Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/reframe-hpc__reframe__0.0 && ls -R
.:
CONTRIBUTING.md       bin           hpctestlib        share
Jenkinsfile           bootstrap.sh  pyproject.toml    test_reframe.py
LICENSE               ci-scripts    reframe           tools
README.md             config        requirements.txt  tutorials
ReFrame_HPC.egg-info  docs          setup.cfg         unittests

./ReFrame_HPC.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./bin:
reframe

./ci-scripts:
ci-runner.bash  configs  deploy.sh  dockerfiles  genrelnotes.py

./ci-scripts/configs:
lmod.py  spack.py  tmod32.py  tmod4.py

./ci-scripts/dockerfiles:
Lmod-base.dockerfile    Spack.dockerfile        Tmod4.dockerfile
Lmod.dockerfile         Tmod32-base.dockerfile  tutorials.dockerfile
Lmod77-base.dockerfile  Tmod32.dockerfile
Lmod77.dockerfile       Tmod4-base.dockerfile

./config:
cscs-ci.py

./docs:
Makefile                            pipeline.rst
_static                             programming_apis.rst
_templates                          regression_test_api.rst
conf.py                             requirements.txt
config_reference.rst                started.rst
configure.rst                       topics.rst
deferrable_functions_reference.rst  tutorial_advanced.rst
deferrables.rst                     tutorial_basics.rst
dependencies.rst                    tutorial_build_automation.rst
exceptions.rst                      tutorial_deps.rst
hpctestlib.rst                      tutorial_fixtures.rst
index.rst                           tutorial_flux.rst
listings                            tutorial_tips_tricks.rst
manpage.rst                         tutorials.rst
manuals.rst                         utility_functions_reference.rst
migration_2_to_3.rst

./docs/_static:
fonts  img

./docs/_static/fonts:
Lato-Bold.ttf        RobotoSlab-Light.ttf    RobotoSlab-Thin.ttf
RobotoSlab-Bold.ttf  RobotoSlab-Regular.ttf  fontawesome-webfont.woff2

./docs/_static/img:
async-exec-policy.svg            reframe-test-cases.svg
deferrable-evaluation.svg        reframe_logo-full.png
deps-complex.svg                 reframe_logo-width400p.png
favicon.png                      regression-task-state-machine.svg
fixtures-actual-deps-scoped.svg  serial-exec-policy.svg
fixtures-actual-deps.svg         test-deps-by-case.svg
fixtures-conceptual-deps.svg     test-deps-by-env.svg
gitlab-ci.png                    test-deps-by-part.svg
gromacs-perf.png                 test-deps-by-xcase.svg
logo_cscs.png                    test-deps-by-xenv.svg
logo_ethz.png                    test-deps-by-xpart.svg
output-scanning.pdf              test-deps-custom.svg
output-scanning.png              test-deps-cycle.svg
pipeline.svg                     test-deps-fully.svg
reframe-logo-dark-bg.png         test-deps.svg

./docs/_templates:
breadcrumbs.html  footer.html  layout.html

./docs/listings:
alltests_daint.txt                   osu_bandwidth_concretized_daint_nvidia.txt
deps_complex_run.txt                 osu_bench_deps.txt
deps_rerun_t6.txt                    osu_bench_fixtures_list.txt
deps_run_t6.txt                      osu_bench_fixtures_run.txt
hello1.txt                           osu_bench_list_concretized.txt
hello2.txt                           osu_bench_list_concretized_gnu.txt
hello2_catalina.txt                  osu_latency_list.txt
hello2_list_verbose.txt              osu_latency_unresolved_deps.txt
hello2_print_stdout.txt              param_deps_list.txt
hello2_typo.txt                      perflogs.txt
hello2_typo_stacktrace.txt           run-report.json
hello2_verbose_load.txt              stream1.txt
hellomp1.txt                         stream3_failure_only.txt
hellomp2.txt                         stream4_daint.txt
maketest_mixin.txt                   stream_params.txt
osu_bandwidth_concretized_daint.txt

./hpctestlib:
data_analytics  interactive  microbenchmarks  ml  python  sciapps

./hpctestlib/data_analytics:
spark

./hpctestlib/data_analytics/spark:
spark_checks.py  src

./hpctestlib/data_analytics/spark/src:
spark_pi.py

./hpctestlib/interactive:
jupyter

./hpctestlib/interactive/jupyter:
ipcmagic

./hpctestlib/interactive/jupyter/ipcmagic:
__init__.py  src

./hpctestlib/interactive/jupyter/ipcmagic/src:
tf-hvd-sgd-ipc-tf2.ipynb

./hpctestlib/microbenchmarks:
gpu  mpi

./hpctestlib/microbenchmarks/gpu:
dgemm  gpu_burn.py  kernel_latency  memory_bandwidth  pointer_chase  shmem  src

./hpctestlib/microbenchmarks/gpu/dgemm:
__init__.py  src

./hpctestlib/microbenchmarks/gpu/dgemm/src:
Xdevice  makefile.cuda  makefile.hip  xgemm.cu

./hpctestlib/microbenchmarks/gpu/kernel_latency:
__init__.py  src

./hpctestlib/microbenchmarks/gpu/kernel_latency/src:
Xdevice  kernel_latency.cu  makefile.cuda  makefile.hip

./hpctestlib/microbenchmarks/gpu/memory_bandwidth:
__init__.py  src

./hpctestlib/microbenchmarks/gpu/memory_bandwidth/src:
Xdevice        makefile.cuda  memory_bandwidth.cu
bandwidth.hpp  makefile.hip   types.hpp

./hpctestlib/microbenchmarks/gpu/pointer_chase:
__init__.py  src

./hpctestlib/microbenchmarks/gpu/pointer_chase/src:
Xdevice          makefile.cuda  pointer_chase.cu
linked_list.hpp  makefile.hip   run_full_chase.sh

./hpctestlib/microbenchmarks/gpu/shmem:
__init__.py  src

./hpctestlib/microbenchmarks/gpu/shmem/src:
Xdevice  makefile.cuda  makefile.hip  shmem.cu

./hpctestlib/microbenchmarks/gpu/src:
common  gpu_burn

./hpctestlib/microbenchmarks/gpu/src/common:
Xdevice

./hpctestlib/microbenchmarks/gpu/src/common/Xdevice:
blas.hpp  common  cuda  defaults.hpp  hip  runtime.hpp  smi.hpp

./hpctestlib/microbenchmarks/gpu/src/common/Xdevice/common:
smi.hpp

./hpctestlib/microbenchmarks/gpu/src/common/Xdevice/cuda:
blas.hpp  include.hpp  smi.hpp  types.hpp  utils.hpp

./hpctestlib/microbenchmarks/gpu/src/common/Xdevice/hip:
blas.hpp  include.hpp  smi.hpp  types.hpp  utils.hpp

./hpctestlib/microbenchmarks/gpu/src/gpu_burn:
Xdevice  gpu_burn.cu  makefile.cuda  makefile.hip

./hpctestlib/microbenchmarks/mpi:
osu.py

./hpctestlib/ml:
pytorch  tensorflow

./hpctestlib/ml/pytorch:
horovod.py

./hpctestlib/ml/tensorflow:
horovod.py

./hpctestlib/python:
numpy

./hpctestlib/python/numpy:
numpy_ops.py  src

./hpctestlib/python/numpy/src:
np_ops.py

./hpctestlib/sciapps:
amber  gromacs

./hpctestlib/sciapps/amber:
nve.py

./hpctestlib/sciapps/gromacs:
benchmarks.py

./reframe:
__init__.py  core  frontend  schemas  utility

./reframe/core:
backends.py      deferrable.py    launchers      pipeline.py  variables.py
buildsystems.py  environments.py  logging.py     runtime.py   warnings.py
builtins.py      exceptions.py    meta.py        schedulers
config.py        fields.py        modules.py     settings.py
containers.py    fixtures.py      namespaces.py  shell.py
decorators.py    hooks.py         parameters.py  systems.py

./reframe/core/launchers:
__init__.py  local.py  mpi.py  ssh.py

./reframe/core/schedulers:
__init__.py  local.py  oar.py  registry.py  slurm.py
flux.py      lsf.py    pbs.py  sge.py

./reframe/frontend:
__init__.py    ci.py            executors   printer.py     testgenerators.py
argparse.py    cli.py           filters.py  runreport.py
autodetect.py  dependencies.py  loader.py   statistics.py

./reframe/frontend/executors:
__init__.py  policies.py

./reframe/schemas:
config.json  junit.xsd  runreport.json

./reframe/utility:
__init__.py  cpuinfo.py  osext.py    sanity.py     udeps.py
color.py     jsonext.py  profile.py  typecheck.py  versioning.py

./share:
completions

./share/completions:
reframe.bash  reframe.fish  reframe.tcsh

./tools:
gendoclistings.py  plot_pipeline_progress.py

./tutorials:
advanced  build_systems  cscs-webinar-2022  fixtures
basics    config         deps               flux

./tutorials/advanced:
affinity    flexnodes  library    multilaunch    random
containers  jobopts    makefiles  parameterized  runonly

./tutorials/advanced/affinity:
affinity.py

./tutorials/advanced/containers:
container_test.py  gromacs_test.py

./tutorials/advanced/flexnodes:
flextest.py

./tutorials/advanced/jobopts:
eatmemory.py  src

./tutorials/advanced/jobopts/src:
eatmemory.c

./tutorials/advanced/library:
lib  usr

./tutorials/advanced/library/lib:
__init__.py  src

./tutorials/advanced/library/lib/src:
get_os_release.sh

./tutorials/advanced/library/usr:
container_test.py

./tutorials/advanced/makefiles:
maketest.py  maketest_mixin.py  src

./tutorials/advanced/makefiles/src:
Makefile  dotprod.cpp

./tutorials/advanced/multilaunch:
multilaunch.py

./tutorials/advanced/parameterized:
stream.py

./tutorials/advanced/random:
prepostrun.py  randint.py  src

./tutorials/advanced/random/src:
limits.sh  random_numbers.sh

./tutorials/advanced/runonly:
echorand.py

./tutorials/basics:
hello  hellomp  stream

./tutorials/basics/hello:
hello1.py  hello2.py  src

./tutorials/basics/hello/src:
hello.c  hello.cpp

./tutorials/basics/hellomp:
hellomp1.py  hellomp2.py  hellomp3.py  src

./tutorials/basics/hellomp/src:
hello_threads.cpp

./tutorials/basics/stream:
stream1.py  stream2.py  stream3.py  stream4.py

./tutorials/build_systems:
easybuild  spack

./tutorials/build_systems/easybuild:
eb_test.py

./tutorials/build_systems/spack:
spack_test.py

./tutorials/config:
eum21.py  settings.py

./tutorials/cscs-webinar-2022:
config  cscs-webinar-2022.cast  tests

./tutorials/cscs-webinar-2022/config:
mysettings.py

./tutorials/cscs-webinar-2022/tests:
src         stream2.py  stream4.py  stream6.py  stream8.py
stream1.py  stream3.py  stream5.py  stream7.py  stream9.py

./tutorials/cscs-webinar-2022/tests/src:
stream.c

./tutorials/deps:
osu_benchmarks.py  parameterized.py

./tutorials/fixtures:
osu_benchmarks.py

./tutorials/flux:
Dockerfile  README.md  example1.py  settings.py

./unittests:
__init__.py           test_dependencies.py  test_policies.py
conftest.py           test_environments.py  test_profiler.py
modules               test_exceptions.py    test_sanity_functions.py
resources             test_fields.py        test_schedulers.py
test_argparser.py     test_filters.py       test_shell.py
test_autodetect.py    test_fixtures.py      test_testgenerators.py
test_buildsystems.py  test_launchers.py     test_typecheck.py
test_ci.py            test_loader.py        test_utility.py
test_cli.py           test_logging.py       test_variables.py
test_color.py         test_meta.py          test_versioning.py
test_config.py        test_modules.py       test_warnings.py
test_containers.py    test_parameters.py    utility.py
test_deferrable.py    test_pipeline.py

./unittests/modules:
testmod_bar  testmod_base  testmod_boo  testmod_ext  testmod_foo

./unittests/resources:
checks  checks_unlisted  settings.py  settings_old_syntax.py

./unittests/resources/checks:
bad            frontend_checks.py  hellocheck_copy.py  pinnedcheck.py
emptycheck.py  hellocheck.py       hellocheck_make.py  src

./unittests/resources/checks/bad:
abstract_check.py  invalid_check.py  notacheck.py  relative_imports.py

./unittests/resources/checks/src:
Makefile  compiler_failure.c  hello.c   homer.txt
code      compiler_warning.c  hello.sh  sleep_deeply.sh

./unittests/resources/checks/src/code:
Makefile

./unittests/resources/checks_unlisted:
bad_init_check.py   deps_simple.py   fixtures_complex.py      kbd_interrupt.py
deprecated_test.py  distribute.py    fixtures_simple.py
deps_complex.py     externalvars.py  invalid_syntax_check.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/reframe-hpc__reframe__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -R /workspace/mozman__svgwrite__0.0
/workspace/mozman__svgwrite__0.0:
LICENSE.TXT  README.rst  issues      setup.cfg  svgwrite.egg-info
MANIFEST.in  doc         makedata    setup.py   tests
NEWS.rst     examples    pytest.ini  svgwrite   tox.ini

/workspace/mozman__svgwrite__0.0/doc:
Makefile    attributes  conf.py     index.rst  overview.rst   svgwrite.rst
_templates  classes     extensions  make.bat   reference.rst  utils

/workspace/mozman__svgwrite__0.0/doc/_templates:
layout.html

/workspace/mozman__svgwrite__0.0/doc/attributes:
animation_addition.rst  animation_value.rst         graphical_event.rst
animation_events.rst    conditional_processing.rst  presentation.rst
animation_target.rst    core.rst                    xlink.rst
animation_timing.rst    document_event.rst

/workspace/mozman__svgwrite__0.0/doc/classes:
animate.rst                fe_lights.rst             masking.rst
base.rst                   fe_merge.rst              mixins.rst
defs.rst                   fe_morphology.rst         path.rst
drawing.rst                fe_offset.rst             pattern.rst
fe_blend.rst               fe_specular_lighting.rst  script.rst
fe_color_matrix.rst        fe_tile.rst               shapes.rst
fe_component_transfer.rst  fe_turbulence.rst         solidcolor.rst
fe_composite.rst           filter_primitive.rst      style.rst
fe_convolve_matrix.rst     filters.rst               svg.rst
fe_diffuse_lighting.rst    gradients.rst             symbol.rst
fe_displacement_map.rst    group.rst                 text.rst
fe_flood.rst               hyperlink.rst             use.rst
fe_gaussian_blur.rst       image.rst
fe_image.rst               marker.rst

/workspace/mozman__svgwrite__0.0/doc/extensions:
inkscape.rst

/workspace/mozman__svgwrite__0.0/doc/utils:
utils.rst

/workspace/mozman__svgwrite__0.0/examples:
LSystem.py          inkscape_drawing.py  runall.sh
basic_shapes.py     koch_snowflake.py    runall3.bat
basic_shapes.svg    linearGradient.py    simple_text.py
checkerboard.py     ltattrie             solidcolor.py
clickable_image.py  mandelbrot.py        use.py
defs_test.py        marker.py            using_bitmap_images.py
fePointLight.py     pattern.py           using_fonts.py
fonts               radialGradient.py    using_inkscape_extension.py
hyperlink.py        runall.bat           using_shapes_extension.py

/workspace/mozman__svgwrite__0.0/examples/fonts:
IndieFlower.ttf  OFL.txt

/workspace/mozman__svgwrite__0.0/examples/ltattrie:
bezier.py                    tenticles.py
circle_blur.py               text_font_generic_family.py
color_names.py               text_font_size.py
color_triangles_function.py  text_justify.py
length_units.py              tiling_part_1.py
line_cap_join.py             tiling_part_2.py
rgb.txt                      tiling_part_3.py
runall.bat                   tiling_part_4.py
runall.sh                    tiling_part_5.py
runall3.bat                  xkcd_colour_data_svgwrite_3.py

/workspace/mozman__svgwrite__0.0/issues:
'2017-01-24 issue 1 text-decoration'  '2017-02-27 markers'

'/workspace/mozman__svgwrite__0.0/issues/2017-01-24 issue 1 text-decoration':
test_issue_1.py

'/workspace/mozman__svgwrite__0.0/issues/2017-02-27 markers':
marker.py

/workspace/mozman__svgwrite__0.0/makedata:
SVG11Full_propertyTable.html   full11attributes.py  oldfull11data.py
SVG12Tiny_attributeTable.html  full11elements.py    tiny12attributes.py
SVG12Tiny_elementTable.html    makefull11data.py    tiny12elements.py
cache.py                       maketiny12data.py    tiny12typechecker.py

/workspace/mozman__svgwrite__0.0/svgwrite:
__init__.py   drawing.py         gradients.py  path.py        utils.py
animate.py    elementfactory.py  image.py      pattern.py     validator2.py
base.py       etree.py           masking.py    shapes.py      version.py
container.py  extensions         mixins.py     solidcolor.py
data          filters.py         params.py     text.py

/workspace/mozman__svgwrite__0.0/svgwrite/data:
__init__.py  full11.py   svgparser.py  typechecker.py
colors.py    pattern.py  tiny12.py     types.py

/workspace/mozman__svgwrite__0.0/svgwrite/extensions:
__init__.py  inkscape.py  shapes.py

/workspace/mozman__svgwrite__0.0/svgwrite.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  top_level.txt

/workspace/mozman__svgwrite__0.0/tests:
test_animate.py                  test_parsing_basic_types.py
test_animation_timing_parser.py  test_path.py
test_base_element.py             test_pathdataparser.py
test_circle.py                   test_pattern.py
test_clippath.py                 test_polyline.py
test_clipping.py                 test_presentation.py
test_clock_val_parser.py         test_pretty_xml.py
test_defs.py                     test_rect.py
test_description.py              test_script.py
test_drawing.py                  test_shapes_extension.py
test_elementfactory.py           test_solid_color.py
test_ellipse.py                  test_style.py
test_filters.py                  test_svg.py
test_full11_typechecker.py       test_svgattributes.py
test_gradients.py                test_symbol.py
test_group.py                    test_text.py
test_hyperlink.py                test_textarea.py
test_image.py                    test_tiny12_typechecker.py
test_inkscape_extension.py       test_transform.py
test_line.py                     test_transformlistparser.py
test_marker_class.py             test_use.py
test_markers_mixin.py            test_utils.py
test_mask.py                     test_validator2.py
test_mediagroup.py               test_viewbox.py
test_parameter.py                test_xlink.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/mozman__svgwrite__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/adtzlr__felupe__0.0 && ls -R
.:
CHANGELOG.md  CODE_OF_CONDUCT.md  LICENSE    docs            src    tox.ini
CITATION.cff  CONTRIBUTING.md     README.md  pyproject.toml  tests

./docs:
Makefile  conf.py   examples.rst  felupe.rst  howto.rst  make.bat  tutorial.rst
_static   examples  felupe        howto       index.rst  tutorial

./docs/_static:
animation.ogv               fig_titlepage.png  readme.png
benchmark.png               logo.png           readme_animation.mp4
engine-mount_air.vtk        logo.svg           readme_characteristic_curve.svg
engine-mount_animation.mp4  logo_dark.svg      social_preview.svg
engine-mount_metal.vtk      logo_light.svg
engine-mount_rubber.vtk     mesh.vtk

./docs/examples:
_beam.rst           enginemount.rst  numcont.rst          rubberbushing.rst
_platewithhole.rst  images           plasticity.ipynb     rubberspring.rst
beam.ipynb          inflation.ipynb  platewithhole.ipynb  shear.rst

./docs/examples/images:
balloon.png
balloon.svg
beam.png
beam_bodyforce.png
bodyforce-load.png
bodyforce-unload.png
engine-mount_Fx-ux.svg
engine-mount_Fy-uy.svg
engine-mount_deformed.png
engine-mount_mesh.png
fig_bushing-mesh.png
fig_bushing_solid0-stress.png
fig_bushing_solid1-stress.png
fig_bushing_solid2-stress.png
fig_bushing_solids-logstrain.png
fig_bushing_solids-logstrain_clipped.png
getting-started.svg
inflation.png
lab.png
plasticity.png
plasticity.svg
platewithhole.svg
platewithhole_mesh.png
platewithhole_mesh_felupe.png
platewithhole_stress_continuous_alpha.png
platewithhole_stressplot.svg
plot_force-displacement.png
rubber-spring.png
rubber-spring_curve-axial.svg
rubber-spring_curve-lateral.svg
rubber-spring_mesh.png
shear.svg
shear_deformed.png
shear_deformed_old.png
shear_mesh.png
shear_plot.svg

./docs/felupe:
assembly.rst      element.rst  math.rst       quadrature.rst
constitution.rst  field.rst    mechanics.rst  region.rst
dof.rst           images       mesh.rst       tools.rst

./docs/felupe/images:
boundary_axes.png                quad8.png
boundary_center.png              quad9.png
boundary_left.png                quadrature.png
boundary_new_surface.png         quadrature_boundary.png
boundary_surface.png             region-boundary-hexahedron.png
boundary_symx.png                region-boundary-quad.png
container.png                    region-hexahedron.png
dof_partition.png                region-hexahedron27.png
faces_fill_between.png           region-quad.png
hexahedron.png                   region-quad9.png
hexahedron20.png                 region-tetra-mini.png
hexahedron27.png                 region-tetra.png
loadcase_bx.png                  region-triangle-mini.png
loadcase_bx_free.png             region-triangle.png
loadcase_ps.png                  tetra-mini.png
loadcase_shear.png               tetra.png
loadcase_ux.png                  tetra10.png
mesh_container.png               triangle-mini.png
mesh_cube_triangulate_mode0.png  triangle.png
mesh_cube_triangulate_mode3.png  triangle6.png
mesh_expand.png                  umat.png
mesh_fill_between.png            umat_arruda_boyce.png
mesh_merged.png                  umat_composite.png
mesh_midpoints_edges.png         umat_extended_tube.png
mesh_midpoints_faces.png         umat_finite_strain_viscoelastic.png
mesh_midpoints_volumes.png       umat_incompressible.png
mesh_mirror_after.png            umat_linearelastic.png
mesh_mirror_before.png           umat_linearelasticlargestrain.png
mesh_modify_corners_after.png    umat_materialad_neohooke.png
mesh_modify_corners_before.png   umat_mooney_rivlin.png
mesh_revolve.png                 umat_neo_hooke.png
mesh_rotate.png                  umat_neohooke_compressible.png
mesh_runouts.png                 umat_neohooke_nearlyincompressible.png
mesh_runouts_3d.png              umat_ogden.png
mesh_stack.png                   umat_saint_venant_kirchhoff.png
mesh_sweep.png                   umat_third_order_deformation.png
preview_hyperelastic.png         umat_van_der_waals.png
quad.png                         umat_yeoh.png

./docs/howto:
axi.rst        meshgen.rst  solid.rst    umat.rst
composite.rst  mixed.rst    solvers.rst  umat_hyperelasticity.rst
images         rbe2.rst     torsion.rst

./docs/howto/images:
circle.png           fidget_spinner_boundary.png        rectangle-triangle.png
composite.png        fidget_spinner_boundary_faces.png  rectangle_corners.png
cube-tetra-mode.png  fig_torsion-moment.png             runouts.png
cube-tetra.png       fig_torsion.png                    solid-boundary.png
cube.png             fill-between.png                   solid.png
cylinder.png         plate-with-hole.png                threefield_cube.png
fidget_spinner.png   quad.png                           triangle.png

./docs/tutorial:
building_blocks.rst          getting_started.rst  jobs.rst
elementary_deformations.rst  images

./docs/tutorial/images:
deformed_mesh.png                  jobs.png    region.svg  undeformed_mesh.png
fig_hyperelastic-deformations.png  readme.png  umat.png

./src:
felupe  felupe.egg-info

./src/felupe:
__about__.py  assembly      dof      field  mechanics  quadrature  solve
__init__.py   constitution  element  math   mesh       region      tools

./src/felupe/assembly:
__init__.py  _axi.py  _cartesian.py  _integral.py  expression

./src/felupe/assembly/expression:
__init__.py  _bilinear.py   _expression.py  _mixed.py
_basis.py    _decorator.py  _linear.py

./src/felupe/constitution:
__init__.py                    _models_linear_elasticity_large_strain.py
_base.py                       _models_pseudo_elasticity.py
_kinematics.py                 _user_materials.py
_mixed.py                      _user_materials_hyperelastic.py
_models_hyperelasticity.py     _user_materials_models.py
_models_hyperelasticity_ad.py  _view.py
_models_linear_elasticity.py

./src/felupe/dof:
__init__.py  _boundary.py  _loadcase.py  _tools.py

./src/felupe/element:
__init__.py  _hexahedron.py  _line.py  _tetra.py
_base.py     _lagrange.py    _quad.py  _triangle.py

./src/felupe/field:
__init__.py  _base.py       _fields.py   _planestrain.py
_axi.py      _container.py  _indices.py

./src/felupe/math:
__init__.py  _field.py  _math.py  _spatial.py  _tensor.py

./src/felupe/mechanics:
__init__.py  _job.py         _solidbody_gravity.py
_curve.py    _multipoint.py  _solidbody_incompressible.py
_helpers.py  _pointload.py   _solidbody_pressure.py
_item.py     _solidbody.py   _step.py

./src/felupe/mesh:
__init__.py    _discrete_geometry.py  _helpers.py              _read.py
_container.py  _dual.py               _line_rectangle_cube.py  _tools.py
_convert.py    _geometry.py           _mesh.py

./src/felupe/quadrature:
__init__.py  _gausslegendre.py  _scheme.py  _tetra.py  _triangle.py

./src/felupe/region:
__init__.py  _boundary.py  _region.py  _templates.py

./src/felupe/solve:
__init__.py  _solve.py

./src/felupe/tools:
__init__.py  _newton.py  _post.py     _save.py
_misc.py     _plot.py    _project.py  _solve.py

./src/felupe.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./tests:
__init__.py           test_element.py    test_planestrain.py
mesh.bdf              test_field.py      test_plot.py
mesh_no-cells.bdf     test_form.py       test_quadrature.py
test_basis.py         test_job.py        test_readme.py
test_bilinearform.py  test_math.py       test_region.py
test_composite.py     test_mechanics.py  test_solve.py
test_constitution.py  test_mesh.py       test_tools.py
test_dof.py           test_mpc.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/adtzlr__felupe__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/pycontribs__pyrax__0.0 && find . -type f
./setup.cfg
./HACKING.rst
./docs/images.md
./docs/cloud_monitoring.md
./docs/cloud_networks.md
./docs/dox.cfg
./docs/cloud_databases.md
./docs/context_objects.md
./docs/cloud_servers.md
./docs/getting_started.md
./docs/installing_pyrax.md
./docs/cloud_dns.md
./docs/cloud_blockstorage.md
./docs/queues.md
./docs/cloud_loadbalancers.md
./docs/cloud_files.md
./docs/autoscaling.md
./MANIFEST.in
./tox.ini
./setup.py
./RELEASENOTES.md
./.github/workflows/pypi_upload.yml
./.github/workflows/main.yml
./.git/ORIG_HEAD
./.git/logs/refs/heads/master
./.git/logs/HEAD
./.git/description
./.git/refs/heads/master
./.git/index
./.git/objects/pack/pack-2392442f25a3bf0c38d503c931bee7236313feac.idx
./.git/objects/pack/pack-2392442f25a3bf0c38d503c931bee7236313feac.pack
./.git/packed-refs
./.git/info/exclude
./.git/config
./.git/hooks/fsmonitor-watchman.sample
./.git/hooks/pre-receive.sample
./.git/hooks/prepare-commit-msg.sample
./.git/hooks/push-to-checkout.sample
./.git/hooks/post-update.sample
./.git/hooks/applypatch-msg.sample
./.git/hooks/pre-push.sample
./.git/hooks/pre-commit.sample
./.git/hooks/commit-msg.sample
./.git/hooks/pre-merge-commit.sample
./.git/hooks/update.sample
./.git/hooks/pre-applypatch.sample
./.git/hooks/pre-rebase.sample
./.git/HEAD
./.gitignore
./README.rst
./Makefile
./pyrax.egg-info/SOURCES.txt
./pyrax.egg-info/requires.txt
./pyrax.egg-info/dependency_links.txt
./pyrax.egg-info/top_level.txt
./pyrax.egg-info/PKG-INFO
./TODO
./.coveragerc
./pyrax/client.py
./pyrax/clouddatabases.py
./pyrax/exceptions.py
./pyrax/manager.py
./pyrax/cloudnetworks.py
./pyrax/identity/rax_identity.py
./pyrax/identity/__init__.py
./pyrax/identity/keystone_identity.py
./pyrax/cloudblockstorage.py
./pyrax/__init__.py
./pyrax/cloudcdn.py
./pyrax/image.py
./pyrax/http.py
./pyrax/version.py
./pyrax/service_catalog.py
./pyrax/resource.py
./pyrax/clouddns.py
./pyrax/cloudloadbalancers.py
./pyrax/queueing.py
./pyrax/autoscale.py
./pyrax/object_storage.py
./pyrax/utils.py
./pyrax/cloudmonitoring.py
./pyrax/fakes.py
./pyrax/base_identity.py
./pyrax.spec.in
./LICENSE
./tests/__init__.py
./tests/unit/test_autoscale.py
./tests/unit/test_client.py
./tests/unit/test_exceptions.py
./tests/unit/test_http.py
./tests/unit/__init__.py
./tests/unit/test_service_catalog.py
./tests/unit/test_queues.py
./tests/unit/test_cloud_monitoring.py
./tests/unit/test_cloud_loadbalancers.py
./tests/unit/test_module.py
./tests/unit/test_identity.py
./tests/unit/test_cloud_dns.py
./tests/unit/test_object_storage.py
./tests/unit/test_manager.py
./tests/unit/test_cloud_blockstorage.py
./tests/unit/test_cloud_cdn.py
./tests/unit/test_image.py
./tests/unit/test_cloud_networks.py
./tests/unit/test_cloud_databases.py
./tests/unit/test_utils.py
./tests/unit/test_resource.py
./tests/unit/base_test.py
./tests/integrated/smoketest.py
./tests/integrated/__init__.py
./tests/integrated/test_module.py
./CONTRIBUTING.rst
./samples/cloudfiles/create_container.py
./samples/cloudfiles/upload_folder.py
./samples/cloudfiles/container_cdn.py
./samples/cloudfiles/upload_file.py
./samples/cloudfiles/temporary_url.py
./samples/cloudfiles/container_metadata.py
./samples/cloudfiles/object_metadata.py
./samples/cloudfiles/delete_objects.py
./samples/cloudfiles/store_object.py
./samples/cloudfiles/get_objects.py
./samples/cloudfiles/fetch_objects.py
./samples/cloudfiles/store_with_etag.py
./samples/auth_direct.py
./samples/cloud_dns/list_subdomains.py
./samples/cloud_dns/list_records.py
./samples/cloud_dns/delete_domain.py
./samples/cloud_dns/list_domains.py
./samples/cloud_dns/delete_all_subdomains.py
./samples/cloud_dns/add_ptr_records.py
./samples/cloud_dns/create_subdomain.py
./samples/cloud_dns/iterate_domains.py
./samples/cloud_dns/update_ptr_record.py
./samples/cloud_dns/create_domain.py
./samples/cloud_dns/add_records.py
./samples/cloud_dns/delete_all_ptr_records.py
./samples/cloud_dns/delete_all_records.py
./samples/cloud_dns/list_ptr_records.py
./samples/cloud_dns/update_domain.py
./samples/cloudservers/reboot.py
./samples/cloudservers/list_images.py
./samples/cloudservers/delete_image.py
./samples/cloudservers/create_image.py
./samples/cloudservers/list_flavors.py
./samples/cloudservers/create_server.py
./samples/cloudservers/delete_server.py
./samples/cloudservers/create_with_meta_and_files.py
./samples/auth_creds_file.py
./samples/cloud_blockstorage/create_snapshot.py
./samples/cloud_blockstorage/create_volume.py
./samples/cloud_blockstorage/delete_volume.py
./samples/cloud_blockstorage/attach_detach_volume.py
./samples/autoscale/delete_scaling_group.py
./samples/autoscale/delete_policy.py
./samples/autoscale/add_webhook.py
./samples/autoscale/add_policy.py
./samples/autoscale/create_scaling_group.py
./samples/autoscale/delete_webhook.py
./samples/cloud_databases/create_instance.py
./samples/cloud_databases/add_user.py
./samples/cloud_databases/list_flavors.py
./samples/cloud_databases/delete_instance.py
./samples/cloud_databases/add_database.py
./samples/cloud_loadbalancers/create_vip.py
./samples/cloud_loadbalancers/add_remove_node.py
./samples/cloud_loadbalancers/get_lb_attributes.py
./samples/cloud_loadbalancers/create_lb.py
./samples/cloud_loadbalancers/list_protocols.py
./samples/cloud_loadbalancers/metadata.py
./samples/cloud_loadbalancers/node_condition.py
./samples/cloud_loadbalancers/list_algorithms.py
./samples/cloud_loadbalancers/session_persistence.py
./samples/cloud_loadbalancers/create_node.py
./samples/cloud_loadbalancers/get_usage.py
./samples/cloud_loadbalancers/ssl_termination.py
./samples/cloud_loadbalancers/content_caching.py
./samples/cloud_monitoring/create_alarm.py
./samples/cloud_monitoring/create_check.py
./samples/cloud_monitoring/create_notification.py
./samples/cloud_monitoring/create_entity.py
./samples/cloud_monitoring/util.py
./samples/cloud_networks/create_bastion.py
./samples/cloud_networks/create_network.py
./samples/cloud_networks/delete_network.py
./samples/queueing/list_queues.py
./samples/queueing/claim_messages.py
./samples/queueing/list_messages.py
./samples/queueing/create_queue.py
./samples/queueing/delete_message.py
./samples/queueing/delete_queue.py
./samples/queueing/list_claims.py
./samples/queueing/delete_messages.py
./samples/queueing/post_message.py
./samples/images/list_images.py
./samples/images/import_task.py
./samples/images/accept_images.py
./samples/images/delete_image_member.py
./samples/images/list_image_members.py
./samples/images/add_image_member.py
./samples/images/list_images_filtered.py
./samples/images/list_tasks.py
./samples/images/export_task.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/pycontribs__pyrax__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/PyFilesystem__pyfilesystem2__0.0 && find . -type f -name "*.py"
./tests/test_path.py
./tests/test_new_name.py
./tests/test_errors.py
./tests/test_appfs.py
./tests/test_permissions.py
./tests/test_wildcard.py
./tests/test_fscompat.py
./tests/test_archives.py
./tests/test_url_tools.py
./tests/test_opener.py
./tests/__init__.py
./tests/test_ftpfs.py
./tests/test_info.py
./tests/test_tarfs.py
./tests/test_mode.py
./tests/test_tempfs.py
./tests/test_copy.py
./tests/test_osfs.py
./tests/test_enums.py
./tests/test_subfs.py
./tests/test_mountfs.py
./tests/test_multifs.py
./tests/test_bulk.py
./tests/test_filesize.py
./tests/test_encoding.py
./tests/test_move.py
./tests/test_base.py
./tests/test_wrapfs.py
./tests/test_imports.py
./tests/test_tree.py
./tests/test_time.py
./tests/test_tools.py
./tests/test_error_tools.py
./tests/conftest.py
./tests/test_mirror.py
./tests/test_zipfs.py
./tests/test_iotools.py
./tests/test_walk.py
./tests/test_lrucache.py
./tests/test_wrap.py
./tests/test_glob.py
./tests/test_ftp_parse.py
./tests/test_memoryfs.py
./examples/find_dups.py
./examples/upload.py
./examples/rm_pyc.py
./examples/count_py.py
./fs/wildcard.py
./fs/subfs.py
./fs/_fscompat.py
./fs/_ftp_parse.py
./fs/glob.py
./fs/_bulk.py
./fs/permissions.py
./fs/opener/parse.py
./fs/opener/appfs.py
./fs/opener/osfs.py
./fs/opener/__init__.py
./fs/opener/memoryfs.py
./fs/opener/registry.py
./fs/opener/ftpfs.py
./fs/opener/tarfs.py
./fs/opener/tempfs.py
./fs/opener/zipfs.py
./fs/opener/errors.py
./fs/opener/base.py
./fs/constants.py
./fs/appfs.py
./fs/multifs.py
./fs/osfs.py
./fs/filesize.py
./fs/__init__.py
./fs/_repr.py
./fs/move.py
./fs/iotools.py
./fs/enums.py
./fs/compress.py
./fs/memoryfs.py
./fs/mirror.py
./fs/wrap.py
./fs/lrucache.py
./fs/ftpfs.py
./fs/tarfs.py
./fs/copy.py
./fs/info.py
./fs/wrapfs.py
./fs/tempfs.py
./fs/tools.py
./fs/_url_tools.py
./fs/test.py
./fs/time.py
./fs/zipfs.py
./fs/path.py
./fs/walk.py
./fs/mountfs.py
./fs/_typing.py
./fs/tree.py
./fs/errors.py
./fs/_version.py
./fs/error_tools.py
./fs/mode.py
./fs/base.py
./docs/source/conf.py
./setup.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/PyFilesystem__pyfilesystem2__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -l /workspace/NREL__PVDegradationTools__0.0
total 60
-rw-rw-r-- 1 root root 1669 Feb  4 16:02 LICENSE.md
-rw-rw-r-- 1 root root   52 Feb  4 16:02 MANIFEST.in
-rw-rw-r-- 1 root root 4488 Feb  4 16:02 README.md
drwxr-xr-x 2 root root 4096 Feb  4 16:02 TEMP
-rw-rw-r-- 1 root root 1633 Feb  4 16:02 cla-1.0.md
drwxr-xr-x 2 root root 4096 Feb  4 16:02 contributors
drwxr-xr-x 3 root root 4096 Feb  4 16:02 docs
drwxr-xr-x 3 root root 4096 Feb  4 16:02 pvdeg
drwxrwxr-x 2 root root 4096 Feb  4 16:08 pvdeg.egg-info
-rw-rw-r-- 1 root root 2249 Feb  4 16:02 pyproject.toml
drwxr-xr-x 2 root root 4096 Feb  4 16:02 scripts
-rw-rw-r-- 1 root root 2903 Feb  4 16:02 sign-cla.md
drwxr-xr-x 3 root root 4096 Feb  4 16:02 tests
drwxr-xr-x 4 root root 4096 Feb  4 16:02 tutorials_and_tools[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/NREL__PVDegradationTools__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/mie-lab__trackintel__0.0 && ls -R
.:
AUTHORS.md       ROADMAP.md  environment.yml   tests
CONTRIBUTING.md  appveyor    examples          trackintel
LICENSE          apt.txt     requirements.txt  trackintel.egg-info
Pipfile          ci          setup.py
README.md        docs        sql

./appveyor:
run_with_env.cmd

./ci:
envs

./ci/envs:
37-latest-conda-forge.yaml  39-latest-conda-forge.yaml
38-latest-conda-forge.yaml  setup_postgres.sh

./docs:
_static  assets  conf.py  environment.yml  index.rst  modules  tutorial.rst

./docs/_static:
example_locations.png            trackintel_logo.png
example_modal_split_geolife.png  trackintel_logo_squash.png
example_positionfixes.png        tripalgorithm.png
example_staypoints.png           tripalgorithm.svg
example_triplegs.png

./docs/assets:
hierarchy.png           trackintel_logo.svg    visualisation_editable.pptx
locations_with_pfs.png  tripalgorithm.graphml

./docs/modules:
analysis.rst  io.rst     preprocessing.rst
geogr.rst     model.rst  visualization.rst

./examples:
README.md    import_export_postgis.py    setup_example_database.py
cache        log                         trackintel_basic_tutorial.ipynb
config.json  out
data         preprocess_trajectories.py

./examples/cache:
e897ab7e9047ab46dd3814fcc9a755fb2ed6e7ad.json

./examples/data:
geolife_trajectory.csv  gpsies_trajectory.csv  pfs_tutorial.geojson
google_trajectory.csv   pfs.csv                posmo_trajectory.csv

./examples/log:

./examples/out:

./sql:
create_tables_pg.sql

./tests:
__init__.py  data      geogr  model          test_core.py
analysis     examples  io     preprocessing  visualization

./tests/analysis:
__init__.py  test_label.py  test_modal_split.py  test_tracking_quality.py

./tests/data:
area                           staypoints.csv
geolife                        staypoints.geojson
geolife_long                   staypoints_mod_columns.csv
geolife_modes                  triplegs.csv
locations.csv                  triplegs.geojson
locations.geojson              triplegs_mod_columns.csv
locations_mod_columns.csv      triplegs_transport_mode_identification.csv
positionfixes.csv              triplegs_with_too_many_points_test.csv
positionfixes.geojson          trips
positionfixes_mod_columns.csv  trips.csv
sim1.csv                       trips_mod_columns.csv
sim2.csv

./tests/data/area:
tsinghua.geojson

./tests/data/geolife:
000  geolife_staypoints.csv  geolife_staypoints_short.csv  geolife_triplegs.csv

./tests/data/geolife/000:
Trajectory

./tests/data/geolife/000/Trajectory:
20081024020959.plt

./tests/data/geolife_long:
000  001  stps_tpls.csv  trips.csv

./tests/data/geolife_long/000:
Trajectory

./tests/data/geolife_long/000/Trajectory:
20081023025304.plt  20081024020959.plt

./tests/data/geolife_long/001:
Trajectory

./tests/data/geolife_long/001/Trajectory:
20081023055305.plt  20081023234104.plt

./tests/data/geolife_modes:
010  020  178

./tests/data/geolife_modes/010:
Trajectory  labels.txt

./tests/data/geolife_modes/010/Trajectory:
20080330004134.plt  20080330160039.plt  20080331160008.plt  20080402060926.plt

./tests/data/geolife_modes/020:
Trajectory  labels.txt

./tests/data/geolife_modes/020/Trajectory:
20111130020900.plt  20111130151807.plt  20111130152335.plt  20111201123535.plt

./tests/data/geolife_modes/178:
Trajectory

./tests/data/geolife_modes/178/Trajectory:
20100312172608.plt

./tests/data/trips:
staypoints_gaps.csv  triplegs_gaps.csv  trips_gaps.csv
stps_tpls_gaps.csv   trips.csv

./tests/examples:
__init__.py  test_examples.py  test_tutorial.py

./tests/geogr:
__init__.py  test_distances.py  test_point_distances.py

./tests/io:
__init__.py             test_file.py            test_postgis_gpd.py
test_dataset_reader.py  test_from_geopandas.py

./tests/model:
__init__.py        test_positionfixes.py  test_triplegs.py  test_users.py
test_locations.py  test_staypoints.py     test_trips.py

./tests/preprocessing:
__init__.py     test_positionfixes.py  test_triplegs.py
test_filter.py  test_staypoints.py     test_util.py

./tests/visualization:
__init__.py        test_modal_split.py    test_staypoints.py  test_util.py
test_locations.py  test_positionfixes.py  test_triplegs.py

./trackintel:
__init__.py     analysis  geogr  model          visualization
__version__.py  core.py   io     preprocessing

./trackintel/analysis:
__init__.py  label.py  modal_split.py  tracking_quality.py

./trackintel/geogr:
__init__.py  distances.py  point_distances.py

./trackintel/io:
__init__.py  dataset_reader.py  file.py  from_geopandas.py  postgis.py

./trackintel/model:
__init__.py   positionfixes.py  tours.py     trips.py
locations.py  staypoints.py     triplegs.py  users.py

./trackintel/preprocessing:
__init__.py  filter.py  positionfixes.py  staypoints.py  triplegs.py  util.py

./trackintel/visualization:
__init__.py   modal_split.py  positionfixes.py  triplegs.py
locations.py  osm.py          staypoints.py     util.py

./trackintel.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/mie-lab__trackintel__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/sdv-dev__RDT__0.0 && ls -R
.:
AUTHORS.rst       HISTORY.md  MANIFEST.in  RELEASE.md  rdt.egg-info  tasks.py
CONTRIBUTING.rst  INSTALL.md  Makefile     conda       setup.cfg     tests
DEVELOPMENT.rst   LICENSE     README.md    rdt         setup.py      tox.ini

./conda:
README.md  meta.yaml

./rdt:
__init__.py  errors.py  hyper_transformer.py  performance  transformers

./rdt/performance:
__init__.py  datasets  performance.py  profiling.py

./rdt/performance/datasets:
__init__.py  boolean.py      datetime.py   pii.py   utils.py
base.py      categorical.py  numerical.py  text.py

./rdt/transformers:
__init__.py  base.py     categorical.py  null.py       pii      utils.py
addons       boolean.py  datetime.py     numerical.py  text.py

./rdt/transformers/addons:
README.md  addons_setup.py  identity

./rdt/transformers/addons/identity:
__init__.py  config.json  identity.py

./rdt/transformers/pii:
__init__.py  anonymizer.py  utils.py

./rdt.egg-info:
PKG-INFO     dependency_links.txt  requires.txt
SOURCES.txt  not-zip-safe          top_level.txt

./tests:
__init__.py    contributing.py  integration  quality
code_style.py  datasets         performance  unit

./tests/datasets:
tests

./tests/datasets/tests:
test_boolean.py      test_datetime.py   test_utils.py
test_categorical.py  test_numerical.py

./tests/integration:
__init__.py  test_hyper_transformer.py  test_transformers.py  transformers

./tests/integration/transformers:
__init__.py  test_base.py     test_categorical.py  test_numerical.py
pii          test_boolean.py  test_datetime.py     test_text.py

./tests/integration/transformers/pii:
__init__.py  test_anonymizer.py

./tests/performance:
README.md  __init__.py  test_performance.py  tests

./tests/performance/tests:
__init__.py  test_profiling.py

./tests/quality:
__init__.py  dataset_info.csv  test_quality.py  utils.py

./tests/unit:
__init__.py  test___init__.py  test_hyper_transformer.py  transformers

./tests/unit/transformers:
__init__.py  test___init__.py  test_categorical.py  test_numerical.py
addons       test_base.py      test_datetime.py     test_text.py
pii          test_boolean.py   test_null.py         test_utils.py

./tests/unit/transformers/addons:
__init__.py  identity

./tests/unit/transformers/addons/identity:
__init__.py  test_identity.py

./tests/unit/transformers/pii:
__init__.py  test_anonymizer.py  test_utils.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/sdv-dev__RDT__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/RPing__influx-prompt__0.0 && ls -R
.:
LICENSE      Pipfile.lock   influx_prompt.egg-info  screenshot.gif  tests
MANIFEST.in  README.md      pytest.ini              setup.cfg       tox.ini
Pipfile      influx_prompt  requirements.txt        setup.py

./influx_prompt:
__init__.py  completer.py   extra_command.py  main.py
compat.py    completion.py  influx_client.py  tabular.py

./influx_prompt.egg-info:
PKG-INFO     dependency_links.txt  not-zip-safe  top_level.txt
SOURCES.txt  entry_points.txt      requires.txt

./tests:
__init__.py  test_client.py     test_extra_command.py  utils.py
conftest.py  test_completer.py  test_tabular.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/RPing__influx-prompt__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/jina-ai__jina-hubble-sdk__0.0 && ls -R
.:
LICENSE      Makefile   hubble          requirements-dev.txt  setup.cfg  tests
MANIFEST.in  README.md  pyproject.toml  requirements.txt      setup.py

./hubble:
__init__.py  api.py  dockerauth.py  executor  resources
__main__.py  client  excepts.py     parsers   utils

./hubble/client:
__init__.py  base.py  client.py  endpoints.py  session.py

./hubble/executor:
__init__.py  helper.py  hubio.py  requirements.py
__main__.py  hubapi.py  parsers

./hubble/executor/parsers:
__init__.py  base.py  list.py  new.py  pull.py  push.py  status.py

./hubble/parsers:
__init__.py  base.py  helper.py  token.py

./hubble/resources:
Python.gitignore  ci-vendors.json  executor-template

./hubble/resources/executor-template:
Dockerfile  config.yml   jax.Dockerfile    tf.Dockerfile
README.md   executor.py  requirements.txt  torch.Dockerfile

./hubble/utils:
__init__.py  api_utils.py  auth.py  config.py  notebook.py  pbar.py

./tests:
__init__.py  conftest.py  integration  resources  unit

./tests/integration:
__init__.py  test_client.py

./tests/resources:
model

./tests/unit:
__init__.py  client  executor  test_parser.py  utils

./tests/unit/client:
__init__.py  test_client.py  test_session.py

./tests/unit/executor:
Dockerfile        dummy_executor         dummy_executor.zip   test_helper.py
__init__.py       dummy_executor.tar     dummy_executor_fail  test_hubapi.py
docker_pull.logs  dummy_executor.tar.gz  parser               test_hubio.py

./tests/unit/executor/dummy_executor:
__init__.py  config.yml  dep.py  exec.py  requirements.txt

./tests/unit/executor/dummy_executor_fail:
__init__.py  dep.py  exec.py  requirements.txt

./tests/unit/executor/parser:
__init__.py  test_new.py  test_pushpull.py

./tests/unit/utils:
__init__.py  config.json  test_api_utils.py  test_auth.py  test_config.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/jina-ai__jina-hubble-sdk__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -la /workspace/holoviz__datashader__0.0
total 156
drwxr-xr-x 10 root root  4096 Feb  5 17:08 .
drwxrwxr-x  3 root root  4096 Feb  5 16:32 ..
-rw-rw-r--  1 root root    53 Feb  5 17:08 .coveragerc
drwxr-xr-x  5 root root  4096 Feb  5 17:11 .git
-rw-rw-r--  1 root root    47 Feb  5 17:08 .gitattributes
drwxr-xr-x  3 root root  4096 Feb  5 17:08 .github
-rw-rw-r--  1 root root  1177 Feb  5 17:08 .gitignore
-rw-rw-r--  1 root root 55164 Feb  5 17:08 CHANGELOG.rst
-rw-rw-r--  1 root root   312 Feb  5 17:08 CODE_OF_CONDUCT.md
-rw-rw-r--  1 root root  1502 Feb  5 17:08 LICENSE.txt
-rw-rw-r--  1 root root   214 Feb  5 17:08 MANIFEST.in
-rw-rw-r--  1 root root  5702 Feb  5 17:08 README.md
-rw-rw-r--  1 root root  2482 Feb  5 17:08 ROADMAP.md
drwxr-xr-x  3 root root  4096 Feb  5 17:08 benchmarks
-rw-rw-r--  1 root root   145 Feb  5 17:08 codecov.yml
drwxrwxr-x  2 root root  4096 Feb  5 17:08 conda.recipe
drwxr-xr-x  6 root root  4096 Feb  5 17:11 datashader
drwxrwxr-x  2 root root  4096 Feb  5 17:11 datashader.egg-info
drwxr-xr-x  7 root root  4096 Feb  5 17:08 doc
-rw-rw-r--  1 root root   496 Feb  5 17:08 dodo.py
drwxr-xr-x  6 root root  4096 Feb  5 17:08 examples
-rw-rw-r--  1 root root   112 Feb  5 17:08 pyproject.toml
-rw-rw-r--  1 root root   119 Feb  5 17:08 setup.cfg
-rw-rw-r--  1 root root  3435 Feb  5 17:08 setup.py
-rw-rw-r--  1 root root  2910 Feb  5 17:08 tox.ini[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/holoviz__datashader__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -R /workspace/WISDEM__ORBIT__0.0
/workspace/WISDEM__ORBIT__0.0:
LICENSE      __pycache__  misc                 setup.cfg  versioneer.py
MANIFEST.in  docs         orbit_nrel.egg-info  setup.py
ORBIT        examples     pyproject.toml       templates
README.rst   library      readthedocs.yaml     tests

/workspace/WISDEM__ORBIT__0.0/ORBIT:
__init__.py  api        core        parametric.py  supply_chain.py
_version.py  config.py  manager.py  phases

/workspace/WISDEM__ORBIT__0.0/ORBIT/api:
__init__.py  wisdem.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/core:
__init__.py    defaults        library.py  supply_chain.py
cargo.py       environment.py  logic       vessel.py
components.py  exceptions.py   port.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/core/defaults:
__init__.py  common_costs.yaml  process_times.yaml

/workspace/WISDEM__ORBIT__0.0/ORBIT/core/logic:
__init__.py  vessel_logic.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases:
__init__.py  base.py  design  install

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/design:
__init__.py             export_system_design.py   scour_protection_design.py
_cables.py              monopile_design.py        semi_submersible_design.py
array_system_design.py  mooring_system_design.py  spar_design.py
design_phase.py         oss_design.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install:
__init__.py       jacket_install    oss_install               turbine_install
cable_install     monopile_install  quayside_assembly_tow
install_phase.py  mooring_install   scour_protection_install

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/cable_install:
__init__.py  array.py  common.py  export.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/jacket_install:
__init__.py  common.py  standard.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/monopile_install:
__init__.py  common.py  standard.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/mooring_install:
__init__.py  mooring.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/oss_install:
__init__.py  common.py  floating.py  standard.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/quayside_assembly_tow:
__init__.py  common.py  gravity_base.py  moored.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/scour_protection_install:
__init__.py  standard.py

/workspace/WISDEM__ORBIT__0.0/ORBIT/phases/install/turbine_install:
__init__.py  common.py  standard.py

/workspace/WISDEM__ORBIT__0.0/__pycache__:
versioneer.cpython-39.pyc

/workspace/WISDEM__ORBIT__0.0/docs:
Makefile  _templates  conf.py  contents.rst  index.rst  make.bat  source

/workspace/WISDEM__ORBIT__0.0/docs/_templates:
class.rst  class_without_init.rst  numpy_docstring.rst

/workspace/WISDEM__ORBIT__0.0/docs/source:
_static                    api_ProjectManager.rst  images        team.rst
api.rst                    changelog.rst           intro         tutorial
api_DesignPhase.rst        doc_DesignPhase.rst     methods.rst
api_InstallPhase.rst       doc_InstallPhase.rst    phases
api_ParametricManager.rst  examples.rst            publications

/workspace/WISDEM__ORBIT__0.0/docs/source/_static:
css

/workspace/WISDEM__ORBIT__0.0/docs/source/_static/css:
style.css

/workspace/WISDEM__ORBIT__0.0/docs/source/images:
examples  process_diagrams

/workspace/WISDEM__ORBIT__0.0/docs/source/images/examples:
full_grid_example.png  partial_grid_example.png
full_ring_example.png  partial_ring_example.png

/workspace/WISDEM__ORBIT__0.0/docs/source/images/process_diagrams:
ArrayCableInstall.png          Permitting_and_Assessment.png
ArraySystemDesign.png          PortLogistics.png
ExportCableInstall.png         TopLevel.png
ExportSystemDesign.png         monopile_install.png
MonopileDesign.png             monopile_single_wtiv.png
OffshoreBOS.png                monopile_wtiv_with_feeders.png
OffshoreSubstation.png         turbine_install.png
OffshoreSubstationInstall.png  turbine_single_wtiv.png
OnshoreSubstation.png          turbine_wtiv_with_feeders.png

/workspace/WISDEM__ORBIT__0.0/docs/source/intro:
bos.rst  index.rst  overview.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases:
design  install

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/design:
api_ArraySystemDesign.rst         doc_ArraySystemDesign.rst
api_CableHelpers.rst              doc_CableHelpers.rst
api_ExportSystemDesign.rst        doc_ExportSystemDesign.rst
api_MonopileDesign.rst            doc_MonopileDesign.rst
api_MooringSystemDesign.rst       doc_MooringSystemDesign.rst
api_OffshoreSubstationDesign.rst  doc_OffshoreSubstationDesign.rst
api_ScourProtectionDesign.rst     doc_ScourProtectionDesign.rst
api_SemiSubmersibleDesign.rst     doc_SemiSubmersibleDesign.rst
api_SparDesign.rst                doc_SparDesign.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install:
array  export  jacket  monopile  mooring  oss  quayside_towout  scour  turbine

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/array:
api_ArrayCableInstall.rst  doc_ArrayCableInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/export:
api_ExportCableInstall.rst  doc_ExportCableInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/jacket:
api_JacketInstall.rst  doc_JacketInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/monopile:
api_MonopileInstallation.rst  doc_MonopileInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/mooring:
api_MooringSystemInstallation.rst  doc_MooringSystemInstallation.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/oss:
api_OffshoreSubstationInstall.rst  doc_OffshoreSubstationInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/quayside_towout:
api_GravityBasedInstallation.rst  doc_GravityBasedInstallation.rst
api_MooredSubInstallation.rst     doc_MooredSubInstallation.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/scour:
api_ScourProtectionInstall.rst  doc_ScourProtectionInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/phases/install/turbine:
api_TurbineInstallation.rst  doc_TurbineInstall.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/publications:
index.rst

/workspace/WISDEM__ORBIT__0.0/docs/source/tutorial:
available_outputs.rst  index.rst               phase_specific.rst
define_vessels.rst     load_config.rst         project_manager.rst
design_phases.rst      parametric_manager.rst  start_dates.rst

/workspace/WISDEM__ORBIT__0.0/examples:
'1. Introduction.ipynb'
'2. Installation Modules.ipynb'
'3. ProjectManager Introduction.ipynb'
'4. Example Fixed Project.ipynb'
'5. Example Floating Project.ipynb'
'Example - Cable Install Configurations.ipynb'
'Example - Cash Flow.ipynb'
'Example - Custom Array Layout.ipynb'
'Example - Dependent Phases.ipynb'
'Example - Modifying Library Assets.ipynb'
'Example - Parametric Manager.ipynb'
 configs
 data
 supply_chain_dev.ipynb

/workspace/WISDEM__ORBIT__0.0/examples/configs:
example_fixed_project.yaml  example_floating_project.yaml

/workspace/WISDEM__ORBIT__0.0/examples/data:
example_weather.csv

/workspace/WISDEM__ORBIT__0.0/library:
__init__.py  cables  defaults  ports  project  turbines  vessels

/workspace/WISDEM__ORBIT__0.0/library/cables:
XLPE_1000m_220kV.yaml  XLPE_630mm_33kV.yaml  dudgeon_array_no_data.csv
XLPE_185mm_66kV.yaml   XLPE_630mm_66kV.yaml  dudgeon_custom.csv
XLPE_400mm_33kV.yaml   __init__.py           dudgeon_custom_to_update.csv
XLPE_500mm_132kV.yaml  dudgeon_array.csv     dudgeon_distance_based.csv

/workspace/WISDEM__ORBIT__0.0/library/defaults:
__init__.py

/workspace/WISDEM__ORBIT__0.0/library/ports:
__init__.py  example_port.yaml

/workspace/WISDEM__ORBIT__0.0/library/project:
__init__.py  config

/workspace/WISDEM__ORBIT__0.0/library/project/config:
__init__.py
example_array_cable_install.yaml
example_custom_array_custom.yaml
example_custom_array_exclusions.yaml
example_custom_array_no_data.yaml
example_custom_array_project_manager.yaml
example_custom_array_simple.yaml
example_custom_array_simple_distance_based.yaml

/workspace/WISDEM__ORBIT__0.0/library/turbines:
12MW_generic.yaml  15MW_generic.yaml  SWT_6MW_154m_110m.yaml  __init__.py

/workspace/WISDEM__ORBIT__0.0/library/vessels:
__init__.py                           example_support_vessel.yaml
example_cable_lay_vessel.yaml         example_towing_vessel.yaml
example_feeder.yaml                   example_wtiv.yaml
example_heavy_feeder.yaml             floating_barge.yaml
example_heavy_lift_vessel.yaml        floating_heavy_lift_vessel.yaml
example_scour_protection_vessel.yaml  future_feeder.yaml

/workspace/WISDEM__ORBIT__0.0/misc:
supply_chain.ipynb  supply_chain_plots.py  supply_chain_project.yaml

/workspace/WISDEM__ORBIT__0.0/orbit_nrel.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

/workspace/WISDEM__ORBIT__0.0/templates:
design_module.py

/workspace/WISDEM__ORBIT__0.0/tests:
__init__.py  data                                       test_parametric.py
api          phases                                     test_project_manager.py
conftest.py  test_config_management.py
core         test_design_install_phase_interactions.py

/workspace/WISDEM__ORBIT__0.0/tests/api:
test_wisdem_api.py

/workspace/WISDEM__ORBIT__0.0/tests/core:
test_components.py   test_library.py  test_vessel.py
test_environment.py  test_port.py

/workspace/WISDEM__ORBIT__0.0/tests/data:
__init__.py  library  test_weather.csv

/workspace/WISDEM__ORBIT__0.0/tests/data/library:
cables  project  turbines  vessels

/workspace/WISDEM__ORBIT__0.0/tests/data/library/cables:
XLPE_300mm_33kV.yaml  duplicate_coordinates.csv  missing_columns.csv
XLPE_400mm_33kV.yaml  incomplete_optional.csv    passes.csv
XLPE_630mm_33kV.yaml  incomplete_required.csv    test_custom.csv

/workspace/WISDEM__ORBIT__0.0/tests/data/library/project:
config

/workspace/WISDEM__ORBIT__0.0/tests/data/library/project/config:
array_cable_install.yaml              moored_install_no_supply.yaml
array_design_full_ring.yaml           mooring_system_install.yaml
complete_floating_project.yaml        multi_wtiv_mono_install.yaml
complete_project.yaml                 oss_install.yaml
export_cable_install.yaml             oss_multi_feeder_substation_install.yaml
export_design.yaml                    project_manager.yaml
feeder_jacket_install.yaml            scour_protection_install.yaml
floating_oss_install.yaml             single_wtiv_jacket_install.yaml
floating_turbine_install_feeder.yaml  single_wtiv_mono_install.yaml
gbf_install.yaml                      turbine_install_feeder.yaml
library.yaml                          turbine_install_long_mobilize.yaml
moored_install.yaml                   turbine_install_wtiv.yaml

/workspace/WISDEM__ORBIT__0.0/tests/data/library/turbines:
12MW_generic.yaml

/workspace/WISDEM__ORBIT__0.0/tests/data/library/vessels:
test_cable_lay_vessel.yaml            test_scour_protection_vessel.yaml
test_feeder.yaml                      test_support_vessel.yaml
test_floating_barge.yaml              test_towing_vessel.yaml
test_floating_heavy_lift_vessel.yaml  test_wtiv.yaml
test_heavy_lift_vessel.yaml           test_wtiv_mobilize.yaml
test_phase_specific_wtiv.yaml

/workspace/WISDEM__ORBIT__0.0/tests/phases:
__init__.py  design  install  test_base.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/design:
test_array_system_design.py    test_oss_design.py
test_cable.py                  test_scour_protection_design.py
test_export_system_design.py   test_semisubmersible_design.py
test_monopile_design.py        test_spar_design.py
test_mooring_system_design.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install:
cable_install     mooring_install        scour_protection_install
jacket_install    oss_install            test_install_phase.py
monopile_install  quayside_assembly_tow  turbine_install

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/cable_install:
test_array_install.py  test_cable_tasks.py  test_export_install.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/jacket_install:
test_jacket_install.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/monopile_install:
test_monopile_install.py  test_monopile_tasks.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/mooring_install:
test_mooring_install.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/oss_install:
test_oss_install.py  test_oss_tasks.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/quayside_assembly_tow:
test_common.py  test_gravity_based.py  test_moored.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/scour_protection_install:
test_scour_protection.py

/workspace/WISDEM__ORBIT__0.0/tests/phases/install/turbine_install:
test_turbine_install.py  test_turbine_tasks.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/WISDEM__ORBIT__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/sdv-dev__RDT__0.0 && find . -type f -name "*.py"
./setup.py
./.eggs/pytest_runner-6.0.1-py3.9.egg/ptr/__init__.py
./tasks.py
./rdt/transformers/datetime.py
./rdt/transformers/numerical.py
./rdt/transformers/null.py
./rdt/transformers/__init__.py
./rdt/transformers/text.py
./rdt/transformers/addons/identity/__init__.py
./rdt/transformers/addons/identity/identity.py
./rdt/transformers/addons/addons_setup.py
./rdt/transformers/pii/__init__.py
./rdt/transformers/pii/utils.py
./rdt/transformers/pii/anonymizer.py
./rdt/transformers/base.py
./rdt/transformers/categorical.py
./rdt/transformers/boolean.py
./rdt/transformers/utils.py
./rdt/performance/datasets/datetime.py
./rdt/performance/datasets/numerical.py
./rdt/performance/datasets/__init__.py
./rdt/performance/datasets/text.py
./rdt/performance/datasets/base.py
./rdt/performance/datasets/categorical.py
./rdt/performance/datasets/boolean.py
./rdt/performance/datasets/utils.py
./rdt/performance/datasets/pii.py
./rdt/performance/__init__.py
./rdt/performance/profiling.py
./rdt/performance/performance.py
./rdt/__init__.py
./rdt/hyper_transformer.py
./rdt/errors.py
./tests/contributing.py
./tests/datasets/tests/test_boolean.py
./tests/datasets/tests/test_numerical.py
./tests/datasets/tests/test_categorical.py
./tests/datasets/tests/test_datetime.py
./tests/datasets/tests/test_utils.py
./tests/integration/transformers/__init__.py
./tests/integration/transformers/test_boolean.py
./tests/integration/transformers/pii/__init__.py
./tests/integration/transformers/pii/test_anonymizer.py
./tests/integration/transformers/test_numerical.py
./tests/integration/transformers/test_categorical.py
./tests/integration/transformers/test_text.py
./tests/integration/transformers/test_datetime.py
./tests/integration/transformers/test_base.py
./tests/integration/test_hyper_transformer.py
./tests/integration/__init__.py
./tests/integration/test_transformers.py
./tests/performance/__init__.py
./tests/performance/test_performance.py
./tests/performance/tests/__init__.py
./tests/performance/tests/test_profiling.py
./tests/__init__.py
./tests/unit/transformers/__init__.py
./tests/unit/transformers/test_boolean.py
./tests/unit/transformers/addons/identity/__init__.py
./tests/unit/transformers/addons/identity/test_identity.py
./tests/unit/transformers/addons/__init__.py
./tests/unit/transformers/pii/__init__.py
./tests/unit/transformers/pii/test_anonymizer.py
./tests/unit/transformers/pii/test_utils.py
./tests/unit/transformers/test_numerical.py
./tests/unit/transformers/test_null.py
./tests/unit/transformers/test_categorical.py
./tests/unit/transformers/test_text.py
./tests/unit/transformers/test___init__.py
./tests/unit/transformers/test_datetime.py
./tests/unit/transformers/test_base.py
./tests/unit/transformers/test_utils.py
./tests/unit/test_hyper_transformer.py
./tests/unit/__init__.py
./tests/unit/test___init__.py
./tests/code_style.py
./tests/quality/test_quality.py
./tests/quality/__init__.py
./tests/quality/utils.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/sdv-dev__RDT__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/Project-MONAI__MONAI__0.0 && find . -type f -name "*.py" | grep -v "test"
./research/coplenet-pneumonia-lesion-segmentation/run_inference.py
./research/coplenet-pneumonia-lesion-segmentation/coplenet.py
./research/coplenet-pneumonia-lesion-segmentation/__init__.py
./research/lamp-automated-model-parallelism/__init__.py
./research/lamp-automated-model-parallelism/data_utils.py
./research/lamp-automated-model-parallelism/train.py
./research/lamp-automated-model-parallelism/unet_pipe.py
./monai/application/__init__.py
./monai/application/utils.py
./monai/application/datasets.py
./monai/engines/trainer.py
./monai/engines/__init__.py
./monai/engines/workflow.py
./monai/engines/evaluator.py
./monai/engines/utils.py
./monai/engines/multi_gpu_supervised_trainer.py
./monai/handlers/lr_schedule_handler.py
./monai/handlers/mean_dice.py
./monai/handlers/validation_handler.py
./monai/handlers/__init__.py
./monai/handlers/roc_auc.py
./monai/handlers/utils.py
./monai/handlers/stats_handler.py
./monai/handlers/metric_logger.py
./monai/handlers/checkpoint_loader.py
./monai/handlers/segmentation_saver.py
./monai/handlers/tensorboard_handlers.py
./monai/handlers/checkpoint_saver.py
./monai/handlers/classification_saver.py
./monai/config/__init__.py
./monai/config/deviceconfig.py
./monai/config/type_definitions.py
./monai/inferers/__init__.py
./monai/inferers/utils.py
./monai/inferers/inferer.py
./monai/__init__.py
./monai/utils/__init__.py
./monai/utils/enums.py
./monai/utils/decorators.py
./monai/utils/misc.py
./monai/utils/module.py
./monai/utils/aliases.py
./monai/visualize/__init__.py
./monai/visualize/img2tensorboard.py
./monai/losses/focal_loss.py
./monai/losses/dice.py
./monai/losses/__init__.py
./monai/losses/tversky.py
./monai/data/synthetic.py
./monai/data/csv_saver.py
./monai/data/__init__.py
./monai/data/png_saver.py
./monai/data/utils.py
./monai/data/png_writer.py
./monai/data/dataloader.py
./monai/data/nifti_saver.py
./monai/data/nifti_writer.py
./monai/data/grid_dataset.py
./monai/data/decathalon_datalist.py
./monai/data/dataset.py
./monai/data/nifti_reader.py
./monai/transforms/__init__.py
./monai/transforms/io/array.py
./monai/transforms/io/dictionary.py
./monai/transforms/io/__init__.py
./monai/transforms/post/array.py
./monai/transforms/post/dictionary.py
./monai/transforms/post/__init__.py
./monai/transforms/utils.py
./monai/transforms/utility/array.py
./monai/transforms/utility/dictionary.py
./monai/transforms/utility/__init__.py
./monai/transforms/spatial/array.py
./monai/transforms/spatial/dictionary.py
./monai/transforms/spatial/__init__.py
./monai/transforms/intensity/array.py
./monai/transforms/intensity/dictionary.py
./monai/transforms/intensity/__init__.py
./monai/transforms/compose.py
./monai/transforms/croppad/array.py
./monai/transforms/croppad/dictionary.py
./monai/transforms/croppad/__init__.py
./monai/transforms/adaptors.py
./monai/networks/__init__.py
./monai/networks/nets/generator.py
./monai/networks/nets/unet.py
./monai/networks/nets/regressor.py
./monai/networks/nets/__init__.py
./monai/networks/nets/densenet.py
./monai/networks/nets/classifier.py
./monai/networks/nets/highresnet.py
./monai/networks/blocks/__init__.py
./monai/networks/blocks/upsample.py
./monai/networks/blocks/downsample.py
./monai/networks/blocks/convolutions.py
./monai/networks/blocks/squeeze_and_excitation.py
./monai/networks/blocks/aspp.py
./monai/networks/utils.py
./monai/networks/layers/factories.py
./monai/networks/layers/spatial_transforms.py
./monai/networks/layers/convutils.py
./monai/networks/layers/__init__.py
./monai/networks/layers/simplelayers.py
./monai/_version.py
./monai/metrics/rocauc.py
./monai/metrics/__init__.py
./monai/metrics/meandice.py
./versioneer.py
./examples/segmentation_3d_ignite/unet_training_array.py
./examples/segmentation_3d_ignite/unet_evaluation_array.py
./examples/segmentation_3d_ignite/unet_evaluation_dict.py
./examples/segmentation_3d_ignite/unet_training_dict.py
./examples/segmentation_3d/unet_training_array.py
./examples/segmentation_3d/unet_evaluation_array.py
./examples/segmentation_3d/unet_evaluation_dict.py
./examples/segmentation_3d/unet_training_dict.py
./examples/classification_3d/densenet_training_dict.py
./examples/classification_3d/densenet_training_array.py
./examples/classification_3d/densenet_evaluation_array.py
./examples/classification_3d/densenet_evaluation_dict.py
./examples/classification_3d_ignite/densenet_training_dict.py
./examples/classification_3d_ignite/densenet_training_array.py
./examples/classification_3d_ignite/densenet_evaluation_array.py
./examples/classification_3d_ignite/densenet_evaluation_dict.py
./examples/workflows/unet_evaluation_dict.py
./examples/workflows/unet_training_dict.py
./docs/source/conf.py
./setup.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/Project-MONAI__MONAI__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/HXLStandard__libhxl-python__0.0 && find . -type f -name "*.py" | grep -v test
./setup.py
./hxl/geo.py
./hxl/model.py
./hxl/input.py
./hxl/__init__.py
./hxl/scripts.py
./hxl/validation.py
./hxl/formulas/__init__.py
./hxl/formulas/lexer.py
./hxl/formulas/parser.py
./hxl/formulas/eval.py
./hxl/formulas/functions.py
./hxl/filters.py
./hxl/util.py
./hxl/datatypes.py
./hxl/converters.py
./profile/validation-profile.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/HXLStandard__libhxl-python__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/myokit__myokit__0.0 && find . -name "*.py" -not -path "*/tests/*" -exec grep -l "logging" {} \;
./myokit/_sim/cvodessim.py
./myokit/__init__.py
./myokit/lib/markov.py
./myokit/lib/hh.py
./myokit/_config.py
./myokit/__main__.py
./myokit/_datalog.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/myokit__myokit__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/rigetti__pyquil__0.0 && ls -R
.:
ACKNOWLEDGEMENTS.md  LICENSE      docker-compose.yaml  poetry.lock      test
CHANGELOG.md         MANIFEST.in  docs                 pyproject.toml
CONTRIBUTING.md      Makefile     entrypoint.sh        pyquil
Dockerfile           NOTICE.md    knope.toml           readthedocs.yml
Dockerfile.test      README.md    mypy.ini             scripts

./docs:
Makefile  make.bat  source

./docs/source:
_static              images                  quilt_getting_started.ipynb
_templates           index.rst               quilt_parametric.ipynb
advanced_usage.rst   introducing_v4.rst      quilt_raw_capture.ipynb
compiler.rst         noise.rst               quilt_waveforms.ipynb
conf.py              programs_and_gates.rst  the_quantum_computer.rst
exercises.rst        pyquil-objects.png      troubleshooting.rst
getting_started.rst  quilt.rst               wavefunction_simulator.rst

./docs/source/_static:
theme_overrides.css

./docs/source/_templates:
autosumm.rst  layout.html

./docs/source/images:
GateNoiseModels_14_1.png     acorn_connectivity.png      loop.png
GateNoiseModels_20_1.png     acorn_connectivity_16Q.png  output_4_1.png
MeyerPennyGame.png           acorn_coupling.png          qam.png
NoiseInvestigation_14_0.png  agave.png                   rabi_example.png
ReadoutNoise_10_1.png        agave_connectivity.png      ramsey_example.png
ReadoutNoise_19_1.png        agave_coupling.png          ramsey_fit.png
acorn.png                    bloch_1.png                 t1_example.png
acorn_16Q.png                branch.png

./pyquil:
__init__.py     external                paulis.py          quilbase.py
_version.py     gates.py                py.typed           quiltcalibrations.py
api             latex                   pyqvm.py           quiltwaveforms.py
conftest.py     noise.py                quantum_processor  simulation
diagnostics.py  noise_gates.py          quil.py            wavefunction.py
experiment      operator_estimation.py  quilatom.py

./pyquil/api:
__init__.py            _errors.py            _qvm.py
_abstract_compiler.py  _logger.py            _rewrite_arithmetic.py
_benchmark.py          _qam.py               _wavefunction_simulator.py
_compiler.py           _qpu.py
_compiler_client.py    _quantum_computer.py

./pyquil/experiment:
__init__.py      _group.py  _memory.py   _result.py   _symmetrization.py
_calibration.py  _main.py   _program.py  _setting.py

./pyquil/external:
README.md  __init__.py  rpcq.py

./pyquil/latex:
__init__.py  _diagram.py  _ipython.py  _main.py  latex_generation.py

./pyquil/quantum_processor:
__init__.py  _base.py  _isa.py  compiler.py  graph.py  qcs.py  transformers

./pyquil/quantum_processor/transformers:
__init__.py               graph_to_compiler_isa.py    qcs_isa_to_graph.py
compiler_isa_to_graph.py  qcs_isa_to_compiler_isa.py

./pyquil/simulation:
__init__.py  _numpy.py  _reference.py  matrices.py  tools.py

./scripts:
ci_install_deps

./test:
__init__.py  e2e  qcs_config  unit

./test/e2e:
__init__.py  conftest.py  test_e2e.py

./test/qcs_config:
secrets.toml  settings.toml

./test/unit:
__init__.py                  test_paulis_with_placeholders.py
__snapshots__                test_program.py
conftest.py                  test_qcs.py
data                         test_qpu.py
test_api.py                  test_quantum_computer.py
test_compiler.py             test_quil.py
test_compiler_client.py      test_quilatom.py
test_diagnostics.py          test_quilbase.py
test_gates.py                test_quilt.py
test_graph.py                test_qvm.py
test_group.py                test_reference_density.py
test_latex.py                test_reference_wavefunction.py
test_main.py                 test_result.py
test_matrices.py             test_rewrite_arithmetic.py
test_memory.py               test_rpcq.py
test_noise.py                test_setting.py
test_noise_gates.py          test_tools.py
test_numpy.py                test_wavefunction.py
test_operator_estimation.py  test_wavefunction_simulator.py
test_parameters.py           utils.py
test_paulis.py

./test/unit/__snapshots__:
test_api.ambr       test_program.ambr           test_quilbase.ambr
test_compiler.ambr  test_quantum_computer.ambr  test_quilt.ambr
test_main.ambr      test_quil.ambr
test_paulis.ambr    test_quilatom.ambr

./test/unit/data:
calibration_program_cz.quil         calibration_program_xy.quil  test1.json
calibration_program_cz_cphase.quil  compiler-isa-Aspen-8.json    test1.quil
calibration_program_measure.quil    qcs-isa-Aspen-8.json
calibration_program_rx.quil         rpcq_client_key

./test/unit/data/rpcq_client_key:
client_public.key[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/rigetti__pyquil__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/oasis-open__cti-python-stix2__0.0 && ls -R
.:
CHANGELOG        MANIFEST.in  examples          setup.py        tox.ini
CONTRIBUTING.md  README.rst   requirements.txt  stix2
LICENSE          docs         setup.cfg         stix2.egg-info

./docs:
Makefile    api          conf.py           guide      index.rst
_templates  api_ref.rst  contributing.rst  guide.rst  overview.rst

./docs/_templates:
autosummary

./docs/_templates/autosummary:
module.rst

./docs/api:
confidence            stix2.datastore.rst    stix2.properties.rst  v20
datastore             stix2.environment.rst  stix2.utils.rst       v21
markings              stix2.exceptions.rst   stix2.v20.rst
stix2.confidence.rst  stix2.markings.rst     stix2.v21.rst
stix2.core.rst        stix2.patterns.rst     stix2.workbench.rst

./docs/api/confidence:
stix2.confidence.scales.rst

./docs/api/datastore:
stix2.datastore.filesystem.rst  stix2.datastore.memory.rst
stix2.datastore.filters.rst     stix2.datastore.taxii.rst

./docs/api/markings:
stix2.markings.granular_markings.rst  stix2.markings.utils.rst
stix2.markings.object_markings.rst

./docs/api/v20:
stix2.v20.bundle.rst  stix2.v20.observables.rst  stix2.v20.sro.rst
stix2.v20.common.rst  stix2.v20.sdo.rst

./docs/api/v21:
stix2.v21.bundle.rst  stix2.v21.observables.rst  stix2.v21.sro.rst
stix2.v21.common.rst  stix2.v21.sdo.rst

./docs/guide:
creating.ipynb     equivalence.ipynb  parsing.ipynb      ts_support.ipynb
custom.ipynb       filesystem.ipynb   patterns.ipynb     versioning.ipynb
datastore.ipynb    markings.ipynb     serializing.ipynb  workbench.ipynb
environment.ipynb  memory.ipynb       taxii.ipynb

./examples:
taxii_example.py

./stix2:
__init__.py       datastore       pattern_visitor.py  v20
base.py           environment.py  patterns.py         v21
canonicalization  exceptions.py   properties.py       version.py
confidence        markings        test                workbench.py
custom.py         parsing.py      utils.py

./stix2/canonicalization:
Canonicalize.py  NumberToJson.py  __init__.py

./stix2/confidence:
__init__.py  scales.py

./stix2/datastore:
__init__.py  filesystem.py  filters.py  memory.py  taxii.py

./stix2/markings:
__init__.py  granular_markings.py  object_markings.py  utils.py

./stix2/test:
__init__.py  test_spec_version_detect.py  test_workbench.py  v20  v21

./stix2/test/v20:
__init__.py                   test_indicator.py
conftest.py                   test_intrusion_set.py
constants.py                  test_kill_chain_phases.py
stix2_data                    test_malware.py
test_attack_pattern.py        test_marking_definition.py
test_base.py                  test_markings.py
test_bundle.py                test_object_markings.py
test_campaign.py              test_observed_data.py
test_course_of_action.py      test_parsing.py
test_custom.py                test_pattern_expressions.py
test_datastore.py             test_pickle.py
test_datastore_composite.py   test_properties.py
test_datastore_filesystem.py  test_relationship.py
test_datastore_filters.py     test_report.py
test_datastore_memory.py      test_sighting.py
test_datastore_taxii.py       test_threat_actor.py
test_environment.py           test_tool.py
test_external_reference.py    test_utils.py
test_fixtures.py              test_versioning.py
test_granular_markings.py     test_vulnerability.py
test_identity.py

./stix2/test/v20/stix2_data:
attack-pattern    identity       malware             relationship
course-of-action  intrusion-set  marking-definition  tool

./stix2/test/v20/stix2_data/attack-pattern:
attack-pattern--0a3ead4e-6d47-4ccb-854c-a6a4f9d96b22
attack-pattern--0f20e3cb-245b-4a61-8a91-2d93f7cb0e9b
attack-pattern--774a3188-6ba9-4dc4-879d-d54ee48a5ce9
attack-pattern--7e150503-88e7-4861-866b-ff1ac82c4475
attack-pattern--ae676644-d2d2-41b7-af7e-9bed1b55898c
attack-pattern--b3d682b6-98f2-4fb0-aa3b-b4df007ca70a

./stix2/test/v20/stix2_data/attack-pattern/attack-pattern--0a3ead4e-6d47-4ccb-854c-a6a4f9d96b22:
20170531213019735010.json

./stix2/test/v20/stix2_data/attack-pattern/attack-pattern--0f20e3cb-245b-4a61-8a91-2d93f7cb0e9b:
20170531213026496201.json

./stix2/test/v20/stix2_data/attack-pattern/attack-pattern--774a3188-6ba9-4dc4-879d-d54ee48a5ce9:
20170531213029458940.json

./stix2/test/v20/stix2_data/attack-pattern/attack-pattern--7e150503-88e7-4861-866b-ff1ac82c4475:
20170531213045139269.json

./stix2/test/v20/stix2_data/attack-pattern/attack-pattern--ae676644-d2d2-41b7-af7e-9bed1b55898c:
20170531213041022897.json

./stix2/test/v20/stix2_data/attack-pattern/attack-pattern--b3d682b6-98f2-4fb0-aa3b-b4df007ca70a:
20170531213032662702.json

./stix2/test/v20/stix2_data/course-of-action:
course-of-action--95ddb356-7ba0-4bd9-a889-247262b8946f
course-of-action--d9727aee-48b8-4fdb-89e2-4c49746ba4dd

./stix2/test/v20/stix2_data/course-of-action/course-of-action--95ddb356-7ba0-4bd9-a889-247262b8946f:
20170531213026495974.json

./stix2/test/v20/stix2_data/course-of-action/course-of-action--d9727aee-48b8-4fdb-89e2-4c49746ba4dd:
20170531213041022744.json

./stix2/test/v20/stix2_data/identity:
identity--c78cb6e5-0c4b-4611-8297-d1b8b55e40b5

./stix2/test/v20/stix2_data/identity/identity--c78cb6e5-0c4b-4611-8297-d1b8b55e40b5:
20170601000000000000.json  20181101232448446000.json

./stix2/test/v20/stix2_data/intrusion-set:
intrusion-set--a653431d-6a5e-4600-8ad3-609b5af57064
intrusion-set--f3bdec95-3d62-42d9-a840-29630f6cdc1a

./stix2/test/v20/stix2_data/intrusion-set/intrusion-set--a653431d-6a5e-4600-8ad3-609b5af57064:
20170531213149412497.json

./stix2/test/v20/stix2_data/intrusion-set/intrusion-set--f3bdec95-3d62-42d9-a840-29630f6cdc1a:
20170531213153197755.json

./stix2/test/v20/stix2_data/malware:
malware--6b616fc1-1505-48e3-8b2c-0d19337bff38
malware--6b616fc1-1505-48e3-8b2c-0d19337bff38.json
malware--92ec0cbd-2c30-44a2-b270-73f4ec949841
malware--96b08451-b27a-4ff6-893f-790e26393a8e
malware--b42378e0-f147-496f-992a-26a49705395b

./stix2/test/v20/stix2_data/malware/malware--6b616fc1-1505-48e3-8b2c-0d19337bff38:
20170531213258226477.json  20181101232448456000.json  20181101232448457000.json

./stix2/test/v20/stix2_data/malware/malware--92ec0cbd-2c30-44a2-b270-73f4ec949841:
20170531213326565056.json

./stix2/test/v20/stix2_data/malware/malware--96b08451-b27a-4ff6-893f-790e26393a8e:
20170531213248482655.json

./stix2/test/v20/stix2_data/malware/malware--b42378e0-f147-496f-992a-26a49705395b:
20170531213215263882.json

./stix2/test/v20/stix2_data/marking-definition:
marking-definition--fa42a846-8d90-4e51-bc29-71d5b4802168.json

./stix2/test/v20/stix2_data/relationship:
relationship--0d4a7788-7f3b-4df8-a498-31a38003c883
relationship--0e55ee98-0c6d-43d4-b424-b18a0036b227
relationship--1e91cd45-a725-4965-abe3-700694374432
relationship--3a3084f9-0302-4fd5-9b8a-e0db10f5345e
relationship--3a3ed0b2-0c38-441f-ac40-53b873e545d1
relationship--592d0c31-e61f-495e-a60e-70d7be59a719
relationship--70dc6b5c-c524-429e-a6ab-0dd40f0482c1
relationship--8797579b-e3be-4209-a71b-255a4d08243d

./stix2/test/v20/stix2_data/relationship/relationship--0d4a7788-7f3b-4df8-a498-31a38003c883:
20170531213327182784.json

./stix2/test/v20/stix2_data/relationship/relationship--0e55ee98-0c6d-43d4-b424-b18a0036b227:
20170531213327082801.json

./stix2/test/v20/stix2_data/relationship/relationship--1e91cd45-a725-4965-abe3-700694374432:
20170531213327018782.json

./stix2/test/v20/stix2_data/relationship/relationship--3a3084f9-0302-4fd5-9b8a-e0db10f5345e:
20170531213327100701.json

./stix2/test/v20/stix2_data/relationship/relationship--3a3ed0b2-0c38-441f-ac40-53b873e545d1:
20170531213327143973.json

./stix2/test/v20/stix2_data/relationship/relationship--592d0c31-e61f-495e-a60e-70d7be59a719:
20170531213327021562.json

./stix2/test/v20/stix2_data/relationship/relationship--70dc6b5c-c524-429e-a6ab-0dd40f0482c1:
20170531213327044387.json

./stix2/test/v20/stix2_data/relationship/relationship--8797579b-e3be-4209-a71b-255a4d08243d:
20170531213327051532.json

./stix2/test/v20/stix2_data/tool:
tool--03342581-f790-4f03-ba41-e82e67392e23
tool--242f3da3-4425-4d11-8f5c-b842886da966

./stix2/test/v20/stix2_data/tool/tool--03342581-f790-4f03-ba41-e82e67392e23:
20170531213231601148.json

./stix2/test/v20/stix2_data/tool/tool--242f3da3-4425-4d11-8f5c-b842886da966:
20170531213212684914.json

./stix2/test/v21:
__init__.py                   test_intrusion_set.py
conftest.py                   test_kill_chain_phases.py
constants.py                  test_language_content.py
stix2_data                    test_location.py
test_attack_pattern.py        test_malware.py
test_base.py                  test_malware_analysis.py
test_bundle.py                test_marking_definition.py
test_campaign.py              test_markings.py
test_confidence.py            test_note.py
test_course_of_action.py      test_object_markings.py
test_custom.py                test_observed_data.py
test_datastore.py             test_opinion.py
test_datastore_composite.py   test_parsing.py
test_datastore_filesystem.py  test_pattern_expressions.py
test_datastore_filters.py     test_pickle.py
test_datastore_memory.py      test_properties.py
test_datastore_taxii.py       test_relationship.py
test_deterministic_ids.py     test_report.py
test_environment.py           test_sighting.py
test_external_reference.py    test_threat_actor.py
test_fixtures.py              test_timestamp_precision.py
test_granular_markings.py     test_tool.py
test_grouping.py              test_utils.py
test_identity.py              test_versioning.py
test_indicator.py             test_vulnerability.py
test_infrastructure.py

./stix2/test/v21/stix2_data:
attack-pattern    directory  intrusion-set  marking-definition  tool
course-of-action  identity   malware        relationship

./stix2/test/v21/stix2_data/attack-pattern:
attack-pattern--0a3ead4e-6d47-4ccb-854c-a6a4f9d96b22
attack-pattern--0f20e3cb-245b-4a61-8a91-2d93f7cb0e9b
attack-pattern--774a3188-6ba9-4dc4-879d-d54ee48a5ce9
attack-pattern--7e150503-88e7-4861-866b-ff1ac82c4475
attack-pattern--ae676644-d2d2-41b7-af7e-9bed1b55898c
attack-pattern--b3d682b6-98f2-4fb0-aa3b-b4df007ca70a

./stix2/test/v21/stix2_data/attack-pattern/attack-pattern--0a3ead4e-6d47-4ccb-854c-a6a4f9d96b22:
20170531213019735010.json

./stix2/test/v21/stix2_data/attack-pattern/attack-pattern--0f20e3cb-245b-4a61-8a91-2d93f7cb0e9b:
20170531213026496201.json

./stix2/test/v21/stix2_data/attack-pattern/attack-pattern--774a3188-6ba9-4dc4-879d-d54ee48a5ce9:
20170531213029458940.json

./stix2/test/v21/stix2_data/attack-pattern/attack-pattern--7e150503-88e7-4861-866b-ff1ac82c4475:
20170531213045139269.json

./stix2/test/v21/stix2_data/attack-pattern/attack-pattern--ae676644-d2d2-41b7-af7e-9bed1b55898c:
20170531213041022897.json

./stix2/test/v21/stix2_data/attack-pattern/attack-pattern--b3d682b6-98f2-4fb0-aa3b-b4df007ca70a:
20170531213032662702.json

./stix2/test/v21/stix2_data/course-of-action:
course-of-action--95ddb356-7ba0-4bd9-a889-247262b8946f
course-of-action--d9727aee-48b8-4fdb-89e2-4c49746ba4dd

./stix2/test/v21/stix2_data/course-of-action/course-of-action--95ddb356-7ba0-4bd9-a889-247262b8946f:
20170531213026495974.json

./stix2/test/v21/stix2_data/course-of-action/course-of-action--d9727aee-48b8-4fdb-89e2-4c49746ba4dd:
20170531213041022744.json

./stix2/test/v21/stix2_data/directory:
directory--572827aa-e0cd-44fd-afd5-a717a7585f39.json

./stix2/test/v21/stix2_data/identity:
identity--c78cb6e5-0c4b-4611-8297-d1b8b55e40b5

./stix2/test/v21/stix2_data/identity/identity--c78cb6e5-0c4b-4611-8297-d1b8b55e40b5:
20170601000000000000.json  20181101232448446000.json

./stix2/test/v21/stix2_data/intrusion-set:
intrusion-set--a653431d-6a5e-4600-8ad3-609b5af57064
intrusion-set--f3bdec95-3d62-42d9-a840-29630f6cdc1a

./stix2/test/v21/stix2_data/intrusion-set/intrusion-set--a653431d-6a5e-4600-8ad3-609b5af57064:
20170531213149412497.json

./stix2/test/v21/stix2_data/intrusion-set/intrusion-set--f3bdec95-3d62-42d9-a840-29630f6cdc1a:
20170531213153197755.json

./stix2/test/v21/stix2_data/malware:
malware--6b616fc1-1505-48e3-8b2c-0d19337bff38
malware--6b616fc1-1505-48e3-8b2c-0d19337bff38.json
malware--92ec0cbd-2c30-44a2-b270-73f4ec949841
malware--96b08451-b27a-4ff6-893f-790e26393a8e
malware--b42378e0-f147-496f-992a-26a49705395b

./stix2/test/v21/stix2_data/malware/malware--6b616fc1-1505-48e3-8b2c-0d19337bff38:
20170531213258226477.json  20181101232448456000.json  20181101232448457000.json

./stix2/test/v21/stix2_data/malware/malware--92ec0cbd-2c30-44a2-b270-73f4ec949841:
20170531213326565056.json

./stix2/test/v21/stix2_data/malware/malware--96b08451-b27a-4ff6-893f-790e26393a8e:
20170531213248482655.json

./stix2/test/v21/stix2_data/malware/malware--b42378e0-f147-496f-992a-26a49705395b:
20170531213215263882.json

./stix2/test/v21/stix2_data/marking-definition:
marking-definition--fa42a846-8d90-4e51-bc29-71d5b4802168.json

./stix2/test/v21/stix2_data/relationship:
relationship--0d4a7788-7f3b-4df8-a498-31a38003c883
relationship--0e55ee98-0c6d-43d4-b424-b18a0036b227
relationship--1e91cd45-a725-4965-abe3-700694374432
relationship--3a3084f9-0302-4fd5-9b8a-e0db10f5345e
relationship--3a3ed0b2-0c38-441f-ac40-53b873e545d1
relationship--592d0c31-e61f-495e-a60e-70d7be59a719
relationship--70dc6b5c-c524-429e-a6ab-0dd40f0482c1
relationship--8797579b-e3be-4209-a71b-255a4d08243d

./stix2/test/v21/stix2_data/relationship/relationship--0d4a7788-7f3b-4df8-a498-31a38003c883:
20170531213327182784.json

./stix2/test/v21/stix2_data/relationship/relationship--0e55ee98-0c6d-43d4-b424-b18a0036b227:
20170531213327082801.json

./stix2/test/v21/stix2_data/relationship/relationship--1e91cd45-a725-4965-abe3-700694374432:
20170531213327018782.json

./stix2/test/v21/stix2_data/relationship/relationship--3a3084f9-0302-4fd5-9b8a-e0db10f5345e:
20170531213327100701.json

./stix2/test/v21/stix2_data/relationship/relationship--3a3ed0b2-0c38-441f-ac40-53b873e545d1:
20170531213327143973.json

./stix2/test/v21/stix2_data/relationship/relationship--592d0c31-e61f-495e-a60e-70d7be59a719:
20170531213327021562.json

./stix2/test/v21/stix2_data/relationship/relationship--70dc6b5c-c524-429e-a6ab-0dd40f0482c1:
20170531213327044387.json

./stix2/test/v21/stix2_data/relationship/relationship--8797579b-e3be-4209-a71b-255a4d08243d:
20170531213327051532.json

./stix2/test/v21/stix2_data/tool:
tool--03342581-f790-4f03-ba41-e82e67392e23
tool--242f3da3-4425-4d11-8f5c-b842886da966

./stix2/test/v21/stix2_data/tool/tool--03342581-f790-4f03-ba41-e82e67392e23:
20170531213231601148.json

./stix2/test/v21/stix2_data/tool/tool--242f3da3-4425-4d11-8f5c-b842886da966:
20170531213212684914.json

./stix2/v20:
__init__.py  base.py  bundle.py  common.py  observables.py  sdo.py  sro.py

./stix2/v21:
__init__.py  base.py  bundle.py  common.py  observables.py  sdo.py  sro.py

./stix2.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/oasis-open__cti-python-stix2__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -R /workspace/equinor__flownet__0.0
/workspace/equinor__flownet__0.0:
CHANGELOG.md     LICENSE    apt_install.sh  setup.py  tests
CONTRIBUTING.md  README.md  docs            src

/workspace/equinor__flownet__0.0/docs:
Makefile     brugge_model_example.rst  index.rst
_config.yml  conf.py                   introduction.rst
_static      configuration_file.rst    norne_model_example.rst
about.rst    egg_model_example.rst
api.rst      examples.rst

/workspace/equinor__flownet__0.0/docs/_static:
equinor-logo.svg     flownet_model.svg  webviz_results_egg_model.png
flownet-concept.svg  sintef-logo.svg
flownet_logo.svg     tno-logo.svg

/workspace/equinor__flownet__0.0/src:
flownet  flownet.egg-info

/workspace/equinor__flownet__0.0/src/flownet:
__init__.py       config_parser  hyperparameter  prediction   templates
_command_line.py  data           network_model   realization  utils
ahm               ert            parameters      static

/workspace/equinor__flownet__0.0/src/flownet/ahm:
__init__.py                  _assisted_history_matching.py
_ahm_iteration_analytics.py  _run_ahm.py

/workspace/equinor__flownet__0.0/src/flownet/config_parser:
__init__.py        _config_parser_hyperparam.py  _merge_configs.py
_config_parser.py  _config_parser_pred.py

/workspace/equinor__flownet__0.0/src/flownet/data:
__init__.py  from_flow.py  from_pdm.py  from_source.py  perforation_strategy.py

/workspace/equinor__flownet__0.0/src/flownet/ert:
FLOW_SIMULATION  _create_ert_setup.py          _flow_job.py
__init__.py      _create_synthetic_refcase.py  _run_subprocess.py

/workspace/equinor__flownet__0.0/src/flownet/hyperparameter:
__init__.py  _run_hyper.py

/workspace/equinor__flownet__0.0/src/flownet/network_model:
__init__.py       _generate_connections.py  _network_model.py
_create_egrid.py  _mitchell.py              _one_dimensional_model.py

/workspace/equinor__flownet__0.0/src/flownet/parameters:
__init__.py         _fault_transmissibility.py  _rock_compressibility.py
_aquifer.py         _permeability.py            probability_distributions.py
_base_parameter.py  _porv_poro_trans.py
_equilibration.py   _relative_permeability.py

/workspace/equinor__flownet__0.0/src/flownet/prediction:
__init__.py  _run_pred.py

/workspace/equinor__flownet__0.0/src/flownet/realization:
__init__.py             _schedule.py             _simulation_realization.py
_render_realization.py  _simulation_keywords.py

/workspace/equinor__flownet__0.0/src/flownet/static:
CREATE_FLOWNET_MODEL                   SAVE_ITERATION_PARAMETERS_WORKFLOW
DELETE_IN_CURRENT_ITERATION            SAVE_ITERATION_PARAMETERS_WORKFLOW_JOB
PROPS.inc                              SOLUTION.inc
SAVE_ITERATION_ANALYTICS_WORKFLOW      SUMMARY.inc
SAVE_ITERATION_ANALYTICS_WORKFLOW_JOB

/workspace/equinor__flownet__0.0/src/flownet/templates:
EQUIL.jinja2                 THPRES.jinja2
FAULTS.inc.jinja2            ahm_config.ert.jinja2
HISTORY_SCHEDULE.inc.jinja2  common_config.ert.jinja2
MULTFLT.inc.jinja2           observations.ertobs.jinja2
NNC.inc.jinja2               observations.yamlobs.jinja2
NUMERICAL_AQUIFER.jinja2     pred_config.ert.jinja2
ROCK.jinja2                  webviz_ahm_config.yml.jinja2
RSVD.jinja2                  webviz_pred_config.yml.jinja2
TEMPLATE_MODEL.DATA.jinja2

/workspace/equinor__flownet__0.0/src/flownet/utils:
__init__.py   kriging.py     types.py
constants.py  raytracing.py  write_grdecl_file.py

/workspace/equinor__flownet__0.0/src/flownet.egg-info:
PKG-INFO     dependency_links.txt  not-zip-safe  top_level.txt
SOURCES.txt  entry_points.txt      requires.txt

/workspace/equinor__flownet__0.0/tests:
__init__.py                          test_mitchell.py
configs                              test_normalize_data.py
data                                 test_one_dimensional.py
observation_files                    test_perforation_strategies.py
test_calculation_accuracy_metric.py  test_prepare_flownet_data.py
test_check_obsfiles_ert_yaml.py      test_prepare_opm_ref_data.py
test_config_parser.py                test_prepare_opm_reference_data.py
test_data_flow.py                    test_probability_distributions.py
test_generate_connections.py         test_single_cell.py
test_merge_configs.py                tests_multiple_one_dimensional.py

/workspace/equinor__flownet__0.0/tests/configs:
missing_arguments.yml

/workspace/equinor__flownet__0.0/tests/data:
well_perforations_2layers.csv

/workspace/equinor__flownet__0.0/tests/observation_files:
ProductionData.csv[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/equinor__flownet__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/myokit__myokit__0.0 && find . -type f -name "*.py" | grep -v "test"
./docs/source/conf.py
./setup.py
./.github/workflows/select-opencl-device.py
./myokit/_expressions.py
./myokit/_sim/cable.py
./myokit/_sim/sundials.py
./myokit/_sim/__init__.py
./myokit/_sim/opencl.py
./myokit/_sim/cvodessim.py
./myokit/_sim/fiber_tissue.py
./myokit/_sim/compiler.py
./myokit/_sim/openclsim.py
./myokit/_sim/rhs.py
./myokit/_sim/jacobian.py
./myokit/_sim/cmodel.py
./myokit/_err.py
./myokit/_io.py
./myokit/__init__.py
./myokit/units.py
./myokit/_protocol.py
./myokit/_myokit_version.py
./myokit/lib/deps.py
./myokit/lib/markov.py
./myokit/lib/__init__.py
./myokit/lib/guess.py
./myokit/lib/plots.py
./myokit/lib/multi.py
./myokit/lib/hh.py
./myokit/_system.py
./myokit/_config.py
./myokit/tools.py
./myokit/formats/cuda/_exporter.py
./myokit/formats/cuda/__init__.py
./myokit/formats/cuda/_ewriter.py
./myokit/formats/python/_exporter.py
./myokit/formats/python/__init__.py
./myokit/formats/python/template/sim.py
./myokit/formats/python/_ewriter.py
./myokit/formats/sbml/__init__.py
./myokit/formats/sbml/_importer.py
./myokit/formats/sbml/_api.py
./myokit/formats/sbml/_parser.py
./myokit/formats/axon/__init__.py
./myokit/formats/axon/_importer.py
./myokit/formats/axon/_atf.py
./myokit/formats/axon/_abf.py
./myokit/formats/sympy/__init__.py
./myokit/formats/sympy/_ewriter.py
./myokit/formats/sympy/_ereader.py
./myokit/formats/__init__.py
./myokit/formats/wcp/__init__.py
./myokit/formats/wcp/_wcp.py
./myokit/formats/stan/_exporter.py
./myokit/formats/stan/__init__.py
./myokit/formats/stan/template/run.py
./myokit/formats/stan/_ewriter.py
./myokit/formats/cpp/__init__.py
./myokit/formats/cpp/_ewriter.py
./myokit/formats/easyml/_exporter.py
./myokit/formats/easyml/__init__.py
./myokit/formats/easyml/_ewriter.py
./myokit/formats/latex/_exporter.py
./myokit/formats/latex/__init__.py
./myokit/formats/latex/_ewriter.py
./myokit/formats/matlab/_exporter.py
./myokit/formats/matlab/__init__.py
./myokit/formats/matlab/_ewriter.py
./myokit/formats/mathml/__init__.py
./myokit/formats/mathml/_ewriter.py
./myokit/formats/mathml/_parser.py
./myokit/formats/cellml/_exporter.py
./myokit/formats/cellml/__init__.py
./myokit/formats/cellml/v1/__init__.py
./myokit/formats/cellml/v1/_api.py
./myokit/formats/cellml/v1/_writer.py
./myokit/formats/cellml/v1/_parser.py
./myokit/formats/cellml/_importer.py
./myokit/formats/cellml/_ewriter.py
./myokit/formats/cellml/v2/__init__.py
./myokit/formats/cellml/v2/_api.py
./myokit/formats/cellml/v2/_writer.py
./myokit/formats/cellml/v2/_parser.py
./myokit/formats/channelml/__init__.py
./myokit/formats/channelml/_importer.py
./myokit/formats/opencl/_exporter.py
./myokit/formats/opencl/__init__.py
./myokit/formats/opencl/template/plot.py
./myokit/formats/opencl/template/minilog.py
./myokit/formats/opencl/_ewriter.py
./myokit/formats/xml/_exporter.py
./myokit/formats/xml/__init__.py
./myokit/formats/xml/_split.py
./myokit/formats/html/_flatten.py
./myokit/formats/html/_exporter.py
./myokit/formats/html/__init__.py
./myokit/formats/ansic/_exporter.py
./myokit/formats/ansic/__init__.py
./myokit/formats/ansic/_ewriter.py
./myokit/__main__.py
./myokit/_model_api.py
./myokit/_unit.py
./myokit/_aux.py
./myokit/pype.py
./myokit/gui/datablock_viewer.py
./myokit/gui/__init__.py
./myokit/gui/source.py
./myokit/gui/progress.py
./myokit/gui/ide.py
./myokit/gui/explorer.py
./myokit/gui/vargrapher.py
./myokit/gui/datalog_viewer.py
./myokit/pacing.py
./myokit/float.py
./myokit/_datalog.py
./myokit/_parsing.py
./myokit/_progress.py
./myokit/_datablock.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/myokit__myokit__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -la /workspace/fast-aircraft-design__FAST-OAD__0.0
total 324
drwxr-xr-x 10 root root   4096 Feb  5 08:10 .
drwxrwxr-x  3 root root   4096 Feb  5 08:10 ..
drwxr-xr-x  2 root root   4096 Feb  5 08:10 .PyCharmRunConfs
-rw-rw-r--  1 root root    112 Feb  5 08:10 .codacy.yml
-rw-rw-r--  1 root root     70 Feb  5 08:10 .codeclimate.yml
drwxr-xr-x  5 root root   4096 Feb  5 08:12 .git
drwxr-xr-x  4 root root   4096 Feb  5 07:50 .github
-rw-rw-r--  1 root root    623 Feb  5 08:10 .gitignore
-rw-rw-r--  1 root root    511 Feb  5 08:10 .pre-commit-config.yaml
-rw-rw-r--  1 root root  17590 Feb  5 08:10 .pylintrc
-rw-rw-r--  1 root root    564 Feb  5 08:10 .readthedocs.yaml
-rw-rw-r--  1 root root    189 Feb  5 08:10 AUTHORS.rst
-rw-rw-r--  1 root root   8658 Feb  5 08:10 CHANGELOG.rst
-rw-rw-r--  1 root root  32472 Feb  5 08:10 LICENSE.txt
-rw-rw-r--  1 root root    208 Feb  5 08:10 MANIFEST.in
-rw-rw-r--  1 root root   2847 Feb  5 08:10 README.md
drwxr-xr-x  2 root root   4096 Feb  5 08:10 binder
-rw-rw-r--  1 root root    572 Feb  5 08:10 codecov.yml
drwxr-xr-x  2 root root   4096 Feb  5 08:10 devutils
drwxr-xr-x  5 root root   4096 Feb  5 08:10 docs
-rw-rw-r--  1 root root 177916 Feb  5 08:10 poetry.lock
-rw-rw-r--  1 root root   3562 Feb  5 08:10 pyproject.toml
drwxr-xr-x  3 root root   4096 Feb  5 08:10 src
drwxr-xr-x  4 root root   4096 Feb  5 08:10 tests
-rw-rw-r--  1 root root    379 Feb  5 08:10 tox.ini[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/fast-aircraft-design__FAST-OAD__0.0 #
[Command finished with exit code 0]