page_content stringlengths 0 46.9k | metadata dict |
|---|---|
### Bug description
The [title-block html template](https://github.com/quarto-dev/quarto-cli/blob/af5c051e8251d3a0535f2e8dcf62d011259c8fb2/src/resources/formats/html/templates/title-block.html) is applied to every page of an HTML book. It would be nice to have (partial) template which runs only on the book's title pag... | {
"assignee": "dragonstyle",
"comments": 11,
"created_at": "2022-08-31T14:44:39Z",
"creator": "ThierryO",
"is_pull_request": false,
"labels": [
"bug",
"enhancement",
"books"
],
"locked": false,
"milestone": "v1.4",
"number": 2235,
"state": "open",
"title": "different template for htm... |
### Bug description
It's been a while since I reported a bug, here is a new one introduced in v1.1 (introduced between v1.1.67 and v1.1.149, and still in v1.1.165 or v1.2.15, likely to be c56d23e7690a5aec4e99b26310ffe12783807709).
This issue is platform/IDE independent.
Issue possibly related to #2166.
````
--... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-08-31T12:24:15Z",
"creator": "mcanouil",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2228,
"state": "closed",
"title": "Theorems and Proofs with code blocks and no header/label caus... |
### Bug description
Pandoc offers two ways to create a block image,
```
```
and
```
![My Caption][ref]
[ref]: file.png
```
BUT, if you want to cross-reference these only the first works. See this testcase:
~~~markdown
---
title: "Crossref Test"
author: Jane Doe
lang:... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-31T10:46:29Z",
"creator": "iandol",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2227,
"state": "closed",
"title": "Allow cross-referencing to work with reference-link images",
"url": ... |
### Bug description
Hello,
After creating a new Quarto blog project, I immediately get a permissions error (OS Error 5) when attempting to render `index.qmd` or `about.rmq`. Sometimes it'll render the website fine, but then I'll get the same error when clicking "About." Both R and RStudio are up to date. (RStudio... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-31T02:23:20Z",
"creator": "dinanajiarch",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "Future",
"number": 2225,
"state": "closed",
"title": "\"Access is denied\" (os error 5) when re... |
### Bug description
A previously working document just failed after upgrading via `git pull` and `./configure.sh`. Then I used the installer, and it has the same error (v 1.1.165). This was working 2 days ago. When I do `quarto preview` the error I see is:
```
~/.../R_Pkgs/CSR(master ✗)> quarto preview
ERROR:... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-31T02:18:02Z",
"creator": "bryanhanson",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2224,
"state": "closed",
"title": "Property name prefs-text is invalid",
"url": "https://github.com/quarto-dev/... |
Our changes to override gt's default styles are over-eager and also change custom styles. | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-30T19:54:42Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "v1.2",
"number": 2222,
"state": "closed",
"title": "fix style override for gt",
"url": "https... |
It is probably a pandoc issue.
but would it be possible that the
```yaml
tbl-cap-location: top
fig-cap-location: top
```
work for docx output?
For the moment, they don't have any effect. | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2022-08-30T18:32:32Z",
"creator": "olivroy",
"is_pull_request": false,
"labels": [
"bug",
"crossref",
"tables",
"docx"
],
"locked": false,
"milestone": "v1.4",
"number": 2221,
"state": "open",
"title": "Add possibility to cha... |
### Bug description
Hello
I was trying to change the font of a Reveal presentation following the themes in GitHub.
I was doing it by adding:
```scss
/*-- scss:defaults --*/
@import url(http://fonts.googleapis.com/css?family=Montserrat:300,300italic,800,800italic);
```
to my SCSS file.
Unfortunately, whe... | {
"assignee": null,
"comments": 5,
"created_at": "2022-08-30T18:14:15Z",
"creator": "rgouveiamendes",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2219,
"state": "closed",
"title": "Font import through SCSS file",
"url": "https://github.com/quarto-dev/qua... |
### Bug description
Trying to render any document with cache is not possible resulting in the message
```
The jupyter-cache package is required for cached execution
```
from [here](https://github.com/quarto-dev/quarto-cli/blob/9f91bdb4fbcc326944f8aea560f3a86797e2459e/src/resources/jupyter/notebook.py#L103)
Th... | {
"assignee": "jjallaire",
"comments": 4,
"created_at": "2022-08-30T16:13:07Z",
"creator": "justanothergithubber",
"is_pull_request": false,
"labels": [
"bug",
"windows"
],
"locked": false,
"milestone": "v1.2",
"number": 2217,
"state": "closed",
"title": "Julia cache does not seem to wor... |
Via Max Kuhn:
> Does quarto have built-in environmental variables (or similar) during qmd compilation that reflects the output type? Similar to knitr::is_html_output() but cross-language and more specific about the output type?
> I’m trying to write single qmd files for books that get compiled in different formats.... | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2022-08-30T16:04:27Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 2216,
"state": "open",
"title": "communicate format output to all engines ",
"url": "ht... |
### Bug description
Hi, I use [BasicTeX](https://tug.org/mactex/morepackages.html), a small TeX Live 2022 install for macOS. When rendering to PDF I get a permission error when `tlmgr` tries to install a required package.
It would be nice if **I could enter my password when required**. I can also manually run `t... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-30T16:01:29Z",
"creator": "iandol",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 2215,
"state": "open",
"title": "tlmgr cannot install using macOS 12.5.1 and a BasicTeX inst... |
### Bug description
I had a document with a graphviz chart, and when I rendered to PDF I got the following error:
```
▷ quarto render Quarto.qmd --to pdf
ERROR: NotFound: No such file or directory (os error 2)
Exception: quarto exited with 1
[tty 150], line 1: quarto render Quarto.qmd --to pdf
```
Rendering... | {
"assignee": "cscheid",
"comments": 34,
"created_at": "2022-08-30T15:54:35Z",
"creator": "iandol",
"is_pull_request": false,
"labels": [
"bug",
"mermaid",
"chromium"
],
"locked": false,
"milestone": "v1.3",
"number": 2214,
"state": "closed",
"title": "Cryptic error message when chro... |
### Bug description
In a quarto website/blog project, I put this in `_quarto.yml` to set the "default" author:
```yaml
format:
html:
author: someAuthor
```
And I don't want to display it on the main page, so I put `author: Null` in `index.qmd`. This worked well with quarto ported with RStudio 2022.07.1... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-08-30T13:23:16Z",
"creator": "mksinicus",
"is_pull_request": false,
"labels": [
"bug",
"yaml-validation"
],
"locked": false,
"milestone": "v1.3",
"number": 2210,
"state": "closed",
"title": "Project-wide YAML metadata cannot be ... |
### Bug description
I have see this type of issue several time already: https://github.com/quarto-ext/lightbox/issues/9
````
Error running filter lightbox:
Could not find executable lightbox
````
It seems it is confusing for user what this means, especially as they tried to use an extension and the error does... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-30T09:06:26Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"duplicate"
],
"locked": false,
"milestone": null,
"number": 2207,
"state": "closed",
"title": "Better error when extension filter is not found",
"url": "https... |
### Context
In looking to develop a [Format for Confluence](https://github.com/quarto-dev/quarto-cli/issues/2038), I've been investigating a minimal HTML reset format. It seems that some `link`s can't currently be removed from the HTML format when `minimal=true`. These scripts would be stripped out by Confluence so ... | {
"assignee": "allenmanning",
"comments": 4,
"created_at": "2022-08-30T08:03:49Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": null,
"number": 2206,
"state": "closed",
"title": "Enhancement: Min HTML Template / full reset w... |
I followed the following wizard in RStudio:
1) `New Project`
2) `New Directory`
3) `Quarto book`
4) typed in the directory name
Create project as subdirectory of: [on a local drive] D:/directoryname
5) select "use renv with this project"
6) click `Create Project`
I got this:
'C:/Program' is not recognized a... | {
"assignee": "jjallaire",
"comments": 11,
"created_at": "2022-08-30T04:16:22Z",
"creator": "linlennypinawa",
"is_pull_request": false,
"labels": [
"bug",
"upstream"
],
"locked": false,
"milestone": "v1.2",
"number": 2208,
"state": "closed",
"title": "problem with creation of quarto book... |
I started this discussion a few months ago. I have a `book` project with a collection of chapters, which I'd like to render as separate `revealjs` presentations. Every way I've tried to do this either renders to the `html` format or returns the error `WARNING: The revealjs format is not supported by book projects`. ... | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-08-30T00:36:49Z",
"creator": "dhicks",
"is_pull_request": false,
"labels": [
"bug",
"needs-discussion"
],
"locked": false,
"milestone": "v1.2",
"number": 2200,
"state": "closed",
"title": "book chapters can't be rendered as ... |
We should have a `lst-cap-location` to control the location of listing captions in the same way that we control figure and table caption locations.
While we're at it, `lst-cap-location` should also be controllable from `cap-location`. | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-08-29T20:25:31Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 2196,
"state": "open",
"title": "`lst-cap-location`",
"url": "https://github.co... |
````
```{#lst-prefs .python lst-cap="Sum Function" filename=sum.py}
def sum(a, b):
sum = a + b
print(f'Sum: {sum}`)
return sum
```
````
<img width="896" alt="image" src="https://user-images.githubusercontent.com/285675/187291268-12dd5601-c98f-4502-8b6a-3517c5b949a0.png">
(Thanks, @jpmorr)
| {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-29T20:22:27Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 2195,
"state": "closed",
"title": "listing caption interacts badly with listing filename",
"url... |
The following error message is very hard to read:
```
Key sidebar has value background: primary
logo: "images/logo.png"
...
- href: schedule.qmd
text: Schedule, which must be `true`... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-29T15:59:58Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement",
"yaml-validation"
],
"locked": false,
"milestone": "v1.2",
"number": 2191,
"state": "closed",
"title": "Improve YAML validation error m... |
We had a bad validation error come from https://github.com/rstudio-conf-2022/teach-ds-course-website/blob/ef90e6111411bc9d2b6feb4b2e5b49dc6c24e55b/_quarto.yml under our v1.1 schema closure.
### Context
... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-29T15:45:46Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug",
"yaml-validation"
],
"locked": false,
"milestone": "Future",
"number": 2190,
"state": "open",
"title": "yaml validation error heuristics are no... |
### Bug description
This was encounter in https://community.rstudio.com/t/quarto-unable-to-locate-r-installation/144340/5
In some installation, it is possible that R defaults packages are not loaded. See https://stat.ethz.ch/R-manual/R-devel/library/base/html/Startup.html
> If you want a different set of pack... | {
"assignee": "cderv",
"comments": 0,
"created_at": "2022-08-29T13:32:17Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2187,
"state": "closed",
"title": "Correctly namespace usage of R default package functions like utils"... |
Would it be possible to enable the quarto options for code folding and linking to the hugo format (as per html)?
```
format:
hugo:
code-fold: true
code-link: true
``` | {
"assignee": "jjallaire",
"comments": 7,
"created_at": "2022-08-29T13:30:41Z",
"creator": "cgoo4",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.2",
"number": 2186,
"state": "closed",
"title": "Hugo code folding and linking",
"url": "https://gith... |
### Bug description
<img width="960" alt="image" src="https://user-images.githubusercontent.com/786803/187203159-ab45f23a-5612-483e-8006-b719c47350dd.png">
I am generating a blog site with quarto on windows 11 using vscode. Freeze directory is not generated on running quarto render command on cmd.exe or using Qu... | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-08-29T12:46:46Z",
"creator": "Rahuketu86",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2185,
"state": "closed",
"title": "Freeze directory not formed on windows 11",
"url": "h... |
I was not able to create quarto document.
When I tped `quarto check` in cmd,an error occorred .
```
C:\Users\yuliang18\Documents>quarto check
[>] Checking Quarto installation......OK
Version: 1.1.149
Path: C:\Users\yuliang18\AppData\Local\Programs\Quarto\bin\
CodePage: unknown
[>] Che... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-29T02:22:59Z",
"creator": "antonio-yu",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 2184,
"state": "closed",
"title": ">quarto check . Knitr engine render error.",
"url": "h... |
### Bug description
Render this document fails using the latest nightly release of Quarto
```
---
format: pdf
---
```
Example in R
``` r
file.create("test.qmd")
#> [1] TRUE
writeLines(c("---", "format: pdf", "---"), "test.qmd")
tryCatch(quarto::quarto_render("test.qmd"),
error = fun... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-28T23:45:35Z",
"creator": "qiushiyan",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2183,
"state": "closed",
"title": "Render PDF fails with empty content",
"url": "https://github.com/... |
### Bug description
```md
Watching files for changes
Browse at http://localhost:3849/chapter/part01/myfile.html
GET: /chapter/part01/myfile.html
ERROR: AlreadyExists: Cannot create a file when that file already exists. (os error 183), mkdir 'H:\My Drive\...\site_libs\quarto-nav'
System: windows
IDE: Vscode
... | {
"assignee": "dragonstyle",
"comments": 8,
"created_at": "2022-08-28T12:55:55Z",
"creator": "jefferds",
"is_pull_request": false,
"labels": [
"bug",
"file-systems"
],
"locked": false,
"milestone": "v1.4",
"number": 2174,
"state": "open",
"title": "ERROR: AlreadyExists: (os error 183), ... |
I was sketching a theorem using a bullet point list inside a div and stumbled upon the following issue.
The following minimal example using (un-)ordered lists inside a theorem div
```markdown
---
title: "unexpected caption item"
---
::: {#thm-unordered-list}
## This heading shouldn't have a bullet point
... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-27T15:05:16Z",
"creator": "vmichals",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2166,
"state": "closed",
"title": "Heading in theorem is included as item in list in theorem bod... |
Mermaid allows theming / styling diagrams with
- ready-made built-in themes
- user-provided CSS
- combination of both above
If this can already be used through Quarto, please document how. (I didn't find anything about it in the documentation.)
If not, please consider adding a possibility to do so. (Best proba... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-08-27T13:21:31Z",
"creator": "das-g",
"is_pull_request": false,
"labels": [
"enhancement",
"mermaid"
],
"locked": false,
"milestone": "Future",
"number": 2165,
"state": "closed",
"title": "allow theming & styling Mermaid diagram... |
### Bug description
With the new quarto 1.1.147 release we see the following error when rendering a book
(https://github.com/mlr-org/mlr3book/runs/8047883939?check_suite_focus=true#step:13:16)
```bash
In file book/_quarto.yml
(line 67, column 7 through line 68, column 23) Key code-tools has value toggle: true
... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-27T08:56:27Z",
"creator": "pat-s",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2161,
"state": "closed",
"title": "`code-tools` options mapping buggy in v1.1?",
"url": "https://github.... |
I tried to create a new quarto document in Rstudio, through `File >> new file >> quarto document .`
Error occoured as mentioned in the title,
| {
"assignee": null,
"comments": 3,
"created_at": "2022-08-27T08:47:51Z",
"creator": "antonio-yu",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2160,
"state": "closed",
"title": "an error occourred when parsing json : offset :2",
"url": "https://github.com... |
### Bug description
Hi,
I _think_ this is a bug and not a case of user error (if it's the latter, sorry!).
I am using the pre-release CLI 1.2.15 on an intel Mac (running 12.5.1) from the command line. This happens with both R and python posts.
I am trying to change the default twitter card (blog_title:title do... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-27T08:07:45Z",
"creator": "dpsimpson",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2159,
"state": "closed",
"title": "(Small) Bug: Twitter card description not copied from twitter-car... |
### Bug description
After pulling the commits today, I receive the following error on validation of the pre-render field in the project yaml file `_quarto.yml`:
```bash
ERROR: Project _quarto.yml validation failed.
In file _quarto.yml
(line 4, columns 3--13) property name pre-render is invalid
3: output-dir... | {
"assignee": null,
"comments": 6,
"created_at": "2022-08-26T20:02:07Z",
"creator": "juliantao",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2155,
"state": "closed",
"title": "failed yaml validation on \"pre-render\"",
"url": "https://github... |
### Bug description
In chunk yaml, when I do "fig-cap-location: top" I still end up with the caption at the bottom. Setting it to "margin" works as expected. Published example is [here](https://quartopub.com/sites/356a4843-4b95-4082-9854-db5b0207f28f) on quarto-pub.
Might this be related to [this issue](https://... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-08-26T18:47:41Z",
"creator": "johngoldin",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 2154,
"state": "open",
"title": "fig-cap-location:top does place the caption a... |
I just updated my quarto (to 1.1.140) and got the following error:
`ERROR: Project _quarto.yml validation failed.`
`In file www/_quarto.yml`
`(line 10, columns 3--14) property name reader-mode is invalid`
` 9: website:`
`10: reader-mode: true`
I see that reader-mode is still in the documentation. Any adv... | {
"assignee": "dragonstyle",
"comments": 9,
"created_at": "2022-08-26T18:02:36Z",
"creator": "kmkinnaird",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 2153,
"state": "closed",
"title": "Help with error? property name reader-mode is invalid",
"url": "ht... |
### Bug description
gfm output that has pandas dataframes printed out, renders incorrectly on Github, possibly because of GitHub not respecting <style scoped> tags.
Input qmd:
````md
---
title: "Untitled"
format: gfm
---
```{python}
import pandas as pd
iris = pd.read_csv('https://raw.githubuserconte... | {
"assignee": "cscheid",
"comments": 12,
"created_at": "2022-08-26T17:53:14Z",
"creator": "kalenkovich",
"is_pull_request": false,
"labels": [
"bug",
"upstream"
],
"locked": false,
"milestone": "v1.3",
"number": 2152,
"state": "closed",
"title": "gfm output of pandas dataframes rendered ... |
the solution from that thread https://github.com/quarto-dev/quarto-cli/discussions/2060#discussioncomment-3455375 no longer works with the latest version 1.1.132. I've uninstalled that version and gone back to 1.1.57 which works fine with the `book.isbn` solution from the windows terminal. That's a workaround for me n... | {
"assignee": "cscheid",
"comments": 14,
"created_at": "2022-08-26T15:25:23Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"yaml-validation"
],
"locked": false,
"milestone": "v1.2",
"number": 2148,
"state": "closed",
"title": "Using metadata under `book` key cannot be reference... |
### Bug description
I am trying to run Quarto for the first time. I have installed the deb package on my Ubuntu Focal machine. My first attempt to render the `hello.qmd` test file failed:
```
.../quarto/tutorial quarto render hello.qmd --to html
Starting python3 kernel...Traceback (most recent call last):
F... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-26T15:14:14Z",
"creator": "plantarum",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2147,
"state": "closed",
"title": "Missing Python dependencies in Ubuntu",
"url": "https://github.co... |
### Bug description
The following mistake was entirely my fault but I found the behavior slightly unexpected compared to standard command line interfaces and the error message made it difficult to immediately identify what the issue was. Running the following render command produces the below error.
```
$ quarto ren... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-26T15:06:55Z",
"creator": "rundel",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 2146,
"state": "open",
"title": "Confusing error with quarto render when swapping input and a... |
### Bug description
After installing the latest Quarto version on Windows 11, VS Code no longer finds the quarto app when clicking on the render button when working on a `.qmd` file. I've restarted Windows after the install.
![image](https://user-images.githubusercontent.com/10863809/186902890-93fa25cb-e38a-4c0a-... | {
"assignee": null,
"comments": 23,
"created_at": "2022-08-26T12:23:51Z",
"creator": "jpmorr",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2143,
"state": "closed",
"title": "VS Code not finding Quarto after updating to latest version",
"url"... |
### Bug description
I created a book project using RStudio and only added the `repo-url` and `repo-actions`
In `_quarto.yml` I have
```yaml
book:
title: "sidebarbug"
author: "Jane Doe"
date: "8/26/2022"
chapters:
- index.qmd
- intro.qmd
- summary.qmd
- references.qmd
repo-url:... | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-08-26T12:16:44Z",
"creator": "maelle",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 2142,
"state": "closed",
"title": "repo-actions links do not appear if there is no TOC",
"ur... |
### Bug description
I have a template where many files and resources needs to be added for correct pdf output. I opted to include some logos in the folder logos, which makes my _extension.yml look like this:
````
title: template
author: Simon Lidberg
version: 0.0.1
contributes:
format:
common:
nu... | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2022-08-26T11:02:09Z",
"creator": "verbalins",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 2141,
"state": "closed",
"title": "quarto template format-resources folder not removed in l... |
### Bug description
Change the default contents of index.qmd created in a new book project to:
````md
::: {.content-visible when-format="html"}
# Preface {.unnumbered}
This is a Quarto book.
To learn more about Quarto books visit <https://quarto.org/docs/books>.
:::
````
The compiled pdf file shows the c... | {
"assignee": "cscheid",
"comments": 7,
"created_at": "2022-08-26T09:08:48Z",
"creator": "verbalins",
"is_pull_request": false,
"labels": [
"bug",
"ast"
],
"locked": false,
"milestone": "v1.4",
"number": 2140,
"state": "open",
"title": "quarto book .content-visible ignored",
"url": "ht... |
### Bug description
When using the chalkboard feature and adding some annotations in a speaker view setting, the annotations are not mirrored to the main presentation.
This is an issue as usually one looks at the speaker view during a presentation on the laptop while the main audience looks at the mirrored slides b... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-26T07:58:52Z",
"creator": "pat-s",
"is_pull_request": false,
"labels": [
"bug",
"upstream"
],
"locked": false,
"milestone": "Future",
"number": 2139,
"state": "open",
"title": "Chalkboard: annotations in speaker view are not mirro... |
I set up a connection to a database but Quarto throws an error when rendering (not if I execute the chunk). The same code in Rmarkdown works smoothly.
```
library(dbplyr)
conn <- DBI::dbConnect(RMySQL::MySQL(),
host = "my_hostname",
user = "my_user",
password... | {
"assignee": null,
"comments": 7,
"created_at": "2022-08-26T07:37:35Z",
"creator": "jospueyo",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2145,
"state": "closed",
"title": "Problem when connecting to MySQL using environmental variables",
"url": "https:... |
### Bug description
Hello!
I can't find functions for automating list of tables, list of figures and list of abbreviations in quarto book. These functionalities would be very useful for technical and academic reports.
Best
Ko Ko Zaw
### Checklist
- [ ] Please include a minimal, fully reproducible example ... | {
"assignee": "cscheid",
"comments": 7,
"created_at": "2022-08-26T07:23:59Z",
"creator": "zawkzaw",
"is_pull_request": false,
"labels": [
"enhancement",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 2138,
"state": "open",
"title": "list of tables, list of figures and list... |
### Bug description
I'm redoing my website using a Quarto blog. When I have post set to eval: false with a SQL code chunk and an R code chunk, it looks fine. When I remove the R part, it changes formatting.
To reproduce, I have a blog post with each of these options:
1) Blog post without R chunk.
````
---
... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-26T00:37:26Z",
"creator": "WilliamTylerBradley",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 2137,
"state": "open",
"title": "SQL chucks appear different with R chunks when ... |
### Bug description
Using MS code, Anaconda with python 3.9.12, when selecting 'file new' if I select a .ipynb file it does nothing, however if I create a .qmb file, and then create a .ipynb it then appears. The MS code extensions I have installed are:
ms-toolsai.jupyter
ms-toolsai.jupyter-keymap
ms-toolsai.jup... | {
"assignee": "jjallaire",
"comments": 2,
"created_at": "2022-08-25T21:50:08Z",
"creator": "Eclecticdata",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "Future",
"number": 2135,
"state": "closed",
"title": "new ipynb file not appearing until... |
### Bug description
test code
````md
---
title: 'debug code fold'
format:
html:
code-fold: true
embed-resources: true
standalone: true
execute:
cache: false
echo: false
---
```{ojs}
1+1
```
````
output:
![image](https://user-images.githubusercontent.com/5415510/186770778-d... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-25T21:18:23Z",
"creator": "y9c",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2134,
"state": "closed",
"title": "code-fold still exist even if `echo` is set as false",
"url": "h... |
I've been doing a lot of work on the shell scripts, and there's been some headache around platform-specific syntax. I saw some of that in my conda days. The only real way to avoid the headache is to strive for POSIX compliance, which can be something of a headache unto itself.
The first part of this proposal is to:
... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-25T17:19:01Z",
"creator": "msarahan",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2128,
"state": "closed",
"title": "Proposal: posix compliance in shell scripts; native compiled launcher",
"url": ... |
<div type='discussions-op-text'>
<sup>Originally posted by **cbrnr** August 25, 2022</sup>
I created a website with `quarto create-project website --type website`. In `_quarto.yml` I changed the `theme` to `flatly` because the issue is more pronounced with this theme (but it also occurs with the default `cosmo` the... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-08-25T16:09:46Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2126,
"state": "closed",
"title": "Website text \"jumps\" when rendered",
"url": "https://g... |
e.g.
````markdown
```{python}
#| output: asis
%%javascript
// some JS code
```
````
This is because cell magics need to be the first line of the cell.
Note that the `keep-ipynb` feature is really designed for debugging rather than for producing a final notebook for distribution (e.g. markdown construc... | {
"assignee": "jjallaire",
"comments": 7,
"created_at": "2022-08-25T12:25:17Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 2123,
"state": "open",
"title": "keep-ipynb notebook with cell magics and yaml option... |
### Bug description
Currently in the doc for engine binding regarding computation chunk (https://quarto.org/docs/computations/execution-options.html#engine-binding) we have mention of two things regarding Markdown file :
* The table about auto-binding shows `.md` is supported, and no engine will be used
![imag... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-25T11:54:31Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": null,
"number": 2122,
"state": "closed",
"title": "Adapt the documentation about .md document with computation c... |
{
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-08-25T11:34:32Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [
"books"
],
"locked": false,
"milestone": "v1.3",
"number": 2120,
"state": "closed",
"title": "support globs for book chapter lists",
"url": "https... | |
Issue https://github.com/quarto-dev/quarto-cli/issues/2113 is a problem that I caused by not considering that symlinks to the quarto binary may be relative. Our dev configuration makes absolute path symlinks, and we don't otherwise have a check for this use case. It seems like we should add something to the CI process ... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-25T00:54:18Z",
"creator": "msarahan",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 2114,
"state": "open",
"title": "Need test for relative symlinks to Quarto",
"url": "https://github.com/quarto... |
### Bug description
I am currently maintaining a set of homebrew formulae (for MacOS) for both quarto and quarto-dev, a user just reported (rundel/homebrew-quarto-cli#37) that as of v1.1.113 they are getting an error when running quarto installed using this formula. Specifically,
```
> quarto preview
usage: basenam... | {
"assignee": null,
"comments": 6,
"created_at": "2022-08-25T00:03:55Z",
"creator": "rundel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2113,
"state": "closed",
"title": "SCRIPT_PATH discovery is broken for relative symlinks ",
"url": "htt... |
### Bug description
This bug is essentially #1141 but applied to citations in captions when using footnote citation styles. This Markdown doesn't work:
```md
---
csl: oxford-university-press-note.csl
---
![A schematic diagram of known types of viroid-like agents. This figure was published in [@Lee2021a].](fig... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-08-24T22:54:16Z",
"creator": "Benjamin-Lee",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2112,
"state": "closed",
"title": "Footnote-style citation in figure caption crashed PDF... |
Per previous conversations @cscheid --
Quarto websites are fantastic for individual websites, but features are lacking for group or organization websites. The Hugo Academic framework enabled a taxonomy across the site for aggregating publications by author in a seamless manner. Quarto Listings are a start to this but ... | {
"assignee": "cscheid",
"comments": 6,
"created_at": "2022-08-24T20:56:34Z",
"creator": "kmasiello",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.4",
"number": 2110,
"state": "open",
"title": "Better frameworks for organization-centric websites ",
"url": "https://g... |
### Bug description
Code:
````md
---
title: "test webpage"
format:
html:
code-fold: true
execute:
cache: true
jupyter: python3
---
```{python}
#| label: fig-demo
#| fig-cap: "This is a demo figure for debug"
from bokeh.io import output_notebook
output_notebook(hide_banner=True)
from... | {
"assignee": "cscheid",
"comments": 9,
"created_at": "2022-08-24T19:19:42Z",
"creator": "y9c",
"is_pull_request": false,
"labels": [
"bug",
"needs-discussion"
],
"locked": false,
"milestone": "v1.3",
"number": 2107,
"state": "closed",
"title": "A single bokeh plot will be wrongly identi... |
### Bug description
The ipynb may be there from keep-ipynb or just not cleaned up from a previous render error
### Checklist
- [ ] upgraded to the [latest nightly quarto version](https://github.com/quarto-dev/quarto-cli/releases)?
- [ ] [formatted your issue](https://yihui.org/issue/#please-format-your-issue-correct... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-24T17:02:21Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2101,
"state": "closed",
"title": "index.qmd and index.ipynb causes rendering error in website"... |
### Bug description
Hi, thank you for your amazing work.
I'm trying to add an audio file to my blog, and I get a Babushka-like bug: The audio is being rendered but every time a get another copy of "_site" inside the previous "_site" file.
I made a reprex of the problem:
### Rendered Blog (everything is workin... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-24T14:03:38Z",
"creator": "uriahf",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2097,
"state": "closed",
"title": "Adding audio file to quarto-blog creates \"_site\" new nest... |
I've seen many users put document level YAML options in the `project` and `website` keys. This does not get reported as an error b/c those schemas aren't closed. I think we need to close up schemas that can be right away as the longer we wait the more projects/documents will be broken when we do (or at the limit we can... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2022-08-24T13:53:16Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [
"yaml-validation"
],
"locked": false,
"milestone": "v1.1",
"number": 2096,
"state": "closed",
"title": "close yaml schemas that can be closed",
"url":... |
I've created a new Quarto book project. When I render the provided example in HTML format (without having made any changes), the search index appears to be incomplete.
Example: The file `intro.qmd` begins like this:
```
# Introduction
This is a book created from markdown and executable code.
See @knuth84 f... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-24T13:22:07Z",
"creator": "jderrfuss",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 2095,
"state": "closed",
"title": "search.json appears to be incomplete",
"url": "https://github.com/q... |
### Bug description
Take this example where we have a very wide code chunk
`````markdown
---
title: "Untitled"
format: revealjs
execute:
echo: true
---
## Slides 1
```{r}
#| output-location: column
library(ggplot2)
ggplot(airquality, aes(Temp, Ozone)) + geom_point() + geom_smooth(method = "loes... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-24T12:05:30Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 2093,
"state": "closed",
"title": "output-location to column does not work anymore for revealjs",... |
### Bug description
I don't know what `xfun::session_info()` is, hopefully the GH issue works without that?? (from the link with instructions to follow...)
I am following this tutorial:
https://quarto.org/docs/get-started/authoring/jupyter.html
and am using `nb_conda_kernel` to manage my Jupyter kernels from ... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-24T10:55:16Z",
"creator": "michaelaye",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2091,
"state": "closed",
"title": "quarto --execute ignores jupyter kernel name in yaml doc ... |
At https://quarto.org/docs/presentations/revealjs/presenting.html, there is a section on the Navigation Menu. It gives an example of the `side`, `width` and `number` options:
```
format:
revealjs:
side: right
width: wide
```
However, this does not seem to work. Autocompletion in the yaml header a... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-24T07:48:45Z",
"creator": "mathijsdeen",
"is_pull_request": false,
"labels": [
"enhancement",
"revealjs"
],
"locked": false,
"milestone": "Future",
"number": 3376,
"state": "open",
"title": "documentation error on navigation ... |
Really excited about quarto, but coming from blogdown/hugo world I'm struggling to understand how custom SASS themes work. In particular, I've read https://quarto.org/docs/output-formats/html-themes-more.html#bootswatch-sass-theme-files, which says:
> We’ve merged Bootswatch themes for Bootstrap 5 into this single ... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-24T00:35:56Z",
"creator": "cboettig",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2086,
"state": "closed",
"title": "Questions/ need more advice on extending themes ?",
"url": "https://github.com/... |
This came up in https://github.com/quarto-ext/code-filename/issues/4
Quarto allows to install from a file (https://quarto.org/docs/extensions/distributing.html#archive-files) but expect a specific structure. When downloading from Github source, there is a parent folder to the repo folder.
We could maybe check fo... | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2022-08-23T19:11:17Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug",
"extensions"
],
"locked": false,
"milestone": "v1.2",
"number": 2081,
"state": "closed",
"title": "Installing extension from Git archive repo... |
Tag @dragonstyle per discussion, here are the pre-release references. It might be helpful to formalize the strategy of if y'all do or do not want to indicate a minimum version when introducing new features that aren't backported.
Reference to 0.9: [Mermaid Diagrams](https://github.com/quarto-dev/quarto-web/blob/5a79... | {
"assignee": null,
"comments": 5,
"created_at": "2022-08-23T18:44:20Z",
"creator": "jthomasmock",
"is_pull_request": false,
"labels": [
"documentation",
"needs-discussion"
],
"locked": false,
"milestone": "v1.3",
"number": 4463,
"state": "closed",
"title": "Reference to old or pre-relea... |
Allowing variable overrides in batch scripts is hairy because of the need for complicated `startlocal enabledelayedexpansion` stuff. It makes our scripts fragile and limits the number of people who are willing to work on them. I propose that we cut `configure.cmd` completely, and run configure.sh on all platforms.
W... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-23T13:47:26Z",
"creator": "msarahan",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 2071,
"state": "open",
"title": "Proposal: use bash on windows for configure",
"url": "https://github.com/quar... |
### Bug description
I'm unable to schedule a cron job to automatically render/publish a quarto website. The command get executed but the log just shows an empty line (like the output you get when you just execute quarto without any parameter).
This is the entry in my cron schedule file (linux/debian). The exact sam... | {
"assignee": "jjallaire",
"comments": 2,
"created_at": "2022-08-23T09:42:54Z",
"creator": "fabiogiglietto",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2066,
"state": "closed",
"title": "Schedule quarto publish with cron",
"url": "https:/... |
When using `quarto` to build websites, some static site generators, for instance `mkdocs`, create sites with "pretty" URLs by default. It would be great if Quarto also did this.
For instance, in a project containing the file `science.md`, `quarto render` will generate that as `science.html`, resulting in a URL like,... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-23T09:02:29Z",
"creator": "sellorm",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 2065,
"state": "open",
"title": "Quarto should output websites with \"pretty\" URLs",
"url... |
I find the ability to insert tikz pictures by simply calling `{#label}` when rendering to PDF to be extremely elegant and practical, unfortunately the pictures do not seem to render for HTML outputs.
Trying to find a workaround I found the [TikZJax](https://github.com/kisonecat/tikzjax) libr... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-23T07:41:08Z",
"creator": "Matrsz",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 2064,
"state": "open",
"title": "Feature Request: Rendering TikZ pictures for HTML output",
... |
Currently the callout blocks visible text stays the same if the block is collapsed or expanded, like here:
Collapsed:
<img width="773" alt="image" src="https://user-images.githubusercontent.com/32404415/186082810-09ec1c12-fe70-4704-850f-d0e34c7d2410.png">
Expanded:
<img width="770" alt="image" src="https://user-ima... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-23T06:10:17Z",
"creator": "miwojc",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 2063,
"state": "open",
"title": "[feature request] change visible text for callout blocks whe... |
### Bug description
When I choose `revealjs` as a `format` for a `qmd` document, it does not render `width` variable from `ojs` properly.
````{qmd}
---
format: revealjs
---
## DEMO
```{ojs}
md`${width}`
```
````
![image](https://user-images.githubusercontent.com/10469752/186004708-b1e97dbf-8c70-4f34-8035-3... | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2022-08-22T19:45:45Z",
"creator": "kwangkim",
"is_pull_request": false,
"labels": [
"bug",
"ojs-engine"
],
"locked": false,
"milestone": "v1.2",
"number": 2058,
"state": "closed",
"title": "[revealjs] ojs runtime error: Cannot read p... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/2056
<div type='discussions-op-text'>
<sup>Originally posted by **Hedonical** August 22, 2022</sup>
Hi everyone,
I am trying to make it so only the header of a section is centered and center text as seen in the live editor view:
![Screensh... | {
"assignee": null,
"comments": 7,
"created_at": "2022-08-22T18:51:32Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2057,
"state": "closed",
"title": "How to stop CSS styling of a header applying to entire section?",
"url": "https:... |
I have created a Blog and I use Github Pages to deploy it.
However, my blog struggles to get updated on the web when I have modified something in an old post.
What I do, is that I push the changes to the main repo and then I go to the terminal and just type the usual command: `quarto publish `
I have tried t... | {
"assignee": null,
"comments": 9,
"created_at": "2022-08-22T17:35:24Z",
"creator": "ghost",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 2055,
"state": "closed",
"title": "Deployment with Github Pages ",
"url": "https://gi... |
Fixes `colorlinks` issue in pdf output | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-22T17:08:11Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 2054,
"state": "closed",
"title": "Update pandoc template to 2.19.1",
"url": "https://g... |
### Bug description
It is [documented](https://quarto.org/docs/computations/r.html#chunk-options) that `!expr` works with `fig-cap`, but it doesn't work with `fig-subcap`.
````md
```{r}
#| label: fig-charts
#| fig-cap: Charts
#| fig-subcap: !expr c("First", "Second")
plot(cars)
plot(pressure)
```
````
... | {
"assignee": null,
"comments": 6,
"created_at": "2022-08-22T15:25:06Z",
"creator": "svraka",
"is_pull_request": false,
"labels": [
"bug",
"yaml-validation"
],
"locked": false,
"milestone": "Future",
"number": 2047,
"state": "open",
"title": "Evaluating R code with `!expr` in `fig-subcap... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/2043
<div type='discussions-op-text'>
<sup>Originally posted by **maelle** August 22, 2022</sup>
Say I have a chapter file called `abb-blurb.qmd`.
How can I make the corresponding HTML file something else than `abb-blurb.HTML`? Do I need to... | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2022-08-22T15:13:09Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 2045,
"state": "closed",
"title": "How to change the rendered file path in Quarto books",
"url": "http... |
### Bug description
This is a minimal sample project.
[quarto_minimal.zip](https://github.com/quarto-dev/quarto-cli/files/9394347/quarto_minimal.zip)
The post content is simply:
````qmd
---
title: test
---
```{r}
plot(1)
```
````
The rendered site will not display the picture stated in post.
![... | {
"assignee": "dragonstyle",
"comments": 9,
"created_at": "2022-08-22T12:40:13Z",
"creator": "psychelzh",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 2042,
"state": "closed",
"title": "For website project, images generated by R code does not... |
See discussion and example in https://github.com/quarto-dev/quarto-cli/issues/1581
In short, some **knitr** option could be useful with other computation engine and this require broader Quarto support
This could maybe even be done using Lua filter in an extension (TBC) | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-22T07:49:51Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 2040,
"state": "open",
"title": " Consider support for `class.source` `class.output` `attr.source` `attr.output` eq... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/2003
<div type='discussions-op-text'>
<sup>Originally posted by **andrewcstewart** August 19, 2022</sup>
Looking under the list of formats under https://quarto.org/docs/output-formats/all-formats.html, one format that would be nice to add is C... | {
"assignee": "allenmanning",
"comments": 3,
"created_at": "2022-08-22T07:05:16Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.3",
"number": 2038,
"state": "closed",
"title": "Publish to Confluence",
"url": "https://gi... |
### Bug description
````markdown
---
title: "test"
format:
html:
self-contained: true
keep-md: true
---
```{r}
plot(mtcars)
```
````
This will produce with quarto 1.1.107 on the RStudio Viewer preview pane on Windows
![image](https://user-images.githubusercontent.com/6791940/185857724-7c622... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-22T06:56:20Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2037,
"state": "closed",
"title": "self-contained document have broken images",
"url": "https://github.c... |
Hi,
I was running a simple Quarto document that just takes the mean of `c(1,2,3)` and wanted to know how `code-link` and `code-line-numbers` work.
The versions are Quarto 1.0.11, R 4.2.1 and RStudio 2022.07.1 Build 554.
Hopefully the issue reported can be reproduced.
I understand that both R packages `downl... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-22T04:55:25Z",
"creator": "JauntyJJS",
"is_pull_request": false,
"labels": [
"bug",
"upstream"
],
"locked": false,
"milestone": "Future",
"number": 2036,
"state": "open",
"title": "`code-link` and `code-line-numbers` does not work... |
### Bug description
I keep getting the error "\Quarto\bin\ was unexpected at this time" when trying to use a fresh install of Quarto.
The only command I have found so far that works is "quarto -- version" which outputs:
"1.0.38"
Windows 10
Version 10.0.19044 Build 19044
I have verified that quarto ... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-22T04:37:27Z",
"creator": "kpjmcg",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2035,
"state": "closed",
"title": "\"\\Quarto\\bin\\ was unexpected at this time\" error for all commands... |
### Bug description
More a question than a bug but wondering if I have multiple Jupyter Notebooks in my project, each of those with different figures that I would like to reference from other notebook, how can I do that?
In the "testing copy.ipynb" notebook I put two cross references: @fig-plot and @fig-plot-copy... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-22T00:43:47Z",
"creator": "lgonzalezsa",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2034,
"state": "closed",
"title": "How to cross reference figures from distinct Jupyter Notebooks ?"... |
### Bug description
Creating quarto website with a Jupyter Notebook using Python [Holoviz](https://holoviz.org/) plot but getting `Unable to display output for mime type(s):`
I also tested seaborn package and the plots render properly.
Do I need to configure a property for Holoviz plots to render properly wit... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-22T00:07:04Z",
"creator": "lgonzalezsa",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2033,
"state": "closed",
"title": "Quarto not rendering Holoviz plots | Unable to display output for... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/2030
<div type='discussions-op-text'>
<sup>Originally posted by **lukefullard** August 21, 2022</sup>
Hi,
I'm trying to add a table to my quarto document using the [Panel Tabulator widget](https://panel.holoviz.org/reference/widgets/Tabulat... | {
"assignee": "jjallaire",
"comments": 3,
"created_at": "2022-08-21T21:09:33Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 2031,
"state": "closed",
"title": "Warning: \"Unable to display output for mime type(s)\"",
"url": "http... |
### Bug description
````markdown
---
title: "test"
format: docx
---
:::{.callout-caution}
## Running Code
```{r}
1 + 1
```
:::
````
This causes this issue :
````bash
An error occurred
Found a nested callout in the document. Please fix this issue and try again.
````
This does not happen ... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-21T15:38:13Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug",
"verify-fixed"
],
"locked": false,
"milestone": null,
"number": 2027,
"state": "closed",
"title": "Nested callout error in Docx when include ... |
Tracking issue for this PR: https://github.com/quarto-dev/quarto-cli/pull/2015 | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-21T13:12:42Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 2025,
"state": "closed",
"title": "merge conda PR",
"url": "https://github.com/quarto-dev/quarto-cli/iss... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/2009
@dragonstyle You should read to the bottom of the discussion to see the clearest explanation of what the bug is.
<div type='discussions-op-text'>
<sup>Originally posted by **sammo3182** August 19, 2022</sup>
Recently I asked a question... | {
"assignee": "dragonstyle",
"comments": 5,
"created_at": "2022-08-21T13:04:30Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.4",
"number": 2024,
"state": "open",
"title": "Varying the reference position in `quarto-journals` template",
"url":... |
### Bug description
Would be great if collapsed sections would be accessible for follow hints, for example in qutebrowser or vimium/vimium-FF
In this screenshot the collapsed section doesn't get it's own follow hint, making it not possible to navigate to it without mose. This website was generated by quarto from... | {
"assignee": "jooyoungseo",
"comments": 0,
"created_at": "2022-08-21T12:10:32Z",
"creator": "miwojc",
"is_pull_request": false,
"labels": [
"bug",
"accessibility"
],
"locked": false,
"milestone": "v1.4",
"number": 2023,
"state": "open",
"title": "Add follow hint to collapsed section",
... |
It's fairly common for data scientists to produce reports which end up in Google Slides and it would be great if there were a pattern which let them use quarto to generate these slides. I know that people have asked for this in the Rmarkdown world and it was tricky to implement, but I was wondering if it would be poss... | {
"assignee": null,
"comments": 6,
"created_at": "2022-08-20T23:13:26Z",
"creator": "GShotwell",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 2022,
"state": "open",
"title": "Feature request: Google slides output",
"url": "https://github.com/quarto-de... |
Hi,
just getting started with quarto (thanks), and not sure I've got the jupyter side of things sorted out. I think I've installed the irkernel for R okay. but am struggling to convert a .qmd file to .ipynb.
Running 'quarto check' in the folder I see the error (at bottom):
```
stephen@blur estimateq % quarto ... | {
"assignee": null,
"comments": 5,
"created_at": "2022-08-20T22:28:04Z",
"creator": "sje30",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 2020,
"state": "closed",
"title": "ERROR: Invalid jupyter YAML metadata found in file (must be string or object)",
"u... |
### Bug description
The "On this page" table of contents drop down menu sometimes glitches in and out when scrolling through a part of the page with margin elements.
Here's an example from the Quarto website: [https://quarto.org/docs/authoring/article-layout.html]()
with a screen recording of the behavior:
ht... | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2022-08-20T19:18:01Z",
"creator": "maxdrohde",
"is_pull_request": false,
"labels": [
"bug",
"duplicate",
"verify-fixed"
],
"locked": false,
"milestone": "v1.1",
"number": 2019,
"state": "closed",
"title": "\"On this page\" me... |
RStudio 2022.07.1 Build 554
OS Mac M1 Air
### Bug description
What happens depends on the document class. Described below.
If one passes in `hyperrefoptions: `
```
pdf:
documentclass: scrbook
keep-tex: true
hyperrefoptions:
- "colorlinks=true"
- "linkcolor=blue"
- "u... | {
"assignee": "dragonstyle",
"comments": 10,
"created_at": "2022-08-20T16:48:21Z",
"creator": "eeholmes",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.2",
"number": 2017,
"state": "closed",
"title": "For PDF, hyperrefoptions being overridden by \\hypersetu... |
I am trying to replicate the example shown here : https://quarto.org/docs/interactive/ojs/ but instead of using the csv file I am using the penguins data set and I am not able to get the plots showing up when I used the transpose function but it work when I use the csv file found [here](https://github.com/quarto-dev/qu... | {
"assignee": "cscheid",
"comments": 5,
"created_at": "2022-08-20T16:45:34Z",
"creator": "meldarionqeusse",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 2018,
"state": "closed",
"title": "ObservableJS penguins exmaple does not work with transpose but work... |
### Bug description
Setting either `none-in` or `none-out` results in fading instead of nothing.
Reprex:
````md
---
format: revealjs
---
## slide 1
## slide 2 {transition="none-in none-out"}
## slide 3
````
results:
![Kapture 2022-08-20 at 18 22 37](https://user-images.githubusercontent.c... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-20T16:27:23Z",
"creator": "EmilHvitfeldt",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 2016,
"state": "closed",
"title": "Setting transition=\"none-*\" turns on fading",
"url": "https... |
### Bug description
**distill** has also a `layout` option, and for now if the option is not correctly converted to Quarto supported one then there is an useful error
* Content from distill without using YAML syntax
````markdown
---
title: "A small example"
format: html
page-layout: article
---
```{r se... | {
"assignee": "cscheid",
"comments": 8,
"created_at": "2022-08-20T13:21:25Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"enhancement",
"yaml-validation"
],
"locked": false,
"milestone": "Future",
"number": 2013,
"state": "open",
"title": "Improve validation for layout to ... |
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