| id,split,setting,organ,disease_state,tissue,oncotree_code,preservation_method,n_panel_genes,pixel_size_um,wsi_width,wsi_height,n_tiles,n_cells,dataset_title,study_link,source_link,license |
| TENX111,train,,Bowel,Cancer,Colon,COAD,FFPE,445,0.2738047666871285,26909,43090,13816,586906,Human Colon Preview Data (Xenium Human Colon Gene Expression Panel),,https://www.10xgenomics.com/datasets/human-colon-preview-data-xenium-human-colon-gene-expression-panel-1-standard,Creative Commons Attribution |
| TENX114,train,,Bowel,Healthy,Colon,,FFPE,345,0.136882136182124,53802,77802,37902,270788,Human Colon Preview Data (Xenium Human Colon Gene Expression Panel),,https://www.10xgenomics.com/datasets/human-colon-preview-data-xenium-human-colon-gene-expression-panel-1-standard,Creative Commons Attribution |
| TENX139,train,,Bowel,Cancer,Bowel,COADREAD,FFPE,500,0.2737406177714192,21507,40815,8858,388015,FFPE Human Colorectal Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on,,https://www.10xgenomics.com/datasets/ffpe-human-colorectal-cancer-data-with-human-immuno-oncology-profiling-panel-and-custom-add-on-1-standard,Creative Commons Attribution |
| TENX147,train,,Bowel,Cancer,Colon,COAD,FFPE,499,0.2497022099084696,71082,66226,9997,275875,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling,https://www.biorxiv.org/content/10.1101/2024.06.04.597233v1.full,https://www.10xgenomics.com/products/visium-hd-spatial-gene-expression/dataset-human-crc,Creative Commons Attribution |
| NCBI783,train,,Breast,Cancer,Breast,IDC,FFPE,308,0.2739598559774087,21227,31943,8177,141829,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [Xenium]",https://www.nature.com/articles/s41467-023-43458-x, ,see source (NCBI GEO) |
| TENX96,train,,Breast,Cancer,Breast,ILC,FFPE,400,0.2125,45749,41411,24657,365592,FFPE Human Breast with Custom Add-on Panel,,https://www.10xgenomics.com/datasets/ffpe-human-breast-with-custom-add-on-panel-1-standard,Creative Commons Attribution |
| TENX97,train,,Breast,Cancer,Breast,IDC,FFPE,400,0.2125,48441,53833,33795,574426,FFPE Human Breast with Custom Add-on Panel,,https://www.10xgenomics.com/datasets/ffpe-human-breast-with-custom-add-on-panel-1-standard,Creative Commons Attribution |
| TENX98,train,,Breast,Cancer,Breast,IDC,FFPE,300,0.2125,51458,111225,85887,882692,FFPE Human Breast using the Entire Sample Area,,https://www.10xgenomics.com/datasets/ffpe-human-breast-using-the-entire-sample-area-1-standard,Creative Commons Attribution |
| TENX105,train,,Kidney,Cancer,Kidney,PRCC,FFPE,397,0.2737098867519676,8832,27323,3461,56499,Human Kidney Preview Data (Xenium Human Multi-Tissue and Cancer Panel),,https://www.10xgenomics.com/datasets/human-kidney-preview-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| TENX121,train,,Liver,Healthy,Liver,,FFPE,499,0.2737968482419441,28183,42353,15332,239194,Human Liver Data with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| NCBI856,train,,Lung,Diseased,Lung,,FFPE,498,0.2125,17136,24809,4134,46253,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI857,train,,Lung,Diseased,Lung,,FFPE,499,0.2125,19964,24815,5018,59609,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI858,train,,Lung,Diseased,Lung,,FFPE,486,0.2125,14306,12484,2594,16301,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI859,train,,Lung,Diseased,Lung,,FFPE,489,0.2125,17140,16592,3193,26389,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI860,train,,Lung,Diseased,Lung,,FFPE,474,0.2125,19969,16597,2811,34807,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI861,train,,Lung,Diseased,Lung,,FFPE,460,0.2125,17137,16596,3083,45375,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI864,train,,Lung,Diseased,Lung,,FFPE,498,0.2125,25624,33047,8581,107962,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI865,train,,Lung,Diseased,Lung,,FFPE,500,0.2125,28454,28935,9568,133193,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI866,train,,Lung,Diseased,Lung,,FFPE,498,0.2125,19966,20710,4950,72153,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI867,train,,Lung,Diseased,Lung,,FFPE,500,0.2125,28462,33048,10983,140660,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI870,train,,Lung,Diseased,Lung,,FFPE,479,0.2125,17135,16593,2342,24643,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI873,train,,Lung,Diseased,Lung,,FFPE,492,0.2125,17134,20714,3597,27971,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI875,train,,Lung,Healthy,Lung,,FFPE,474,0.2125,17132,12491,2365,31089,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI876,train,,Lung,Healthy,Lung,,FFPE,459,0.2125,14301,16598,1421,12915,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI880,train,,Lung,Diseased,Lung,,FFPE,495,0.2125,17141,16594,3242,38284,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI881,train,,Lung,Diseased,Lung,,FFPE,493,0.2125,19973,16596,3488,40775,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI882,train,,Lung,Diseased,Lung,,FFPE,499,0.2125,17141,20708,4417,52158,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| NCBI884,train,,Lung,Healthy,Lung,,FFPE,499,0.2125,25630,28964,5151,73781,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| TENX141,train,,Lung,Cancer,Lung,LUAD,FFPE,500,0.2736430867919545,15513,39361,8073,160442,FFPE Human Lung Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on,,https://www.10xgenomics.com/datasets/ffpe-human-lung-cancer-data-with-human-immuno-oncology-profiling-panel-and-custom-add-on-1-standard,Creative Commons Attribution |
| TENX133,train,,Lymphoid,Healthy,Bone marrow,,FFPE,497,0.2736577216971553,13762,36523,3796,78903,Human Bone and Bone Marrow Data with Custom Add-on Panel,,https://www.10xgenomics.com/datasets/human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard,Creative Commons Attribution |
| TENX134,train,,Lymphoid,Cancer,Bone marrow,ALL,FFPE,500,0.2734917683954451,11024,37252,4392,225289,Human Bone and Bone Marrow Data with Custom Add-on Panel,,https://www.10xgenomics.com/datasets/human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard,Creative Commons Attribution |
| TENX126,train,,Pancreas,Cancer,Pancreas,PAAD,FFPE,475,0.2738901649143521,14896,27502,5099,140194,FFPE Human Pancreas with Xenium Multimodal Cell Segmentation,,https://www.10xgenomics.com/datasets/ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation-1-standard,Creative Commons Attribution |
| TENX140,train,,Pancreas,Cancer,Pancreas,PAAD,FFPE,499,0.2737677105869734,19068,41014,9211,234853,FFPE Human Pancreatic Ductal Adenocarcinoma Data with Human Immuno-Oncology Profiling Panel,,https://www.10xgenomics.com/datasets/ffpe-human-ductal-adenocarcinoma-data-with-human-immuno-oncology-profiling-panel-1-standard,Creative Commons Attribution |
| TENX115,train,,Skin,Cancer,Skin,SKCM,FFPE,302,0.2736897890251921,20342,22673,4297,106789,Human Skin Preview Data (Xenium Human Skin Gene Expression Panel),,https://www.10xgenomics.com/datasets/human-skin-preview-data-xenium-human-skin-gene-expression-panel-1-standard,Creative Commons Attribution |
| TENX117,train,,Skin,Cancer,Skin,SKCM,FFPE,498,0.1368527629551209,22209,43287,9457,87499,Human Skin Preview Data (Xenium Human Skin Gene Expression Panel with Custom Add-On),,https://www.10xgenomics.com/datasets/human-skin-preview-data-xenium-human-skin-gene-expression-panel-add-on-1-standard,Creative Commons Attribution |
| TENX123,train,,Skin,Healthy,Skin,,FFPE,453,0.2125,56906,42131,14630,62457,Human Skin Data with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| TENX149,val,,Bowel,Cancer,Colon,COAD,FFPE,500,0.2740308880582206,70534,60222,9420,307382,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling,https://www.biorxiv.org/content/10.1101/2024.06.04.597233v1.full,https://www.10xgenomics.com/products/visium-hd-spatial-gene-expression/dataset-human-crc,Creative Commons Attribution |
| NCBI785,val,,Breast,Cancer,Breast,IDC,FFPE,341,0.3639107956749145,30786,24241,6280,166364,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [Xenium]",https://www.nature.com/articles/s41467-023-43458-x, ,see source (NCBI GEO) |
| NCBI883,val,,Lung,Healthy,Lung,,FFPE,481,0.2125,17145,16597,2829,34674,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| TENX118,val,,Lung,Cancer,Lung,LUAD,FFPE,491,0.2738558376865452,11580,45087,4883,161052,Preview Data: FFPE Human Lung Cancer with Xenium Multimodal Cell Segmentation,,https://www.10xgenomics.com/datasets/preview-data-ffpe-human-lung-cancer-with-xenium-multimodal-cell-segmentation-1-standard,Creative Commons Attribution |
| TENX132,test,OOD,Bone,Healthy,Femur bone,,FFPE,499,0.2737036643999411,34751,36158,8096,33005,Human Bone and Bone Marrow Data with Custom Add-on Panel,,https://www.10xgenomics.com/datasets/human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard,Creative Commons Attribution |
| TENX148,test,ID,Bowel,Cancer,Colon,COAD,FFPE,500,0.2737603571635976,75184,48582,9421,339681,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling,https://www.biorxiv.org/content/10.1101/2024.06.04.597233v1.full,https://www.10xgenomics.com/products/visium-hd-spatial-gene-expression/dataset-human-crc,Creative Commons Attribution |
| TENX138,test,OOD,Brain,Cancer,Brain,GBM,FFPE,500,0.2736653437476312,38957,58584,23927,816506,FFPE Human Brain Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on,,https://www.10xgenomics.com/datasets/ffpe-human-brain-cancer-data-with-human-immuno-oncology-profiling-panel-and-custom-add-on-1-standard,Creative Commons Attribution |
| NCBI784,test,ID,Breast,Cancer,Breast,IDC,FFPE,341,0.2125,30786,19877,4652,111874,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [Xenium]",https://www.nature.com/articles/s41467-023-43458-x, ,see source (NCBI GEO) |
| TENX119,test,OOD,Heart,Healthy,Heart,,FFPE,465,0.2737030184716127,24544,10645,4039,26324,Human Heart Data with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/human-heart-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| TENX106,test,OOD,Kidney,Healthy,Kidney,,FFPE,397,0.2737278851462893,11949,33427,5063,97510,Human Kidney Preview Data (Xenium Human Multi-Tissue and Cancer Panel),,https://www.10xgenomics.com/datasets/human-kidney-preview-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| TENX120,test,OOD,Liver,Cancer,Liver,HCC,FFPE,497,0.273694413675181,15404,33795,7051,162619,Human Liver Data with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| NCBI879,test,ID,Lung,Healthy,Lung,,FFPE,493,0.2125,14312,16598,2292,23504,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis,https://www.biorxiv.org/content/10.1101/2023.12.15.571954v2,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250346,see source (NCBI GEO) |
| TENX124,test,ID,Lymphoid,Diseased,Tonsil,,FFPE,500,0.2736874651966854,47351,33969,15572,862378,Human Tonsil Data with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/human-tonsil-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| TENX142,test,OOD,Ovary,Cancer,Ovary,HGSOC,FFPE,500,0.2737064931431684,21806,37330,7468,247454,FFPE Human Ovarian Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on,,https://www.10xgenomics.com/datasets/ffpe-human-ovarian-cancer-data-with-human-immuno-oncology-profiling-panel-and-custom-add-on-1-standard,Creative Commons Attribution |
| TENX116,test,ID,Pancreas,Cancer,Pancreas,PAAD,FFPE,494,0.136887203675011,20562,71883,19584,190955,Pancreatic Cancer with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/pancreatic-cancer-with-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
| TENX122,test,ID,Skin,Healthy,Skin,,FFPE,435,0.2125,19058,33606,8050,86381,Human Skin Data with Xenium Human Multi-Tissue and Cancer Panel,,https://www.10xgenomics.com/datasets/human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard,Creative Commons Attribution |
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