import h5py import scipy from scipy import signal import os import lmdb import pickle import numpy as np import pandas as pd train_dir = '/data/datasets/BigDownstream/Imagined speech/mat/Training set' val_dir = '/data/datasets/BigDownstream/Imagined speech/mat/Validation set' test_dir = '/data/datasets/BigDownstream/Imagined speech/mat/Test set' files_dict = { 'train':sorted([file for file in os.listdir(train_dir)]), 'val':sorted([file for file in os.listdir(val_dir)]), 'test':sorted([file for file in os.listdir(test_dir)]), } print(files_dict) dataset = { 'train': list(), 'val': list(), 'test': list(), } db = lmdb.open('/data/datasets/BigDownstream/Imagined speech/processed', map_size=3000000000) for file in files_dict['train']: data = scipy.io.loadmat(os.path.join(train_dir, file)) print(data['epo_train'][0][0][0]) eeg = data['epo_train'][0][0][4].transpose(2, 1, 0) labels = data['epo_train'][0][0][5].transpose(1, 0) eeg = eeg[:, :, -768:] labels = np.argmax(labels, axis=1) eeg = signal.resample(eeg, 600, axis=2).reshape(300, 64, 3, 200) print(eeg.shape, labels.shape) for i, (sample, label) in enumerate(zip(eeg, labels)): sample_key = f'train-{file[:-4]}-{i}' data_dict = { 'sample': sample, 'label': label, } txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(data_dict)) txn.commit() print(sample_key) dataset['train'].append(sample_key) for file in files_dict['val']: data = scipy.io.loadmat(os.path.join(val_dir, file)) eeg = data['epo_validation'][0][0][4].transpose(2, 1, 0) labels = data['epo_validation'][0][0][5].transpose(1, 0) eeg = eeg[:, :, -768:] labels = np.argmax(labels, axis=1) eeg = signal.resample(eeg, 600, axis=2).reshape(50, 64, 3, 200) print(eeg.shape, labels.shape) for i, (sample, label) in enumerate(zip(eeg, labels)): sample_key = f'val-{file[:-4]}-{i}' data_dict = { 'sample': sample, 'label': label, } txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(data_dict)) txn.commit() print(sample_key) dataset['val'].append(sample_key) df = pd.read_excel("/data/datasets/BigDownstream/Imagined speech/mat/Track3_Answer Sheet_Test.xlsx") df_=df.head(53) all_labels=df_.values print(all_labels.shape) all_labels = all_labels[2:, 1:][:, 1:30:2].transpose(1, 0) print(all_labels.shape) print(all_labels) for j, file in enumerate(files_dict['test']): data = h5py.File(os.path.join(test_dir, file)) eeg = data['epo_test']['x'][:] labels = all_labels[j] eeg = eeg[:, :, -768:] eeg = signal.resample(eeg, 600, axis=2).reshape(50, 64, 3, 200) print(eeg.shape, labels.shape) for i, (sample, label) in enumerate(zip(eeg, labels)): sample_key = f'test-{file[:-4]}-{i}' data_dict = { 'sample': sample, 'label': label-1, } txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(data_dict)) txn.commit() print(sample_key) dataset['test'].append(sample_key) txn = db.begin(write=True) txn.put(key='__keys__'.encode(), value=pickle.dumps(dataset)) txn.commit() db.close()