RelaxDB / relaxdb /relaxdb-cpmg_data.csv
Gina El Nesr
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id,protein_name,uniprot_id,sequence,label,curation_source,data_type,phosphate,pdb
AQADK_CPMG,AqAdK,O66490,MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDGN,.AAAAA.PPXN...YANYANNANYXNNXXX..XYAAAAANANXPAYAAAANYYYAXNNXPXAANAANNAAAXP..AXNNAAYAPXXAAYNNANNNNAAANANXXAXAANAXXPXANAA.ANYAANXXPNYANAXANANXPPPPNNXXANYAXAAPAANAAANNNNXNAYAPANAANXNAAAXAXNNXYAPNAAANAXNAAXANNAX,,R2eff / vCPMG,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/AQADK_CPMG.pdb
CYPA_CPMG,CypA,P62937,MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE,..APAAAAAYAAAAAPAXAAAAAAAAAAAPAYAAAAAAAAXAAXAXAX.YAXA.XXAPAAAXXAAAXXYNXYAXAXXXAA.XXAAYXXAAAXAAPAAAXAYXAAPAYXXXXAXAAANXXXAXNYXXXXYAAAAAYAAAAAXAAAAAAYYAAAAAAAAYAAAAAAA,,R2eff / vCPMG,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/CYPA_CPMG.pdb
BLVRB_CPMG,BLVRB,P30043,MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQYQ,ANAAYAAAXXAYXYXXAXYAAAAANAAAAAAAAAAYYAAAPYAAPAPAAAAAAANAAAYANAAYAAAAAAAAAXNXXYYXAAPXXANYAANNAAAAANAYXAANAAXXXNXNXYNANPYAYPPXXXXANXXXXXXXNAAXANAAAXXXXAPPXXXAXPAYYAAXNN..AN.P..NXYXAAAAANAAAYAAAANYAXXX..P...XA,Data private correspondence from EZE. Rex labe...,R2eff / vCPMG,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/BLVRB_CPMG.pdb
ARGKIN_CPMG,Arginine Kinase,P51541,MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA,..ANANAANAAAAAAANAAAAAAAAAAAAAAAAAAANAANAAAAANAAAAAAAAAAAAAANAAAAAANAPXANAAAAAAPANAPAAAXAXAXAAAAAAAPPAAAANAAAAAAAAPAANAAAANAAXXAXAAAAAPXXPAAAAANNAAAAAAAAAAAAAAAAAAAAAAAPAAAANAANAAAAXXXXAAANXXXXNAAXXAXXXN.PXXXXAAAAAAAAAAXAXAN..AAXAAAAXNAANAAAAANNAAAAAAANAAAAPAAAAAAAAAAAXXP.X.XA.AAAANAAAAPAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAAAAAAAAAANXAAANAAAA....AANNNAANAAAAA,Rex labels were taken from original paper in F...,"Labels for Rex > 2 Hz, raw data for a few",FALSE,relaxdb/af2_pdbs/CPMG_pdbs/ARGKIN_CPMG.pdb
VHR_CPMG,VHR (PTP),P51452,MSGSFELSVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQLCQLNDRLAKEGKLKP,.YAAAAAAAXAAAAAAAAXAAAXAXPXAPXAAXXP.AXAAXAAAXAXAPAAAXAAAXXXAXAXAAX.NY..XXNAAAYNAY.AAAAAXXA.XAAXYXYXAYAAAAAAAXAAAAAAY.AXAAAAX.......PAAAXAAAAAAAAAAAAAAAAAAAAAXX..PAXAXAAXAAAAAAAAAAAAAAAP,Taken from 800 MHz data (Table 7.10.3 in disse...,R2eff / vCPMG,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/VHR_CPMG.pdb
BLAC_CPMG,BLAC,P9WKD3,GDLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA,..AAAAAAAANAAAAAAAAAAAPANYAAAAAAAAAAAAXAXX.XXAAPXAAAAAYAAPYYAAAAAAAXYAAAAXAYYPAAAAAAAAAAAAANAAAAXXXA.XXYAAAAAAAANAXPYAXNAAAAAAAAAAAAAAXXAYXXXPXAXXAPPNXAAXAAAPAAAAAAAAAAAAAYAAPPAAAAAAAAAAXAAXXXXAAXYAAXPAAAAAAXN.X.XAAAXXAXAXAAXAPAAAPAAAAAAAXAAAAAAXAAPXAAAAAAAAAAAAAAAA,Rex labels were assigned > 2 Hz from 850 Hz d...,R2eff / vCPMG,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/BLAC_CPMG.pdb
RNASE_CPMG,RNase A,P61824,KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV,AAAAAAAAXAXAXAXXXAAXAXAAAAXAAXAXAXXAAAAAXPAXAXXAAAAAAAAAAAXXAAAXAXAXAAXAAAAAAAAAAAXXAAXAAAAAPAAAAAAXXAAAAAAAAAAAAPAAPAXAXAAA,Labels were taken from residues with >3 Hz at ...,R2eff / vCPMG for residues with Rex > 3/s,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/RNASE_CPMG.pdb
CHEY_CPMG,CheY,P0AE67,MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM,.AAAAAAAAAAA....AXXAAAAAAAAAAAAAAAAXAX.AAAAAAAAAAAAAAAAAA...PXAX.AXXXAAAAAAAAAAAAPAAAAXAA.A.AXAAAAAAAAAAAAXAAPAAAAAAAAAAAAAAAAXAA,"Figure 2 (missing peaks labels), Table 2 (Rex ...",labels in table,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/CHEY_CPMG.pdb
HTPDZ_CPMG,"Serine protease HTRA2, mitochondrial",O43464,SGISGSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIRRGRETLTLYVTPEVTELE,..ANAAXAXX........XP...AAXXA.XPXXPX.NXX.X...XXAXAPAAAAAAAP.XXAXAAX.AA.X..XXXX.XAAAA.AAAAAAXNXAXXXAAAAAPXXAAAN,"Cross-referenced source data, assns in BMRB 51...",Rex values,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/HTPDZ_CPMG.pdb
KRAS_CPMG,KRAS,,MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK,AAAAAXAXXAXXXXAXXAAXXAXAAXAAXXXNXPYXXXXXAAXAXAXAAAXXAXNXXXXXXXX.NXXXXXXNXXXAAAXAAAAAAANAAAAXXAXAXXAAXXXAAAAAAPAXAAANAAAAPAAAAAAAAAAAAAAAAAAPAAAXAAAAXAAAAAAAAAAAAAAAAAAAA,,R2eff / vCPMG,FALSE,relaxdb/af2_pdbs/CPMG_pdbs/KRAS_CPMG.pdb