import numpy as np import scipy from scipy import signal import os import lmdb import pickle from scipy.signal import butter, lfilter, resample, filtfilt def butter_bandpass(low_cut, high_cut, fs, order=5): nyq = 0.5 * fs low = low_cut / nyq high = high_cut / nyq b, a = butter(order, [low, high], btype='band') return b, a root_dir = '/data/datasets/BCICIV2a/data_mat' files = [file for file in os.listdir(root_dir)] files = sorted(files) # files.remove('A04E.mat') # files.remove('A04T.mat') # files.remove('A06E.mat') # files.remove('A06T.mat') print(files) files_dict = { 'train': ['A01E.mat', 'A01T.mat', 'A02E.mat', 'A02T.mat', 'A03E.mat', 'A03T.mat', 'A04E.mat', 'A04T.mat', 'A05E.mat', 'A05T.mat'], 'val': [ 'A06E.mat', 'A06T.mat', 'A07E.mat', 'A07T.mat' ], 'test': ['A08E.mat', 'A08T.mat', 'A09E.mat', 'A09T.mat'], } dataset = { 'train': list(), 'val': list(), 'test': list(), } # for file in files: # if 'E' in file: # files_dict['train'].append(file) # else: # files_dict['test'].append(file) # # print(files_dict) db = lmdb.open('/data/datasets/BCICIV2a/processed_inde_avg_filter', map_size=1610612736) for files_key in files_dict.keys(): for file in files_dict[files_key]: print(file) data = scipy.io.loadmat(os.path.join(root_dir, file)) num = len(data['data'][0]) # print(num) # print(data['data'][0, 8][0, 0][0].shape) # print(data['data'][0, 8][0, 0][1].shape) # print(data['data'][0, 8][0, 0][2].shape) for j in range(3, num): raw_data = data['data'][0, j][0, 0][0][:, :22] events = data['data'][0, j][0, 0][1][:, 0] labels = data['data'][0, j][0, 0][2][:, 0] length = raw_data.shape[0] events = events.tolist() events.append(length) # print(events) annos = [] for i in range(len(events) - 1): annos.append((events[i], events[i + 1])) for i, (anno, label) in enumerate(zip(annos, labels)): sample = raw_data[anno[0]:anno[1]].transpose(1, 0) sample = sample - np.mean(sample, axis=0, keepdims=True) # print(samples.shape) b, a = butter_bandpass(0.3, 40, 250) sample = lfilter(b, a, sample, -1) # print(sample.shape) sample = sample[:, 2 * 250:6 * 250] sample = resample(sample, 800, axis=-1) # print(sample.shape) # print(i, sample.shape, label) sample = sample.reshape(22, 4, 200) sample_key = f'{file[:-4]}-{j}-{i}' print(sample_key, label-1) data_dict = { 'sample': sample, 'label': label - 1 } # print(label-1) txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(data_dict)) txn.commit() dataset[files_key].append(sample_key) txn = db.begin(write=True) txn.put(key='__keys__'.encode(), value=pickle.dumps(dataset)) txn.commit() db.close()