initial commit

.devcontainer/devcontainer.json

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+// For format details, see https://aka.ms/devcontainer.json. For config options, see the
+// README at: https://github.com/devcontainers/templates/tree/main/src/python
+{
+	"name": "ges",
+	// Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile
+	"image": "mcr.microsoft.com/devcontainers/python:0-3.10",
+	"features": {
+		"ghcr.io/devcontainers/features/git-lfs:1": {}
+	},
+
+	// Features to add to the dev container. More info: https://containers.dev/features.
+	// "features": {},
+
+	// Use 'forwardPorts' to make a list of ports inside the container available locally.
+	// "forwardPorts": [],
+
+	// Use 'postCreateCommand' to run commands after the container is created.
+	"onCreateCommand": "pip install -r requirements.txt"
+
+	// Configure tool-specific properties.
+	// "customizations": {},
+
+	// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
+	// "remoteUser": "root"
+}

.gitattributes

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+*.safetensors filter=lfs diff=lfs merge=lfs -text
+saved_model/**/* filter=lfs diff=lfs merge=lfs -text
+*.tar.* filter=lfs diff=lfs merge=lfs -text
+*.tar filter=lfs diff=lfs merge=lfs -text
+*.tflite filter=lfs diff=lfs merge=lfs -text
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+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text
+*tfevents* filter=lfs diff=lfs merge=lfs -text
+# Audio files - uncompressed
+*.pcm filter=lfs diff=lfs merge=lfs -text
+*.sam filter=lfs diff=lfs merge=lfs -text
+*.raw filter=lfs diff=lfs merge=lfs -text
+# Audio files - compressed
+*.aac filter=lfs diff=lfs merge=lfs -text
+*.flac filter=lfs diff=lfs merge=lfs -text
+*.mp3 filter=lfs diff=lfs merge=lfs -text
+*.ogg filter=lfs diff=lfs merge=lfs -text
+*.wav filter=lfs diff=lfs merge=lfs -text
+# Image files - uncompressed
+*.bmp filter=lfs diff=lfs merge=lfs -text
+*.gif filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text
+*.tiff filter=lfs diff=lfs merge=lfs -text
+# Image files - compressed
+*.jpg filter=lfs diff=lfs merge=lfs -text
+*.jpeg filter=lfs diff=lfs merge=lfs -text
+*.webp filter=lfs diff=lfs merge=lfs -text

create_dataset.py

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+#!/usr/local/bin/python
+
+from pathlib import Path
+import polars as pl
+from sklearn.model_selection import train_test_split
+import argparse
+
+parser = argparse.ArgumentParser(description="Create dataset")
+parser.add_argument("dataset", type=Path, help="dataset file name")
+args = parser.parse_args()
+filepath = args.dataset
+
+data = pl.read_csv(
+    filepath,
+    use_pyarrow=True,
+    columns=["INGRESO", "FECHANACIMIENTO", "SOSPECHA_DIAGNOSTICA", "GES"],
+)
+
+data = data.with_columns(
+    age=((data["INGRESO"] - data["FECHANACIMIENTO"]).dt.days() / 365.25).cast(pl.Int16)
+)
+data = data.filter(pl.col("age") > 0)
+data = data.with_columns(
+    GES=data["GES"].cast(pl.Boolean),
+)
+data = data.drop(["INGRESO", "FECHANACIMIENTO"])
+data = data.with_columns(
+    pl.struct(["age", "SOSPECHA_DIAGNOSTICA"])
+    .apply(lambda x: f"Paciente de {x['age']} años. {x['SOSPECHA_DIAGNOSTICA']}")
+    .alias("text")
+).drop(["age", "SOSPECHA_DIAGNOSTICA"])
+data = data.rename({"GES": "label"})
+
+X_train, X_test, y_train, y_test = train_test_split(
+    data["text"], data["label"], test_size=0.3, random_state=11, stratify=data["label"]
+)
+X_test, X_validation, y_test, y_validation = train_test_split(
+    X_test, y_test, test_size=1 / 3, random_state=11, stratify=y_test
+)
+
+train = pl.DataFrame([X_train, y_train])
+test = pl.DataFrame([X_test, y_test])
+validation = pl.DataFrame([X_validation, y_validation])
+
+train.write_parquet("train.parquet")
+test.write_parquet("test.parquet")
+validation.write_parquet("validation.parquet")

requirements.txt

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+datasets
+scikit-learn
+polars

test.parquet

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+version https://git-lfs.github.com/spec/v1
+oid sha256:33920db76180ed894c65f3280a06ab26e74a61f69f9bcb85ae695b1c005709c4
+size 7361210

train.parquet

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+version https://git-lfs.github.com/spec/v1
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+size 25741084

validation.parquet

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+version https://git-lfs.github.com/spec/v1
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