import os import mne import numpy as np import lmdb import pickle #遍历文件夹 def iter_files(rootDir): #遍历根目录 files_H, files_MDD = [], [] for file in os.listdir(rootDir): if 'TASK' not in file: if 'MDD' in file: files_MDD.append(file) else: files_H.append(file) return files_H, files_MDD selected_channels = ['EEG Fp1-LE', 'EEG Fp2-LE', 'EEG F3-LE', 'EEG F4-LE', 'EEG C3-LE', 'EEG C4-LE', 'EEG P3-LE', 'EEG P4-LE', 'EEG O1-LE', 'EEG O2-LE', 'EEG F7-LE', 'EEG F8-LE', 'EEG T3-LE', 'EEG T4-LE', 'EEG T5-LE', 'EEG T6-LE', 'EEG Fz-LE', 'EEG Cz-LE', 'EEG Pz-LE'] rootDir = '/data/datasets/MDDPHCED/files' files_H, files_MDD = iter_files(rootDir) files_H = sorted(files_H) files_MDD = sorted(files_MDD) print(files_H) print(files_MDD) print(len(files_H), len(files_MDD)) files_dict = { 'train':[], 'val':[], 'test':[], } dataset = { 'train': list(), 'val': list(), 'test': list(), } files_dict['train'].extend(files_H[:40]) files_dict['train'].extend(files_MDD[:42]) files_dict['val'].extend(files_H[40:48]) files_dict['val'].extend(files_MDD[42:52]) files_dict['test'].extend(files_H[48:]) files_dict['test'].extend(files_MDD[52:]) print(files_dict['train']) print(files_dict['val']) print(files_dict['test']) db = lmdb.open('/data/datasets/MDDPHCED/processed_lmdb_75hz', map_size=1273741824) for files_key in files_dict.keys(): for file in files_dict[files_key]: raw = mne.io.read_raw_edf(os.path.join(rootDir, file), preload=True) print(raw.info['ch_names']) raw.pick_channels(selected_channels, ordered=True) print(raw.info['ch_names']) raw.resample(200) raw.filter(l_freq=0.3, h_freq=75) raw.notch_filter((50)) # raw.plot_psd(average=True) eeg_array = raw.to_data_frame().values # print(raw.info) eeg_array = eeg_array[:, 1:] points, chs = eeg_array.shape print(eeg_array.shape) a = points % (5 * 200) print(a) if a != 0: eeg_array = eeg_array[:-a, :] eeg_array = eeg_array.reshape(-1, 5, 200, chs) eeg_array = eeg_array.transpose(0, 3, 1, 2) print(eeg_array.shape) label = 1 if 'MDD' in file else 0 for i, sample in enumerate(eeg_array): sample_key = f'{file[:-4]}_{i}' data_dict = { 'sample': sample, 'label': label } txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(data_dict)) txn.commit() dataset[files_key].append(sample_key) txn = db.begin(write=True) txn.put(key='__keys__'.encode(), value=pickle.dumps(dataset)) txn.commit() db.close()