurons into monosemantic features and composing a sparse dictionary of words. However, traditional performance metrics like Mean Squared Error and L0 sparsity ignore the evaluation of the semantic representational power of SAEs -- whether they can acquire interpretable monosemantic features while preserving the semantic relationship of words. For instance, it is not obvious whether a learned sparse feature could distinguish different meanings in one word. In this paper, we propose a suite of evaluations for SAEs to analyze the quality of monosemantic features by focusing on polysemous words. Our findings reveal that SAEs developed to improve the MSE-L0 Pareto frontier may confuse interpretability, which does not necessarily enhance the extraction of monosemantic features. The analysis of SAEs with polysemous words can also figure out the internal mechanism of LLMs; deeper layers and the Attention module contribute to distinguishing polysemy in a word. Our semantics focused evaluation offers new insights into the polysemy and the existing SAE objective and contributes to the development of more practical SAEs.

Gouki Minegishi
Hiroki Furuta
Yusuke Iwasawa
Yutaka Matsuo


Slim multi-scale convolutional autoencoder-based reduced-order models for interpretable features of a complex dynamical system

Abstract: In recent years, data-driven deep learning models have gained significant interest in the analysis of turbulent dynamical systems. Within the context of reduced-order models (ROMs), convolutional autoencoders (CAEs) pose a universally applicable alternative to conventional approaches. They can learn nonlinear transformations directly from data, without prior knowledge of the system. However, the features generated by such models lack interpretability. Thus, the resulting model is a black-box which effectively reduces the complexity of the system, but does not provide insights into the meaning of the latent features. To address this critical issue, we introduce a novel interpretable CAE approach for high-dimensional fluid flow data that maintains the reconstruction quality of conventional CAEs and allows for feature interpretation. Our method can be easily integrated into any existing CAE architecture with minor modifications of the training process. We compare our approach to Proper Orthogonal Decomposition (POD) and two existing methods for interpretable CAEs. We apply all methods to three different experimental turbulent Rayleigh-Bénard convection datasets with varying complexity. Our results show that the proposed method is lightweight, easy to train, and achieves relative reconstruction performance improvements of up to 6.4% over POD for 64 modes. The relative improvement increases to up to 229.8% as the number of modes decreases. Additionally, our method delivers interpretable features similar to those of POD and is significantly less resource-intensive than existing CAE approaches, using less than 2% of the parameters. These approaches either trade interpretability for reconstruction performance or only provide interpretability to a limited extend.

Philipp Teutsch
Philipp Pfeffer
Mohammad Sharifi Ghazijahani
Christian Cierpka
Jörg Schumacher
Patrick Mäder


Flash Interpretability: Decoding Specialised Feature Neurons in Large Language Models with the LM-Head

Abstract: Large Language Models (LLMs) typically have billions of parameters and are thus often difficult to interpret in their operation. In this work, we demonstrate that it is possible to decode neuron weights directly into token probabilities through the final projection layer of the model (the LM-head). This is illustrated in Llama 3.1 8B where we use the LM-head to find examples of specialised feature neurons such as a "dog" neuron and a "California" neuron, and we validate this by clamping these neurons to affect the probability of the concept in the output. We evaluate this method on both the pre-trained and Instruct models, finding that over 75% of neurons in the up-projection layers in the instruct model have the same top associated token compared to the pretrained model. Finally, we demonstrate that clamping the "dog" neuron leads the instruct model to always discuss dogs when asked about its favourite animal. Through our method, it is possible to map the top features of the entirety of Llama 3.1 8B's up-projection neurons in less than 10 seconds, with minimal compute.


When is the Computation of a Feature Attribution Method Tractable?

Abstract: Feature attribution methods have become essential for explaining machine learning models. Many popular approaches, such as SHAP and Banzhaf values, are grounded in power indices from cooperative game theory, which measure the contribution of features to model predictions. This work studies the computational complexity of power indices beyond SHAP, addressing the conditions under which they can be computed efficiently. We identify a simple condition on power indices that ensures that computation is polynomially equivalent to evaluating expected values, extending known results for SHAP. We also introduce Bernoulli power indices, showing that their computation can be simplified to a constant number of expected value evaluations. Furthermore, we explore interaction power indices that quantify the importance of feature subsets, proving that their computation complexity mirrors that of individual features.


Insights on Galaxy Evolution from Interpretable Sparse Feature Networks

Abstract: Galaxy appearances reveal the physics of how they formed and evolved. Machine learning models can now exploit galaxies' information-rich morphologies to predict physical properties directly from image cutouts. Learning the relationship between pixel-level features and galaxy properties is essential for building a physical understanding of galaxy evolution, but we are still unable to explicate the details of how deep neural networks represent image features. To address this lack of interpretability, we present a novel neural network architecture called a Sparse Feature Network (SFNet). SFNets produce interpretable features that can be linearly combined in order to estimate galaxy properties like optical emission line ratios or gas-phase metallicity. We find that SFNets do not sacrifice accuracy in order to gain interpretability, and that they perform comparably well to cutting-edge models on astronomical machine learning tasks. Our novel approach is valuable for finding physical patterns in large datasets and helping astronomers interpret machine learning results.


Tracking the Feature Dynamics in LLM Training: A Mechanistic Study

Abstract: Understanding training dynamics and feature evolution is crucial for the mechanistic interpretability of large language models (LLMs). Although sparse autoencoders (SAEs) have been used to identify features within LLMs, a clear picture of how these features evolve during training remains elusive. In this study, we (1) introduce SAE-Track, a novel method for efficiently obtaining a continual series of SAEs, providing the foundation for a mechanistic study that covers (2) the semantic evolution of features, (3) the underlying processes of feature formation, and (4) the directional drift of feature vectors. Our work provides new insights into the dynamics of features in LLMs, enhancing our understanding of training mechanisms and feature evolution. For reproducibility, our code is available at https://github.com/Superposition09m/SAE-Track.


Towards scientific discovery with dictionary learning: Extracting biological concepts from microscopy foundation models

Abstract: Sparse dictionary learning (DL) has emerged as a powerful approach to extract semantically meaningful concepts from the internals of large language models (LLMs) trained mainly in the text domain. In this work, we explore whether DL can extract meaningful concepts from less human-interpretable scientific data, such as vision foundation models trained on cell microscopy images, where limited prior knowledge exists about which high-level concepts should arise. We propose a novel combination of a sparse DL algorithm, Iterative Codebook Feature Learning (ICFL), with a PCA whitening pre-processing step derived from control data. Using this combined approach, we successfully retrieve biologically meaningful concepts, such as cell types and genetic perturbations. Moreover, we demonstrate how our method reveals subtle morphological changes arising from human-interpretable interventions, offering a promising new direction for scientific discovery via mechanistic interpretability in bioimaging.

Konstantin Donhauser
Kristina Ulicna
Gemma Elyse Moran
Aditya Ravuri
Kian Kenyon-Dean
Cian Eastwood
Jason Hartford


Rethinking Associative Memory Mechanism in Induction Head

Abstract: Induction head mechanism is a part of the computational circuits for in-context learning (ICL) that enable large language models (LLMs) to adapt to new tasks without fine-tuning. Most existing work explains the training dynamics behind acquiring such a powerful mechanism. However, the model's ability to coordinate in-context information over long contexts and global knowledge acquired during pretraining remains poorly understood. This paper investigates how a two-layer transformer thoroughly captures in-context information and balances it with pretrained bigram knowledge in next token prediction, from the viewpoint of associative memory. We theoretically analyze the representation of weight matrices in attention layers and the resulting logits when a transformer is given prompts generated by a bigram model. In the experiments, we design specific prompts to evaluate whether the outputs of the trained transformer align with the theoretical results.


Biological and Radiological Dictionary of Radiomics Features: Addressing Understandable AI Issues in Personalized Prostate Cancer; Dictionary Version PM1.0

Abstract: We investigate the connection between visual semantic features defined in PI-RADS and associated risk factors, moving beyond abnormal imaging findings, establishing a shared framework between medical and AI professionals by creating a standardized dictionary of biological/radiological RFs. Subsequently, 6 interpretable and seven complex classifiers, linked with nine interpretable feature selection algorithms (FSA) applied to risk factors, were extracted from segmented lesions in T2-weighted imaging (T2WI), diffusion-weighted imaging (DWI), and apparent diffusion coefficient (ADC) multiparametric-prostate MRI sequences to predict the UCLA scores. We then utilized the created dictionary to interpret the best-predictive models. Combining T2WI, DWI, and ADC with FSAs including ANOVA F-test, Correlation Coefficient, and Fisher Score, and utilizing logistic regression, identified key features: The 90th percentile from T2WI, which captures hypo-intensity related to prostate cancer risk; Variance from T2WI, indicating lesion heterogeneity; shape metrics including Least Axis Length and Surface Area to Volume ratio from ADC, describing lesion shape and compactness; and Run Entropy from ADC, reflecting texture consistency. This approach achieved the highest average accuracy of 0.78, significantly outperforming single-sequence methods (p-value<0.05). The developed dictionary for Prostate-MRI (PM1.0) serves as a common language, fosters collaboration between clinical professionals and AI developers to advance trustworthy AI solutions that support reliable/interpretable clinical decisions.

Mohammad R. Salmanpour
Sajad Amiri
Sara Gharibi
Ahmad Shariftabrizi
Yixi Xu
William B Weeks
Arman Rahmim
Ilker Hacihaliloglu


Sparse autoencoders reveal selective remapping of visual concepts during adaptation

Abstract: Adapting foundation models for specific purposes has become a standard approach to build machine learning systems for downstream applications. Yet, it is an open question which mechanisms take place during adaptation. Here we develop a new Sparse Autoencoder (SAE) for the CLIP vision transformer, named PatchSAE, to extract interpretable concepts at granular levels (e.g., shape, color, or semantics of an object) and their patch-wise spatial attributions. We explore how these concepts influence the model output in downstream image classification tasks and investigate how recent state-of-the-art prompt-based adaptation techniques change the association of model inputs to these concepts. While activations of concepts slightly change between adapted and non-adapted models, we find that the majority of gains on common adaptation tasks can be explained with the existing concepts already present in the non-adapted foundation model. This work provides a concrete framework to train and use SAEs for Vision Transformers and provides insights into explaining adaptation mechanisms.

Hyesu Lim
Jinho Choi
Jaegul Choo
Steffen Schneider


Superposition through Active Learning lens

Abstract: Superposition or Neuron Polysemanticity are important concepts in the field of interpretability and one might say they are these most intricately beautiful blockers in our path of decoding the Machine Learning black-box. The idea behind this paper is to examine whether it is possible to decode Superposition using Active Learning methods. While it seems that Superposition is an attempt to arrange more features in smaller space to better utilize the limited resources, it might be worth inspecting if Superposition is dependent on any other factors. This paper uses CIFAR-10 and Tiny ImageNet image datasets and the ResNet18 model and compares Baseline and Active Learning models and the presence of Superposition in them is inspected across multiple criteria, including t-SNE visualizations, cosine similarity histograms, Silhouette Scores, and Davies-Bouldin Indexes. Contrary to our expectations, the active learning model did not significantly outperform the baseline in terms of feature separation and overall accuracy. This suggests that non-informative sample selection and potential overfitting to uncertain samples may have hindered the active learning model's ability to generalize better suggesting more sophisticated approaches might be needed to decode superposition and potentially reduce it.


Interpretable Company Similarity with Sparse Autoencoders

Abstract: Determining company similarity is a vital task in finance, underpinning risk management, hedging, and portfolio diversification. Practitioners often rely on sector and industry classifications such as SIC and GICS codes to gauge similarity, the former being used by the U.S. Securities and Exchange Commission (SEC), and the latter widely used by the investment community. Since these classifications lack granularity and need regular updating, using clusters of embeddings of company descriptions has been proposed as a potential alternative, but the lack of interpretability in token embeddings poses a significant barrier to adoption in high-stakes contexts. Sparse Autoencoders (SAEs) have shown promise in enhancing the interpretability of Large Language Models (LLMs) by decomposing Large Language Model (LLM) activations into interpretable features. Moreover, SAEs capture an LLM's internal representation of a company description, as opposed to semantic similarity alone, as is the case with embeddings. We apply SAEs to company descriptions, and obtain meaningful clusters of equities. We benchmark SAE features against SIC-codes, Industry codes, and Embeddings. Our results demonstrate that SAE features surpass sector classifications and embeddings in capturing fundamental company characteristics. This is evidenced by their superior performance in correlating logged monthly returns - a proxy for similarity - and generating higher Sharpe ratios in co-integration trading strategies, which underscores deeper fundamental similarities among companies. Finally, we verify the interpretability of our clusters, and demonstrate that sparse features form simple and interpretable explanations for our clusters.

Sebastian Kuznetsov Ryder Torres Pereira