import os import random import mne import numpy as np from tqdm import tqdm import pickle import lmdb selected_channels = { '01_tcp_ar': [ 'EEG FP1-REF', 'EEG FP2-REF', 'EEG F3-REF', 'EEG F4-REF', 'EEG C3-REF', 'EEG C4-REF', 'EEG P3-REF', 'EEG P4-REF', 'EEG O1-REF', 'EEG O2-REF', 'EEG F7-REF', 'EEG F8-REF', 'EEG T3-REF', 'EEG T4-REF', 'EEG T5-REF', 'EEG T6-REF', 'EEG FZ-REF', 'EEG CZ-REF', 'EEG PZ-REF' ], '02_tcp_le': [ 'EEG FP1-LE', 'EEG FP2-LE', 'EEG F3-LE', 'EEG F4-LE', 'EEG C3-LE', 'EEG C4-LE', 'EEG P3-LE', 'EEG P4-LE', 'EEG O1-LE', 'EEG O2-LE', 'EEG F7-LE', 'EEG F8-LE', 'EEG T3-LE', 'EEG T4-LE', 'EEG T5-LE', 'EEG T6-LE', 'EEG FZ-LE', 'EEG CZ-LE', 'EEG PZ-LE' ], '03_tcp_ar_a': [ 'EEG FP1-REF', 'EEG FP2-REF', 'EEG F3-REF', 'EEG F4-REF', 'EEG C3-REF', 'EEG C4-REF', 'EEG P3-REF', 'EEG P4-REF', 'EEG O1-REF', 'EEG O2-REF', 'EEG F7-REF', 'EEG F8-REF', 'EEG T3-REF', 'EEG T4-REF', 'EEG T5-REF', 'EEG T6-REF', 'EEG FZ-REF', 'EEG CZ-REF', 'EEG PZ-REF' ] } def setup_seed(seed): np.random.seed(seed) random.seed(seed) #遍历文件夹 def iter_files(rootDir): #遍历根目录 file_path_list = [] for root,dirs,files in os.walk(rootDir): for file in files: file_name = os.path.join(root,file) # print(file_name) file_path_list.append(file_name) return file_path_list def preprocessing_recording(file_path, file_key_list: list, db: lmdb.open): raw = mne.io.read_raw_edf(file_path, preload=True) if '02_tcp_le' in file_path: for ch in selected_channels['02_tcp_le']: if ch not in raw.info['ch_names']: return raw.pick_channels(selected_channels['02_tcp_le'], ordered=True) elif '01_tcp_ar' in file_path: for ch in selected_channels['01_tcp_ar']: if ch not in raw.info['ch_names']: return raw.pick_channels(selected_channels['01_tcp_ar'], ordered=True) elif '03_tcp_ar_a' in file_path: for ch in selected_channels['03_tcp_ar_a']: if ch not in raw.info['ch_names']: return raw.pick_channels(selected_channels['03_tcp_ar_a'], ordered=True) else: return # print(raw.info) raw.resample(200) raw.filter(l_freq=0.3, h_freq=75) raw.notch_filter((60)) eeg_array = raw.to_data_frame().values # print(raw.info) eeg_array = eeg_array[:, 1:] points, chs = eeg_array.shape if points < 300 * 200: return a = points % (30 * 200) eeg_array = eeg_array[60 * 200:-(a+60 * 200), :] # print(eeg_array.shape) eeg_array = eeg_array.reshape(-1, 30, 200, chs) eeg_array = eeg_array.transpose(0, 3, 1, 2) print(eeg_array.shape) file_name = file_path.split('/')[-1][:-4] for i, sample in enumerate(eeg_array): # print(i, sample.shape) if np.max(np.abs(sample)) < 100: sample_key = f'{file_name}_{i}' print(sample_key) file_key_list.append(sample_key) txn = db.begin(write=True) txn.put(key=sample_key.encode(), value=pickle.dumps(sample)) txn.commit() if __name__ == '__main__': setup_seed(1) file_path_list = iter_files('path...') file_path_list = sorted(file_path_list) random.shuffle(file_path_list) # print(file_path_list) db = lmdb.open(r'path...', map_size=1649267441664) file_key_list = [] for file_path in tqdm(file_path_list): preprocessing_recording(file_path, file_key_list, db) txn = db.begin(write=True) txn.put(key='__keys__'.encode(), value=pickle.dumps(file_key_list)) txn.commit() db.close()