Upload assemble.py

assemble.py

@@ -0,0 +1,66 @@
+import h5py
+import numpy as np
+import argparse
+import os
+
+CHUNK_SHAPE = 4_000
+NSW = 128_000
+TRACE_LENGHT = 200_000
+
+if __name__ == '__main__':
+
+    parser = argparse.ArgumentParser()
+    parser.add_argument("-dd", "--dataset_dir", required=True,
+                        help="Directory containing the dataset chunks")
+    args = vars(parser.parse_args())
+    dataset_dir = args['dataset_dir']
+
+    # Create virtual layouts for profiling and attack traces, labels, and metadata
+    profile_traces_layout = h5py.VirtualLayout(
+        shape=(NSW, TRACE_LENGHT), dtype=np.float32)
+    attack_traces_layout = h5py.VirtualLayout(
+        shape=(NSW, TRACE_LENGHT), dtype=np.float32)
+
+    dt = h5py.vlen_dtype(np.uint32)
+    label_dtype = np.dtype([('sample', dt), ('frequency', dt)])
+    profile_labels_layout = h5py.VirtualLayout(shape=(NSW,), dtype=label_dtype)
+    attack_labels_layout = h5py.VirtualLayout(shape=(NSW,), dtype=label_dtype)
+
+    dt = np.dtype([('key', np.uint8, (16,)), ('plaintext', np.uint8, (16,))])
+    profile_meta_layout = h5py.VirtualLayout(shape=(NSW,), dtype=dt)
+    attack_meta_layout = h5py.VirtualLayout(shape=(NSW,), dtype=dt)
+
+    # Iterate over the chunks and assign virtual sources to the layouts
+    for n in range(NSW//CHUNK_SHAPE):
+        filename = os.path.join(dataset_dir, f'dfs_desynch_chunk_{n}.h5')
+        profile_traces_layout[n*CHUNK_SHAPE:(n+1)*CHUNK_SHAPE] = h5py.VirtualSource(
+            filename, 'profiling/traces', shape=(CHUNK_SHAPE, TRACE_LENGHT))
+        attack_traces_layout[n*CHUNK_SHAPE:(n+1)*CHUNK_SHAPE] = h5py.VirtualSource(
+            filename, 'attack/traces', shape=(CHUNK_SHAPE, TRACE_LENGHT))
+
+        profile_labels_layout[n*CHUNK_SHAPE:(n+1)*CHUNK_SHAPE] = h5py.VirtualSource(
+            filename, 'profiling/labels', shape=(CHUNK_SHAPE,))
+        attack_labels_layout[n*CHUNK_SHAPE:(n+1)*CHUNK_SHAPE] = h5py.VirtualSource(
+            filename, 'attack/labels', shape=(CHUNK_SHAPE,))
+
+        profile_meta_layout[n*CHUNK_SHAPE:(n+1)*CHUNK_SHAPE] = h5py.VirtualSource(
+            filename, 'profiling/metadata', shape=(CHUNK_SHAPE,))
+        attack_meta_layout[n*CHUNK_SHAPE:(n+1)*CHUNK_SHAPE] = h5py.VirtualSource(
+            filename, 'attack/metadata', shape=(CHUNK_SHAPE,))
+
+    # Add virtual dataset to output file
+    dfs_desynch_path = os.path.join(dataset_dir, 'dfs_desynch.h5')
+    with h5py.File(dfs_desynch_path, 'w', libver='latest') as f:
+        profiling_group = f.create_group('profiling')
+        attack_group = f.create_group('attack')
+
+        # Create virtual datasets within the groups
+        profiling_group.create_virtual_dataset('traces', profile_traces_layout)
+        profiling_group.create_virtual_dataset('labels', profile_labels_layout)
+        profiling_group.create_virtual_dataset('metadata', profile_meta_layout)
+
+        attack_group.create_virtual_dataset('traces', attack_traces_layout)
+        attack_group.create_virtual_dataset('labels', attack_labels_layout)
+        attack_group.create_virtual_dataset('metadata', attack_meta_layout)
+
+    print(f"DFS_DESYNCH dataset assembled in {dfs_desynch_path}")