import scipy from scipy import signal import os import lmdb import pickle import numpy as np import mne tasks = ['04', '06', '08', '10', '12', '14'] # select the data for motor imagery root_dir = '/data/datasets/eeg-motor-movementimagery-dataset-1.0.0/files' files = [file for file in os.listdir(root_dir)] files = sorted(files) files_dict = { 'train': files[:70], 'val': files[70:89], 'test': files[89:109], } print(files_dict) dataset = { 'train': list(), 'val': list(), 'test': list(), } selected_channels = ['Fc5.', 'Fc3.', 'Fc1.', 'Fcz.', 'Fc2.', 'Fc4.', 'Fc6.', 'C5..', 'C3..', 'C1..', 'Cz..', 'C2..', 'C4..', 'C6..', 'Cp5.', 'Cp3.', 'Cp1.', 'Cpz.', 'Cp2.', 'Cp4.', 'Cp6.', 'Fp1.', 'Fpz.', 'Fp2.', 'Af7.', 'Af3.', 'Afz.', 'Af4.', 'Af8.', 'F7..', 'F5..', 'F3..', 'F1..', 'Fz..', 'F2..', 'F4..', 'F6..', 'F8..', 'Ft7.', 'Ft8.', 'T7..', 'T8..', 'T9..', 'T10.', 'Tp7.', 'Tp8.', 'P7..', 'P5..', 'P3..', 'P1..', 'Pz..', 'P2..', 'P4..', 'P6..', 'P8..', 'Po7.', 'Po3.', 'Poz.', 'Po4.', 'Po8.', 'O1..', 'Oz..', 'O2..', 'Iz..'] db = lmdb.open('/data/datasets/eeg-motor-movementimagery-dataset-1.0.0/processed_average', map_size=4614542346) for files_key in files_dict.keys(): for file in files_dict[files_key]: for task in tasks: raw = mne.io.read_raw_edf(os.path.join(root_dir, file, f'{file}R{task}.edf'), preload=True) raw.pick_channels(selected_channels, ordered=True) if len(raw.info['bads']) > 0: print('interpolate_bads') raw.interpolate_bads() raw.set_eeg_reference(ref_channels='average') raw.filter(l_freq=0.3, h_freq=None) raw.notch_filter((60)) raw.resample(200) events_from_annot, event_dict = mne.events_from_annotations(raw) epochs = mne.Epochs(raw, events_from_annot, event_dict, tmin=0, tmax=4. - 1.0 / raw.info['sfreq'], baseline=None, preload=True) data = epochs.get_data(units='uV') events = epochs.events[:, 2] print(data.shape, events) data = data[:, :, -800:] bz, ch_nums, _ = data.shape data = data.reshape(bz, ch_nums, 4, 200) print(data.shape) for i, (sample, event) in enumerate(zip(data, events)): if event != 1: sample_key = f'{file}R{task}-{i}' data_dict = { 'sample': sample, 'label': event - 2 if task in ['04', '08', '12'] else event } txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(data_dict)) txn.commit() dataset[files_key].append(sample_key) txn = db.begin(write=True) txn.put(key='__keys__'.encode(), value=pickle.dumps(dataset)) txn.commit() db.close()