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d5d6ba3 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 | # GraphRareBench Dataset Card
## Summary
GraphRareBench is a provenance-preserving benchmark for phenotype-driven
rare-disease ranking. The frozen release contains 2,365
ontology-derived cases, 18,093
target-confounder pairs, coarsened HPO queries, fixed candidate pools,
graph-defined hard confounders, and source-linked evidence records.
## Intended Use
Use the release to evaluate closed candidate-set rare-disease ranking methods,
target-over-confounder discrimination, mechanism-specific failures, and
tool-mediated evidence-access behavior.
## Splits
- Train: 1,892 cases
- Dev: 236 cases
- Test: 237 cases
Diseases connected through the same causal-gene component are assigned to the
same partition when gene annotations are available.
## Metrics
The accompanying code computes MRR, Hit@1/5/10, ToC_case, ToC_pair,
AnyConfAbove, mechanism-sliced ToC_pair, case-level bootstrap confidence
intervals, paired bootstrap contrasts, and deterministic tool-trace audit
metrics.
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