Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/fmi-faim__faim-ipa__0.0 && ls -R
.:
LICENSE  README.md  examples  pyproject.toml  resources  src  tests

./examples:
'Add Segmentation.ipynb'
 CellVoyagerStackAcquisitionExample.py
'Create MoBIE Project.ipynb'
 ImageXpressSinglePlaneAcquisitionExample.py
 ImageXpressStackAcquisitionExample.py
'Inspect Zarr.ipynb'
 zarr-files

./examples/zarr-files:

./resources:
CV8000  ImageXpress  legacy_hist.npz

./resources/CV8000:
CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_20230918_135839

./resources/CV8000/CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_20230918_135839:
CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack  TRACE2023-XX-XX.log
TRACE-incomplete.log

./resources/CV8000/CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_20230918_135839/CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack:
 1009680001_Cellvis_#P96-1.5H-N.wpp
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack.wpi
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F001L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F002L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F003L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_D08_T0001F004L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F001L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F002L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F003L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_E03_T0001F004L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F001L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F002L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F003L01A02Z04C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A01Z01C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A01Z02C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A01Z03C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A01Z04C01.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A02Z01C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A02Z02C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A02Z03C02.tif
 CV8000-Minimal-DataSet-2C-3W-4S-FP2-stack_F08_T0001F004L01A02Z04C02.tif
 DC_DCAM#1_CAM3.tif
 DC_DCAM#2_CAM4.tif
 MeasurementData.mlf
 MeasurementDetail.mrf
 Minimal-3C3W2S-FP2-stack.mes
'SC_BP445-45_20x v2_M01_CH01.tif'
'SC_BP525-50_20x v2_M01_CH02.tif'
'SC_BP600-37_20x v2_M01_CH03.tif'
'SC_BP676-29_20x v2_M01_CH04.tif'
 crosstalk_parameter.xml
 geometry_parameter.xml

./resources/ImageXpress:
1well-3C-2S-Zmix-T  SingleChannel
Projection-Mix      exp126-d0_C03_thumbA6B0784C-19ED-4F35-9E6A-0A306794BB11.tif

./resources/ImageXpress/1well-3C-2S-Zmix-T:
2024-04-22

./resources/ImageXpress/1well-3C-2S-Zmix-T/2024-04-22:
1697

./resources/ImageXpress/1well-3C-2S-Zmix-T/2024-04-22/1697:
TimePoint_1  TimePoint_2

./resources/ImageXpress/1well-3C-2S-Zmix-T/2024-04-22/1697/TimePoint_1:
1well-3C-2S-Zmix-T_C07_s1_w1D5F8F51A-3E85-4358-AE51-A465AF87386F.tif
1well-3C-2S-Zmix-T_C07_s1_w2DEF08320-F169-4D37-9B69-B2808D75614E.tif
1well-3C-2S-Zmix-T_C07_s1_w3AA847666-9AC4-4326-A184-8FC928D4368A.tif
1well-3C-2S-Zmix-T_C07_s2_w1EADF08BD-3BFB-44F3-8214-24B191F3D15C.tif
1well-3C-2S-Zmix-T_C07_s2_w29E8DE988-C6EC-49A6-8D1B-2BC852EA11E9.tif
1well-3C-2S-Zmix-T_C07_s2_w389413C08-5937-4585-B174-F903865B076F.tif

./resources/ImageXpress/1well-3C-2S-Zmix-T/2024-04-22/1697/TimePoint_2:
1well-3C-2S-Zmix-T_C07_s1_w1401562CF-BD52-4C90-A944-83185F26B372.tif
1well-3C-2S-Zmix-T_C07_s1_w2F6580B3E-0AC4-4968-81C5-BB26AA5F6981.tif
1well-3C-2S-Zmix-T_C07_s1_w3A9E4E910-281E-4C24-96FB-36EAFA13348B.tif
1well-3C-2S-Zmix-T_C07_s2_w1E6301319-2DF7-4022-B582-8BC88E254115.tif
1well-3C-2S-Zmix-T_C07_s2_w2C12DAE22-104C-45A9-826F-A3C4BFF02513.tif
1well-3C-2S-Zmix-T_C07_s2_w3612E2F5A-EDA4-45D6-AEBE-8BB16710CDD5.tif

./resources/ImageXpress/Projection-Mix:
2023-02-21

./resources/ImageXpress/Projection-Mix/2023-02-21:
1334

./resources/ImageXpress/Projection-Mix/2023-02-21/1334:
Projection-Mix_E07_s1_w1E94C24BD-45E4-450A-9919-257C714278F7.tif
Projection-Mix_E07_s1_w1_thumb4BFD4018-E675-475E-B5AB-2E959E6B6DA1.tif
Projection-Mix_E07_s1_w2B14915F6-0679-4494-82D1-F80894B32A66.tif
Projection-Mix_E07_s1_w2_thumbE5A6D08C-AF44-4CA9-A6E8-7DC9BC9565F2.tif
Projection-Mix_E07_s1_w3BB87F860-FC67-4B3A-A740-A9EACF8A8F5F.tif
Projection-Mix_E07_s1_w3_thumbD739A948-8CA4-4559-910C-79D42CEC98A0.tif
Projection-Mix_E07_s2_w1DCFD1526-D063-4F8B-9E51-F1BD2EBD9F1A.tif
Projection-Mix_E07_s2_w1_thumbE4903920-91AA-405E-A39B-6EB284EA48E5.tif
Projection-Mix_E07_s2_w2607EE13F-AB5E-4E8C-BC4B-52E1118E7723.tif
Projection-Mix_E07_s2_w2_thumb15675A28-B45B-42E9-802C-833005E72657.tif
Projection-Mix_E07_s2_w3B0A47337-5945-4B26-9F5F-4EBA468CDBA9.tif
Projection-Mix_E07_s2_w3_thumbE3E91A92-3DD7-4EF5-BC32-8F5EF95B2CCA.tif
Projection-Mix_E08_s1_w117654C10-92F1-4DFD-98AA-6A01BBD77557.tif
Projection-Mix_E08_s1_w1_thumbD59B8F66-7743-4113-B6A2-8899FD53C3C8.tif
Projection-Mix_E08_s1_w281928711-999D-41F6-B88C-999513D4C092.tif
Projection-Mix_E08_s1_w2_thumb6D866DBC-F5F2-41D3-BEDD-28BEEB281FDD.tif
Projection-Mix_E08_s1_w3DD77D22D-07CB-4529-A1F5-DCC5473786FA.tif
Projection-Mix_E08_s1_w3_thumb615741CD-A218-4C30-BC79-E62A9D675DF5.tif
Projection-Mix_E08_s2_w1B38C01F5-0D36-4A29-9F5A-BE62B6F7F73F.tif
Projection-Mix_E08_s2_w1_thumbC7F53295-5DB8-4989-9E25-DD1068A2E266.tif
Projection-Mix_E08_s2_w266923EBB-9960-4952-8955-D1721D112EE2.tif
Projection-Mix_E08_s2_w2_thumb49A20B6B-1B86-47F1-B5FA-C22B47D2590D.tif
Projection-Mix_E08_s2_w3CCE83D85-0912-429E-9F18-716A085BB5BC.tif
Projection-Mix_E08_s2_w3_thumb4D88636E-181E-4AF6-BC53-E7A435959C8F.tif
ZStep_1
ZStep_10
ZStep_2
ZStep_3
ZStep_4
ZStep_5
ZStep_6
ZStep_7
ZStep_8
ZStep_9

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_1:
Projection-Mix_E07_s1_w1E78EB128-BD0D-4D94-A6AD-3FF28BB1B105.tif
Projection-Mix_E07_s1_w1_thumb187DE64B-038A-4671-BF6B-683721723769.tif
Projection-Mix_E07_s1_w2C0A49256-E289-4C0F-ADC9-F7728ABDB141.tif
Projection-Mix_E07_s1_w2_thumb57D4B151-71BF-480E-8CC4-C23A2690B763.tif
Projection-Mix_E07_s1_w427CCB2E4-1BF4-45E7-8BC7-264B48EF9C4A.tif
Projection-Mix_E07_s1_w4_thumb555647D0-77F1-4A43-9472-AE509F95E236.tif
Projection-Mix_E07_s2_w1AC08A410-4276-4921-9FDA-9CB1249B3156.tif
Projection-Mix_E07_s2_w1_thumb46044950-C3E6-461B-9AB9-1867D7F7D1AC.tif
Projection-Mix_E07_s2_w2045200D6-DAE1-4224-AFDE-9EFD107D85EB.tif
Projection-Mix_E07_s2_w2_thumbCD7C9662-238B-4150-98E7-7629D04269B0.tif
Projection-Mix_E07_s2_w4F95A8A9F-0939-47C2-8D3E-F6E91AF0C4ED.tif
Projection-Mix_E07_s2_w4_thumbBB7F29BD-82FF-4619-9443-ED76D26F668A.tif
Projection-Mix_E08_s1_w1D73270D7-0918-4C49-8F3D-31C031A588ED.tif
Projection-Mix_E08_s1_w1_thumb37EAA531-2894-4B96-AAD5-8B2F4CDED738.tif
Projection-Mix_E08_s1_w2E9C399F7-6BA9-41D3-9CB8-632E37269E6E.tif
Projection-Mix_E08_s1_w2_thumb43C82B83-6BBA-446A-9080-272B6974896D.tif
Projection-Mix_E08_s1_w44D67DA59-1149-4181-BDFD-2FA0CCC9E573.tif
Projection-Mix_E08_s1_w4_thumb50624237-C6D3-442D-A22E-AF1EB869C459.tif
Projection-Mix_E08_s2_w1084F795E-D6CB-4229-8A96-B5540E18EC20.tif
Projection-Mix_E08_s2_w1_thumb18DE71C8-9016-43DC-A15C-C3754C6E1685.tif
Projection-Mix_E08_s2_w271F9FAE3-CF6E-43CE-84E0-2506B2C908E3.tif
Projection-Mix_E08_s2_w2_thumbE7071D88-B3EF-4169-860A-DA95D3386A0C.tif
Projection-Mix_E08_s2_w4D0500431-D435-4AB7-BAC9-70316FD75E2F.tif
Projection-Mix_E08_s2_w4_thumbD2785594-4F49-464F-9F80-1B82E30A560A.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_10:
Projection-Mix_E07_s1_w11D01380B-E7DA-4C09-A343-EDA3D235D808.tif
Projection-Mix_E07_s1_w1_thumb16F6E9D3-12E4-426F-A4BF-9AD5D23A000F.tif
Projection-Mix_E07_s1_w27FF63331-0307-4A31-89AC-B363F8BCED7A.tif
Projection-Mix_E07_s1_w2_thumb55E0167A-3CFE-4E67-AC0B-A1A900FC9CF6.tif
Projection-Mix_E07_s2_w12BFD0E01-D7F8-4596-8904-3209AD741437.tif
Projection-Mix_E07_s2_w1_thumb6F13EC7B-89B8-4720-9E33-5D56699B2ED0.tif
Projection-Mix_E07_s2_w20DB41161-451B-4A8B-9DA6-8E9C7D56D30E.tif
Projection-Mix_E07_s2_w2_thumbAF5EB66F-8476-4520-865B-D74FE5AE5CE2.tif
Projection-Mix_E08_s1_w1F11777E5-3795-4B08-BB89-F854F3414F88.tif
Projection-Mix_E08_s1_w1_thumbE57B9E91-5584-4A7A-8D1B-9E4C0F263742.tif
Projection-Mix_E08_s1_w2D6F71AC1-8418-4C24-94A2-A273E706891B.tif
Projection-Mix_E08_s1_w2_thumb5F0241E5-6AE0-45A8-A464-65E6B71F2FB3.tif
Projection-Mix_E08_s2_w1E84FADEE-6DCE-4646-8329-F841B2D45415.tif
Projection-Mix_E08_s2_w1_thumbED8582E8-6F5A-4639-86F1-E98C869814C2.tif
Projection-Mix_E08_s2_w2BB584250-EC8C-49E1-98F3-93113F70C320.tif
Projection-Mix_E08_s2_w2_thumb912362B1-19FE-40C6-A7DC-DAE2CC83872B.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_2:
Projection-Mix_E07_s1_w189A35A04-20E3-47AD-A1F9-8065B2840EFD.tif
Projection-Mix_E07_s1_w1_thumb4D84758D-8ADA-45CE-A039-8A55AD05BFF9.tif
Projection-Mix_E07_s1_w282ED0DF4-8188-48BB-944C-03B905E1C50A.tif
Projection-Mix_E07_s1_w2_thumb8764388C-D7B5-4E2A-A197-86CA7DFEA22F.tif
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Projection-Mix_E07_s2_w22EED77C5-EDAC-4C4E-A6CF-ACF66B64D4C4.tif
Projection-Mix_E07_s2_w2_thumb612C5B8E-F613-4B2F-B750-1319AC53D0EE.tif
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Projection-Mix_E08_s1_w1_thumb30FB8677-6F77-42DA-8A04-1BF4D0E4CF17.tif
Projection-Mix_E08_s1_w236A5558C-759F-4795-8F7C-66A308924F8E.tif
Projection-Mix_E08_s1_w2_thumb0A72488A-1D98-432C-B4D3-AA5CB6A2972F.tif
Projection-Mix_E08_s2_w1E7EC7EF1-C7B0-4CB0-8CC3-AAEEC1C5E8B2.tif
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Projection-Mix_E08_s2_w2D953551C-C84C-4409-8FD0-B517F1FF7207.tif
Projection-Mix_E08_s2_w2_thumbB4EC956A-8CAC-40D9-A5B3-26D87003726F.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_3:
Projection-Mix_E07_s1_w1B9AD8C2D-0576-48DC-86A5-C6AE4AD33802.tif
Projection-Mix_E07_s1_w1_thumbC4F36E6F-21C6-42D6-AF11-44BEDB4C2346.tif
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Projection-Mix_E07_s1_w2_thumbA8643506-4C7E-450E-B747-D3C2BFD5327F.tif
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Projection-Mix_E07_s2_w2D7E0C2D6-CE27-4EC4-8E7B-90D3F351B9C3.tif
Projection-Mix_E07_s2_w2_thumbAF6A1BD4-E3F1-41C0-BEC3-6F5854574418.tif
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Projection-Mix_E08_s1_w2_thumb53722460-3C40-4C05-8C50-C9B1754F0C9A.tif
Projection-Mix_E08_s2_w1BB405418-05F7-4C37-A3E0-D676A75B9C99.tif
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Projection-Mix_E08_s2_w2_thumb00B0C7B1-2368-48D3-8099-029DAF6266B8.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_4:
Projection-Mix_E07_s1_w14B8A9CF3-EAC1-4C9C-8501-8A8546F24D95.tif
Projection-Mix_E07_s1_w1_thumb74E53A04-291D-4411-B5ED-4C93175A481D.tif
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Projection-Mix_E08_s2_w1_thumb4F2BFE6A-FD66-4D7B-9C3B-8B2E6CCBE343.tif
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Projection-Mix_E08_s2_w2_thumb1EBA923E-6254-41EA-95E2-1CB62FCE8877.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_5:
Projection-Mix_E07_s1_w121C731DC-B545-430A-B705-5BEF20B33B9A.tif
Projection-Mix_E07_s1_w1_thumb91FDCAF6-D19F-4BCB-93C3-DD3F5773EA52.tif
Projection-Mix_E07_s1_w25051A384-0655-423F-A6B3-DD29E05363A6.tif
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Projection-Mix_E07_s2_w2E143AECE-A510-421A-B352-50DCFA610C8D.tif
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Projection-Mix_E08_s2_w2_thumb38F82289-1147-4313-BC54-F4C639D37617.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_6:
Projection-Mix_E07_s1_w139F54C56-73A4-4902-991A-75EAEE836E5D.tif
Projection-Mix_E07_s1_w1_thumb80445BE8-1148-40FE-8FAB-53C88B1719D9.tif
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Projection-Mix_E07_s2_w1_thumb654BA85A-1E42-43C7-A7A8-FB91F905AC77.tif
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Projection-Mix_E07_s2_w2_thumb6723C20A-F1F1-4727-93E3-32B5E8345AF4.tif
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Projection-Mix_E08_s2_w1_thumb3CF427B1-310E-4F6B-A9F3-36943D883A06.tif
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./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_7:
Projection-Mix_E07_s1_w14887A96B-5EFF-4ABF-BBAC-38BDB13D81F5.tif
Projection-Mix_E07_s1_w1_thumb02EC411E-1FD3-48CE-B03E-69C07E855590.tif
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Projection-Mix_E07_s2_w1414CFA60-D960-4FDA-9FE2-4FFAA07AF558.tif
Projection-Mix_E07_s2_w1_thumb812DD40E-124F-41E6-8930-8ACCA548C498.tif
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Projection-Mix_E08_s1_w2_thumb477C7CD2-91FE-4AA8-BCF2-FC5908A04EF1.tif
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Projection-Mix_E08_s2_w1_thumbF0D7FDF7-2DA7-4D42-9988-86EE3E18CDF3.tif
Projection-Mix_E08_s2_w23A0E0CE2-939F-4734-BDB2-F670E5864C12.tif
Projection-Mix_E08_s2_w2_thumb26D80511-23C8-45A4-B821-D5271EAF766D.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_8:
Projection-Mix_E07_s1_w1D3071A65-DC30-4AB2-A0F6-98A7FEB25B7F.tif
Projection-Mix_E07_s1_w1_thumbE63556AD-7B4A-49B2-9D99-D668B3E93783.tif
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Projection-Mix_E08_s1_w2A6C7AD20-B557-454D-A051-85BAFEF2984E.tif
Projection-Mix_E08_s1_w2_thumb82BA16AE-6BFE-41DC-9B3D-68FC6E7EB6EB.tif
Projection-Mix_E08_s2_w1FC482D53-1211-48C7-9548-0DFBB8B7D49B.tif
Projection-Mix_E08_s2_w1_thumbB3730CA6-3951-43FA-AC26-198195656259.tif
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Projection-Mix_E08_s2_w2_thumb0077161C-E5C1-4A29-A5CC-1BDCB37A6922.tif

./resources/ImageXpress/Projection-Mix/2023-02-21/1334/ZStep_9:
Projection-Mix_E07_s1_w1091EB8A5-272A-466D-B8A0-7547C6BA392B.tif
Projection-Mix_E07_s1_w1_thumb29E5DC30-0DE3-4221-B237-C803607739C5.tif
Projection-Mix_E07_s1_w29B34CF69-877E-4617-A171-C7BD42ED5EE7.tif
Projection-Mix_E07_s1_w2_thumbD7CBDF2F-7527-4668-974D-C2F6E4AB5729.tif
Projection-Mix_E07_s2_w10961945B-7AF1-4182-85E2-DCE08A54F6E6.tif
Projection-Mix_E07_s2_w1_thumb68D4405D-D6E4-4F3B-B9F1-A13B950D7E43.tif
Projection-Mix_E07_s2_w2AA84543B-6063-4630-A293-AE288A98DF29.tif
Projection-Mix_E07_s2_w2_thumbCC93CB4E-54AD-4B4D-BC36-992ED92D19D0.tif
Projection-Mix_E08_s1_w1783C52E7-7E77-46BD-A12C-809F0BEEE549.tif
Projection-Mix_E08_s1_w1_thumb5333366A-F091-487E-99E6-3B5404BD29D7.tif
Projection-Mix_E08_s1_w2B8405A0A-E6F1-49F5-876D-6ECCE85CBFE0.tif
Projection-Mix_E08_s1_w2_thumbB90756F8-851E-462B-B527-96A98D542FA8.tif
Projection-Mix_E08_s2_w1E6876931-5F26-4F52-8CE6-94C2008473A8.tif
Projection-Mix_E08_s2_w1_thumb369DB21F-FDA0-47E6-9C6C-1E7A65AC0407.tif
Projection-Mix_E08_s2_w2980ECD4E-B03B-4051-A4BE-5EF45BDA5266.tif
Projection-Mix_E08_s2_w2_thumb210C0D5D-C20E-484D-AFB2-EFE669A56B84.tif

./resources/ImageXpress/SingleChannel:
2023-02-21

./resources/ImageXpress/SingleChannel/2023-02-21:
1334

./resources/ImageXpress/SingleChannel/2023-02-21/1334:
Projection-Mix_E07_s1E94C24BD-45E4-450A-9919-257C714278F7.tif
Projection-Mix_E07_s1_thumb4BFD4018-E675-475E-B5AB-2E959E6B6DA1.tif
Projection-Mix_E07_s2DCFD1526-D063-4F8B-9E51-F1BD2EBD9F1A.tif
Projection-Mix_E07_s2_thumbE4903920-91AA-405E-A39B-6EB284EA48E5.tif
Projection-Mix_E08_s117654C10-92F1-4DFD-98AA-6A01BBD77557.tif
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Projection-Mix_E08_s2B38C01F5-0D36-4A29-9F5A-BE62B6F7F73F.tif
Projection-Mix_E08_s2_thumbC7F53295-5DB8-4989-9E25-DD1068A2E266.tif
ZStep_1
ZStep_2

./resources/ImageXpress/SingleChannel/2023-02-21/1334/ZStep_1:
Projection-Mix_E07_s1E78EB128-BD0D-4D94-A6AD-3FF28BB1B105.tif
Projection-Mix_E07_s1_thumb187DE64B-038A-4671-BF6B-683721723769.tif
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Projection-Mix_E08_s2_thumb18DE71C8-9016-43DC-A15C-C3754C6E1685.tif

./resources/ImageXpress/SingleChannel/2023-02-21/1334/ZStep_2:
Projection-Mix_E07_s189A35A04-20E3-47AD-A1F9-8065B2840EFD.tif
Projection-Mix_E07_s1_thumb4D84758D-8ADA-45CE-A039-8A55AD05BFF9.tif
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Projection-Mix_E08_s14864BA30-C5B9-45C7-B9F2-44179190F8AC.tif
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Projection-Mix_E08_s2_thumbC56498A3-1C19-42B0-A06A-03FFF8E9B45E.tif

./src:
faim_ipa

./src/faim_ipa:
MetaSeriesUtils_dask.py  __init__.py    detection  mobie.py   visiview
UIntHistogram.py         alignment      hcs        stitching
Zarr.py                  dask_utils.py  io         utils.py

./src/faim_ipa/alignment:
__init__.py  alignment.py

./src/faim_ipa/detection:
__init__.py  blobs.py  spots.py  utils.py

./src/faim_ipa/hcs:
__init__.py  acquisition.py  cellvoyager  converter.py  imagexpress  plate.py

./src/faim_ipa/hcs/cellvoyager:
CellVoyagerWellAcquisition.py  StackedTile.py                __init__.py
StackAcquisition.py            ZAdjustedStackAcquisition.py

./src/faim_ipa/hcs/imagexpress:
ImageXpressPlateAcquisition.py  MixedAcquisition.py        StackAcquisition.py
ImageXpressWellAcquisition.py   SinglePlaneAcquisition.py  __init__.py

./src/faim_ipa/io:
ChannelMetadata.py  MetaSeriesTiff.py  __init__.py

./src/faim_ipa/stitching:
BoundingBox5D.py  DaskTileStitcher.py  Tile.py  __init__.py  stitching_utils.py

./src/faim_ipa/visiview:
RegionAcquisition.py  StackedTile.py  __init__.py  ome_companion_utils.py

./tests:
alignment  io                            test_UIntHistogram.py
detection  stitching                     test_dask_utils.py
hcs        test_MetaSeriesUtils_dask.py  test_utils.py

./tests/alignment:
test_alignment.py

./tests/detection:
test_blobs.py  test_detection_utils.py  test_spots.py

./tests/hcs:
cellvoyager  imagexpress  test_acquisition.py  test_converter.py  test_plate.py

./tests/hcs/cellvoyager:
files.csv                           test_StackAcquisition.py
test_CellVoyagerWellAcquisition.py  test_ZAdjustedStackAcquisition.py

./tests/hcs/imagexpress:
files.csv  test_ImageXpress.py  test_ImageXpressWellAcquisition.py

./tests/io:
test_ChannelMetadata.py  test_MetaSeriesTiff.py

./tests/stitching:
test_BoundingBox.py  test_TileStitcher.py
test_Tile.py         test_stitching_utils.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/fmi-faim__faim-ipa__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -la /workspace/HorlogeSkynet__archey4__0.0
total 140
drwxr-xr-x 8 root root  4096 Feb  5 19:08 .
drwxrwxr-x 3 root root  4096 Feb  5 18:57 ..
drwxr-xr-x 8 root root  4096 Feb  5 19:08 .git
-rw-rw-r-- 1 root root    66 Feb  5 19:08 .gitattributes
drwxr-xr-x 4 root root  4096 Feb  5 19:08 .github
-rw-rw-r-- 1 root root  2063 Feb  5 19:08 .gitignore
-rw-rw-r-- 1 root root 17994 Feb  5 19:08 CHANGELOG.md
-rw-rw-r-- 1 root root  1753 Feb  5 19:08 COPYRIGHT.md
-rw-rw-r-- 1 root root 35149 Feb  5 19:08 LICENSE
-rw-rw-r-- 1 root root 19840 Feb  5 19:08 README.md
-rw-rw-r-- 1 root root  2729 Feb  5 19:08 apparmor.profile
drwxr-xr-x 6 root root  4096 Feb  5 19:08 archey
-rw-rw-r-- 1 root root  2602 Feb  5 19:08 archey.1
drwxrwxr-x 2 root root  4096 Feb  5 19:08 archey4.egg-info
-rw-rw-r-- 1 root root  2095 Feb  5 19:08 config.json
drwxr-xr-x 2 root root  4096 Feb  5 19:08 dist
drwxr-xr-x 2 root root  4096 Feb  5 19:08 packaging
-rw-rw-r-- 1 root root  1242 Feb  5 19:08 pyproject.toml
-rw-rw-r-- 1 root root  2880 Feb  5 19:08 setup.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/HorlogeSkynet__archey4__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/TDAmeritrade__stumpy__0.0 && ls -R
.:
CHANGELOG.md        conda.sh         paper             setup.py
CITATION.bib        conftest.py      pip.sh            setup.sh
CODE_OF_CONDUCT.md  docs             postBuild         stumpy
CONTRIBUTING.md     doctest.sh       pypi.sh           stumpy.egg-info
LICENSE.txt         environment.yml  pytest.ini        test.sh
MANIFEST.in         notebooks        requirements.txt  tests
README.rst          numba.sh         setup.cfg

./docs:
Contribute.ipynb
FLOSS_IAC_Derivation.ipynb
Makefile
Matrix_Profile_Derivation.ipynb
Pearson.ipynb
Tutorial_AB_Joins.ipynb
Tutorial_Advanced_Annotation_Vectors.ipynb
Tutorial_Annotation_Vectors.ipynb
Tutorial_Consensus_Motif.ipynb
Tutorial_Fast_Approximate_Matrix_Profiles.ipynb
Tutorial_Geometric_Chains.ipynb
Tutorial_MPdist.ipynb
Tutorial_Matrix_Profiles_For_Streaming_Data.ipynb
Tutorial_Multidimensional_Motif_Discovery.ipynb
Tutorial_Pan_Matrix_Profile.ipynb
Tutorial_Pattern_Matching.ipynb
Tutorial_STUMPY_Basics.ipynb
Tutorial_Semantic_Segmentation.ipynb
Tutorial_Shapelet_Discovery.ipynb
Tutorial_The_Matrix_Profile.ipynb
Tutorial_Time_Series_Chains.ipynb
Tutorial_Time_Series_Snippets.ipynb
Tutorial_meter_swapping.ipynb
Welford_Review.ipynb
Zenodo.ipynb
_static
api.rst
conf.py
favicon.ico
help.rst
images
index.rst
install.rst
make.bat
motivation.rst
pull_request_template.md
requirements.txt
setup.sh
stumpy.mplstyle
tutorials.rst

./docs/_static:
css  logo.png

./docs/_static/css:
custom.css

./docs/images:
Performance.ipynb                performance.png        stumpy_symbol.png
Stumpy_Logo_Suite                performance.py         subsequence_a.jpeg
distance_matrix.gif              semantic.gif           subsequence_b.jpeg
distance_matrix.jpeg             stumpi.gif             subsequence_c.jpeg
euclidean_distance.jpeg          stumpy_large.gif       subsequences.jpeg
fetch_upstream_fork.png          stumpy_logo_large.png  time_series_viz.jpeg
matrix_profile.gif               stumpy_logo_small.png  trivial.jpeg
matrix_profile.jpeg              stumpy_medium.gif      trivial_match.jpeg
pairwise_euclidean_distance.gif  stumpy_small.gif

./docs/images/Stumpy_Logo_Suite:
CMYK  K  KO  PMS  RGB

./docs/images/Stumpy_Logo_Suite/CMYK:
Stumpy_logo_circle_CMYK.ai   Stumpy_logo_horz_CMYK.ai
Stumpy_logo_circle_CMYK.svg  Stumpy_logo_vert_CMYK.ai

./docs/images/Stumpy_Logo_Suite/K:
Stumpy_logo_horz_K.ai  Stumpy_logo_vert_K.ai

./docs/images/Stumpy_Logo_Suite/KO:
Stumpy_logo_horz_KO.ai  Stumpy_logo_vert_KO.ai

./docs/images/Stumpy_Logo_Suite/PMS:
Stumpy_logo_horz_PMS.ai  Stumpy_logo_vert_PMS.ai

./docs/images/Stumpy_Logo_Suite/RGB:
Stumpy_logo_horz_RGB.ai  Stumpy_logo_vert_RGB.ai

./notebooks:
README
Tutorial_AB_Joins.ipynb
Tutorial_Annotation_Vectors.ipynb
Tutorial_Consensus_Motif.ipynb
Tutorial_Fast_Approximate_Matrix_Profiles.ipynb
Tutorial_Matrix_Profiles_For_Streaming_Data.ipynb
Tutorial_Multidimensional_Motif_Discovery.ipynb
Tutorial_Pattern_Matching.ipynb
Tutorial_STUMPY_Basics.ipynb
Tutorial_Semantic_Segmentation.ipynb
Tutorial_Time_Series_Chains.ipynb
stumpy.mplstyle

./paper:
matrix_profile.jpeg  paper.bib  paper.md  stumpy_logo_small.png

./stumpy:
__init__.py           chains.py             gpu_stimp.py  scraamp.py
aamp.py               config.py             gpu_stump.py  scrump.py
aamp_mmotifs.py       core.py               maamp.py      snippets.py
aamp_motifs.py        floss.py              maamped.py    stamp.py
aamp_ostinato.py      gpu_aamp.py           mmotifs.py    stimp.py
aamp_stimp.py         gpu_aamp_ostinato.py  motifs.py     stomp.py
aampdist.py           gpu_aamp_stimp.py     mpdist.py     stump.py
aampdist_snippets.py  gpu_aampdist.py       mstump.py     stumped.py
aamped.py             gpu_mpdist.py         mstumped.py   stumpi.py
aampi.py              gpu_ostinato.py       ostinato.py

./stumpy.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./tests:
naive.py                   test_gpu_stimp.py
test_aamp.py               test_gpu_stump.py
test_aamp_mmotifs.py       test_maamp.py
test_aamp_motifs.py        test_maamped.py
test_aamp_ostinato.py      test_mmotifs.py
test_aamp_stimp.py         test_motifs.py
test_aampdist.py           test_mpdist.py
test_aampdist_snippets.py  test_mstump.py
test_aamped.py             test_mstumped.py
test_aampi.py              test_non_normalized_decorator.py
test_chains.py             test_ostinato.py
test_config.py             test_scraamp.py
test_core.py               test_scrump.py
test_floss.py              test_snippets.py
test_gpu_aamp.py           test_stamp.py
test_gpu_aamp_ostinato.py  test_stimp.py
test_gpu_aamp_stimp.py     test_stomp.py
test_gpu_aampdist.py       test_stump.py
test_gpu_mpdist.py         test_stumped.py
test_gpu_ostinato.py       test_stumpi.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/TDAmeritrade__stumpy__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -R /workspace/parmoo__parmoo__0.0
/workspace/parmoo__parmoo__0.0:
CHANGELOG.rst     MANIFEST.in   SUPPORT.rst  parmoo
CONTRIBUTING.rst  README.rst    docs         parmoo.egg-info
LICENSE           REQUIREMENTS  examples     setup.py

/workspace/parmoo__parmoo__0.0/docs:
Makefile          conf.py     how-to-write.rst  latex_index.rst  refs.rst
REQUIREMENTS.txt  dev-guide   img               make.bat         tutorials
about.rst         extras.rst  index.rst         modules
api.rst           faqs.rst    install.rst       quickstart.rst

/workspace/parmoo__parmoo__0.0/docs/dev-guide:
contributing.rst  modules.rst  release-notes.rst  release-proc.rst

/workspace/parmoo__parmoo__0.0/docs/img:
algorithm-flowchart.png  icon-ParMOO_space.png  moop-uml.svg
des-obj-space.png        logo-ParMOO.png        moop.uml
des-sim-obj-space.png    logo-ParMOO.svg        parmoo_movie.gif
icon-ParMOO.png          logo-ParMOO_white.png
icon-ParMOO.svg          moop-uml.png

/workspace/parmoo__parmoo__0.0/docs/modules:
acquisitions.rst  dtlz.rst       objectives.rst   structs.rst
class_api.rst     libe.rst       optimizers.rst   surrogates.rst
constraints.rst   libraries.rst  searches.rst     util.rst
dev_tools.rst     moop.rst       simulations.rst  viz.rst

/workspace/parmoo__parmoo__0.0/docs/tutorials:
basic-tutorials.rst  libe-tutorial.rst  local_method.rst

/workspace/parmoo__parmoo__0.0/examples:
Makefile           libe_basic_ex.out  named_var_ex.out      quickstart.out
advanced_ex.out    libe_basic_ex.py   named_var_ex.py       quickstart.py
advanced_ex.py     local_method.csv   precomputed_data.out  unnamed_var_ex.out
checkpointing.out  local_method.jpeg  precomputed_data.py   unnamed_var_ex.py
checkpointing.py   local_method.py    quickstart.jpeg

/workspace/parmoo__parmoo__0.0/parmoo:
__init__.py   extras      optimizers   structs.py  util.py
acquisitions  moop.py     searches     surrogates  version.py
constraints   objectives  simulations  tests       viz

/workspace/parmoo__parmoo__0.0/parmoo/acquisitions:
__init__.py  epsilon_constraint.py  weighted_sum.py

/workspace/parmoo__parmoo__0.0/parmoo/constraints:
__init__.py  const_func.py  const_lib.py

/workspace/parmoo__parmoo__0.0/parmoo/extras:
__init__.py  libe.py

/workspace/parmoo__parmoo__0.0/parmoo/objectives:
__init__.py  dtlz.py  obj_func.py  obj_lib.py

/workspace/parmoo__parmoo__0.0/parmoo/optimizers:
__init__.py  gps_search.py  lbfgsb.py  random_search.py

/workspace/parmoo__parmoo__0.0/parmoo/searches:
__init__.py  latin_hypercube.py

/workspace/parmoo__parmoo__0.0/parmoo/simulations:
__init__.py  dtlz.py  sim_func.py  simple.py

/workspace/parmoo__parmoo__0.0/parmoo/surrogates:
__init__.py  gaussian_proc.py

/workspace/parmoo__parmoo__0.0/parmoo/tests:
__init__.py  libe_tests  regression_tests  run-tests.sh  unit_tests

/workspace/parmoo__parmoo__0.0/parmoo/tests/libe_tests:
__init__.py  libe_funcs.py  test_libe_gen.py

/workspace/parmoo__parmoo__0.0/parmoo/tests/regression_tests:
__init__.py        test_dtlz2_sim.py  test_infeasible_prob.py
test_dtlz1_obj.py  test_dtlz3_obj.py  test_mixed_variables.py
test_dtlz1_sim.py  test_dtlz3_sim.py  test_user_func.py
test_dtlz2_obj.py  test_dtlz5_sim.py

/workspace/parmoo__parmoo__0.0/parmoo/tests/unit_tests:
__init__.py                 test_libe.py             test_random_search.py
test_const_lib.py           test_moop.py             test_sims_dtlz.py
test_epsilon_constraint.py  test_moop_embeddings.py  test_sims_simple.py
test_gaussian_proc.py       test_moop_ev.py          test_structs.py
test_gps_search.py          test_moop_grads.py       test_util.py
test_latin_hypercube.py     test_obj_dtlz.py         test_viz_without_dash.py
test_lbfgsb.py              test_obj_lib.py          test_weighted_sum.py

/workspace/parmoo__parmoo__0.0/parmoo/viz:
__init__.py  dashboard.py  graph.py  plot.py  utilities.py

/workspace/parmoo__parmoo__0.0/parmoo.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/parmoo__parmoo__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/graphql-python__graphene__0.0 && ls -R
.:
LICENSE      README.rst       bin       graphene           setup.cfg
MANIFEST.in  UPGRADE-v1.0.md  docs      graphene.egg-info  setup.py
README.md    UPGRADE-v2.0.md  examples  mypy.ini           tox.ini

./bin:
autolinter  convert_documentation

./docs:
Makefile  execution  quickstart.rst  requirements.txt  types
conf.py   index.rst  relay           testing

./docs/execution:
dataloader.rst  execute.rst  index.rst  middleware.rst

./docs/relay:
connection.rst  index.rst  mutations.rst  nodes.rst

./docs/testing:
index.rst

./docs/types:
abstracttypes.rst  interfaces.rst        objecttypes.rst  unions.rst
enums.rst          list-and-nonnull.rst  scalars.rst
index.rst          mutations.rst         schema.rst

./examples:
__init__.py         context_example.py  starwars
complex_example.py  simple_example.py   starwars_relay

./examples/starwars:
__init__.py  data.py  schema.py  tests

./examples/starwars/tests:
__init__.py  snapshots  test_query.py  test_schema.py

./examples/starwars/tests/snapshots:
__init__.py  snap_test_query.py

./examples/starwars_relay:
__init__.py  data.py  schema.py  tests

./examples/starwars_relay/tests:
__init__.py  test_connections.py  test_objectidentification.py
snapshots    test_mutation.py

./examples/starwars_relay/tests/snapshots:
__init__.py               snap_test_mutation.py
snap_test_connections.py  snap_test_objectidentification.py

./graphene:
__init__.py  pyutils  relay  test  tests  types  utils

./graphene/pyutils:
__init__.py  compat.py  init_subclass.py  tests
__pycache__  enum.py    signature.py      version.py

./graphene/pyutils/__pycache__:
__init__.cpython-39.pyc  version.cpython-39.pyc

./graphene/pyutils/tests:
__init__.py  test_enum.py

./graphene/relay:
__init__.py  connection.py  mutation.py  node.py  tests

./graphene/relay/tests:
__init__.py               test_global_id.py  test_node_custom.py
test_connection.py        test_mutation.py
test_connection_query.py  test_node.py

./graphene/test:
__init__.py

./graphene/tests:
__init__.py  issues

./graphene/tests/issues:
__init__.py  test_313.py  test_356.py  test_425.py  test_490.py

./graphene/types:
__init__.py      dynamic.py          json.py         structures.py
abstracttype.py  enum.py             mountedtype.py  tests
argument.py      field.py            mutation.py     typemap.py
base.py          generic.py          objecttype.py   union.py
context.py       inputfield.py       resolver.py     unmountedtype.py
datetime.py      inputobjecttype.py  scalars.py      utils.py
definitions.py   interface.py        schema.py       uuid.py

./graphene/types/tests:
__init__.py           test_generic.py          test_resolver.py
test_abstracttype.py  test_inputfield.py       test_scalar.py
test_argument.py      test_inputobjecttype.py  test_scalars_serialization.py
test_base.py          test_interface.py        test_schema.py
test_datetime.py      test_json.py             test_structures.py
test_definition.py    test_mountedtype.py      test_typemap.py
test_dynamic.py       test_mutation.py         test_union.py
test_enum.py          test_objecttype.py       test_uuid.py
test_field.py         test_query.py            utils.py

./graphene/utils:
__init__.py              module_loading.py     str_converters.py
annotate.py              orderedtype.py        subclass_with_meta.py
deprecated.py            props.py              tests
get_unbound_function.py  resolve_only_args.py  trim_docstring.py

./graphene/utils/tests:
__init__.py             test_resolve_only_args.py
test_annotate.py        test_resolver_from_annotations.py
test_deprecated.py      test_str_converters.py
test_module_loading.py  test_trim_docstring.py
test_orderedtype.py

./graphene.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/graphql-python__graphene__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/openscilab__reserver__0.0 && ls -R
.:
AUTHORS.md    SECURITY.md   dev-requirements.txt  reserver.egg-info
CHANGELOG.md  autopep8.bat  otherfiles            setup.py
LICENSE       autopep8.sh   requirements.txt      tests
README.md     codecov.yml   reserver

./otherfiles:
RELEASE.md    meta.yaml                 reserver.png
donation.png  requirements-splitter.py  version_check.py

./reserver:
__init__.py  reserver_func.py  reserver_obj.py  reserver_param.py

./reserver.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./tests:
test_reserver.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/openscilab__reserver__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/balbasty__cornucopia__0.0 && ls -R
.:
LICENSE      cornucopia           mkdocs.yml      setup.py
README.md    cornucopia.egg-info  pyproject.toml  versioneer.py
__pycache__  docs                 setup.cfg

./__pycache__:
versioneer.cpython-39.pyc

./cornucopia:
__init__.py  baseutils.py  fov.py        io.py      noise.py  random.py   tests
_version.py  contrast.py   geometric.py  kspace.py  psf.py    special.py  utils
base.py      ctx.py        intensity.py  labels.py  qmri.py   synth.py

./cornucopia/tests:
__init__.py            test_run_intensity.py  test_run_psf.py
test_run_contrast.py   test_run_kspace.py     test_run_qmri.py
test_run_fov.py        test_run_labels.py     test_run_synth.py
test_run_geometric.py  test_run_noise.py

./cornucopia/utils:
__init__.py  conv.py      io.py       morpho.py   py.py
b0.py        gmm.py       jit.py      padding.py  version.py
bounds.py    indexing.py  kernels.py  patch.py    warps.py

./cornucopia.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./docs:
api       icons     install.md   requirements.txt
examples  index.md  javascripts  start.md

./docs/api:
base.md      fov.md        io.md      noise.md     qmri.md     synth.md
contrast.md  geometric.md  kspace.md  overview.md  random.md
ctx.md       intensity.md  labels.md  psf.md       special.md

./docs/examples:
benchmark.ipynb  fov.ipynb     motion.ipynb  qmri.ipynb
coils.ipynb      geom.ipynb    noise.ipynb   synth.ipynb
contrast.ipynb   labels.ipynb  overview.md

./docs/icons:
cc.png              cc_lightorange.svg  cornucopia_lightorange.png
cc.svg              cc_white.png        cornucopia_lightorange.svg
cc_full_white.png   cc_white.svg        cornucopia_orange.png
cc_full_white.svg   cornucopia.png      cornucopia_orange.svg
cc_lightorange.png  cornucopia.svg

./docs/javascripts:
mathjax.js[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/balbasty__cornucopia__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/reframe-hpc__reframe__0.0 && ls -l
total 96
-rw-rw-r--  1 root root  428 Jan 18 22:40 CONTRIBUTING.md
-rw-rw-r--  1 root root 5538 Jan 18 22:40 Jenkinsfile
-rw-rw-r--  1 root root 1559 Jan 18 22:40 LICENSE
-rw-rw-r--  1 root root   26 Jan 18 22:40 MANIFEST.in
-rw-rw-r--  1 root root 5319 Jan 18 22:40 README.md
-rw-rw-r--  1 root root 3608 Jan 18 22:40 README_minimal.md
drwxrwxr-x  2 root root 4096 Jan 18 22:41 ReFrame_HPC.egg-info
drwxr-xr-x  2 root root 4096 Jan 18 22:40 bin
-rwxrwxr-x  1 root root 3196 Jan 18 22:40 bootstrap.sh
drwxr-xr-x  4 root root 4096 Jan 18 22:40 ci-scripts
drwxrwxr-x  2 root root 4096 Jan 18 22:40 config
drwxr-xr-x  5 root root 4096 Jan 18 22:40 docs
drwxr-xr-x  9 root root 4096 Jan 18 22:31 hpctestlib
-rw-rw-r--  1 root root   90 Jan 18 22:40 pyproject.toml
drwxr-xr-x  6 root root 4096 Jan 18 22:40 reframe
-rw-rw-r--  1 root root  763 Jan 18 22:40 requirements.txt
-rw-rw-r--  1 root root 1314 Jan 18 22:40 setup.cfg
drwxr-xr-x  3 root root 4096 Jan 18 22:31 share
-rwxrwxr-x  1 root root 2043 Jan 18 22:40 test_reframe.py
drwxr-xr-x  2 root root 4096 Jan 18 22:40 tools
drwxrwxr-x 10 root root 4096 Jan 18 22:40 tutorials
drwxr-xr-x  4 root root 4096 Jan 18 22:40 unittests[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/reframe-hpc__reframe__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/parmoo__parmoo__0.0 && find . -type f -name "*.py" | grep -v "test"
./docs/conf.py
./setup.py
./parmoo/simulations/__init__.py
./parmoo/simulations/dtlz.py
./parmoo/simulations/sim_func.py
./parmoo/viz/utilities.py
./parmoo/viz/graph.py
./parmoo/viz/__init__.py
./parmoo/viz/plot.py
./parmoo/viz/dashboard.py
./parmoo/extras/__init__.py
./parmoo/extras/libe.py
./parmoo/__init__.py
./parmoo/constraints/const_func.py
./parmoo/constraints/__init__.py
./parmoo/constraints/const_lib.py
./parmoo/acquisitions/epsilon_constraint.py
./parmoo/acquisitions/__init__.py
./parmoo/acquisitions/weighted_sum.py
./parmoo/optimizers/random_search.py
./parmoo/optimizers/__init__.py
./parmoo/optimizers/lbfgsb.py
./parmoo/optimizers/gps_search.py
./parmoo/version.py
./parmoo/objectives/__init__.py
./parmoo/objectives/obj_lib.py
./parmoo/objectives/dtlz.py
./parmoo/objectives/obj_func.py
./parmoo/surrogates/gaussian_proc.py
./parmoo/surrogates/__init__.py
./parmoo/structs.py
./parmoo/moop.py
./parmoo/searches/__init__.py
./parmoo/searches/latin_hypercube.py
./parmoo/util.py
./examples/libe_basic_ex.py
./examples/advanced_ex.py
./examples/precomputed_data.py
./examples/checkpointing.py
./examples/named_var_ex.py
./examples/unnamed_var_ex.py
./examples/quickstart.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/parmoo__parmoo__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/adtzlr__felupe__0.0 && ls -R
.:
LICENSE    docs    felupe.egg-info  setup.cfg  tox.ini
README.md  felupe  pyproject.toml   tests

./docs:
README.md      _sidebar.md  guide.md  index.html  quickstart.md
_coverpage.md  examples.md  images    mesh.md

./docs/images:
deformed_mesh.png  readme.png  threefield_cube.png
logo.svg           region.svg  undeformed_mesh.png

./felupe:
__about__.py  _assembly  constitution  element  mesh        region  tools
__init__.py   _field     dof           math     quadrature  solve

./felupe/_assembly:
__init__.py  _axi.py  _base.py  _mixed.py

./felupe/_field:
__init__.py  _axi.py  _base.py  _indices.py  _mixed.py

./felupe/constitution:
__init__.py  _kinematics.py  _mixed.py  _models.py

./felupe/dof:
__init__.py  _boundary.py  _loadcase.py  _multipoint.py  _tools.py

./felupe/element:
__init__.py  _hexahedron.py  _line.py  _tetra.py
_base.py     _lagrange.py    _quad.py  _triangle.py

./felupe/math:
__init__.py  _field.py  _tensor.py

./felupe/mesh:
__init__.py  _base.py  _geometry.py  _mesh.py  _tools.py

./felupe/quadrature:
__init__.py  _base.py  _gausslegendre.py  _tetra.py  _triangle.py

./felupe/region:
__init__.py  _region.py  _templates.py

./felupe/solve:
__init__.py  _solve.py

./felupe/tools:
__init__.py  _check.py  _newton.py  _post.py  _project.py  _save.py  _solve.py

./felupe.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./tests:
__init__.py           test_field.py  test_quadrature.py  test_tools.py
test_constitution.py  test_form.py   test_readme.py
test_dof.py           test_math.py   test_region.py
test_element.py       test_mesh.py   test_solve.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/adtzlr__felupe__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/adtzlr__felupe__0.0 && ls -R
.:
LICENSE    docs    felupe.egg-info  setup.cfg  tox.ini
README.md  felupe  pyproject.toml   tests

./docs:
Makefile  explanation      felupe.rst  images     requirements.txt
_static   explanation.rst  howto       index.rst  tutorial
conf.py   felupe           howto.rst   make.bat   tutorial.rst

./docs/_static:
animation.ogv  logo_dark.svg  logo_light.svg

./docs/explanation:
axi.rst  mixed.rst  polynomial.rst

./docs/felupe:
constitution  global  global.rst  mesh

./docs/felupe/constitution:
constitution.rst

./docs/felupe/global:
assembly.rst  constitution.rst  element.rst  mesh.rst        region.rst
basis.rst     dof.rst           field.rst    quadrature.rst  tools.rst

./docs/felupe/mesh:
mesh.rst

./docs/howto:
axi.rst        forms.rst  meshgen.rst  rbe2.rst
composite.rst  images     mixed.rst    solvers.rst

./docs/howto/images:
composite_rubber_cauchy.png  cube.png  threefield_cube.png
composite_total.png          quad.png

./docs/images:
readme.png

./docs/tutorial:
beam.rst            hellofelupe.rst  numcont.rst        shear.rst
gettingstarted.rst  images           platewithhole.rst

./docs/tutorial/images:
animation.ogv        platewithhole_mesh.png         shear.svg
beam.png             platewithhole_stress.png       shear_deformed.png
beam_bodyforce.png   platewithhole_stressplot.png   shear_mesh.png
deformed_mesh.png    platewithhole_stressplot2.png  shear_plot.svg
getting-started.svg  plot_force-displacement.png    undeformed_mesh.png
lab.png              readme.png
platehole.svg        region.svg

./felupe:
__about__.py  _assembly  _field        dof      math  quadrature  solve
__init__.py   _basis     constitution  element  mesh  region      tools

./felupe/_assembly:
__init__.py  _axi.py  _base.py  _form.py  _mixed.py

./felupe/_basis:
__init__.py  _basis.py

./felupe/_field:
__init__.py  _axi.py  _base.py  _indices.py  _mixed.py

./felupe/constitution:
__init__.py  _kinematics.py  _mixed.py  _models.py  _wrappers.py

./felupe/dof:
__init__.py  _boundary.py  _loadcase.py  _multipoint.py  _tools.py

./felupe/element:
__init__.py  _hexahedron.py  _line.py  _tetra.py
_base.py     _lagrange.py    _quad.py  _triangle.py

./felupe/math:
__init__.py  _field.py  _tensor.py

./felupe/mesh:
__init__.py  _base.py  _geometry.py  _mesh.py  _tools.py

./felupe/quadrature:
__init__.py  _base.py  _gausslegendre.py  _tetra.py  _triangle.py

./felupe/region:
__init__.py  _region.py  _templates.py

./felupe/solve:
__init__.py  _solve.py

./felupe/tools:
__init__.py  _check.py  _newton.py  _post.py  _project.py  _save.py  _solve.py

./felupe.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./tests:
__init__.py           test_dof.py      test_math.py        test_region.py
test_basis.py         test_element.py  test_mesh.py        test_solve.py
test_bilinearform.py  test_field.py    test_quadrature.py  test_tools.py
test_constitution.py  test_form.py     test_readme.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/adtzlr__felupe__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -la /workspace/LOVE-DOCTOR__MultiTrain__0.0
total 68
drwxr-xr-x 6 root root  4096 Feb  5 12:21 .
drwxrwxr-x 3 root root  4096 Feb  5 11:35 ..
drwxr-xr-x 5 root root  4096 Feb  5 12:21 .git
drwxr-xr-x 3 root root  4096 Feb  5 11:35 .github
-rw-rw-r-- 1 root root  2262 Feb  5 12:20 .gitignore
-rw-rw-r-- 1 root root   887 Feb  5 12:20 CHANGELOG.md
-rw-rw-r-- 1 root root  1070 Feb  5 12:20 LICENSE
drwxr-xr-x 6 root root  4096 Feb  5 12:20 MultiTrain
drwxrwxr-x 2 root root  4096 Feb  5 12:21 MultiTrain.egg-info
-rw-rw-r-- 1 root root 24481 Feb  5 12:20 README.md
-rw-rw-r-- 1 root root   239 Feb  5 12:20 requirements.txt
-rw-rw-r-- 1 root root  2272 Feb  5 12:20 setup.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/LOVE-DOCTOR__MultiTrain__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -l /workspace/CirQuS-UTS__QuanGuru__0.0
total 40
-rw-rw-r-- 1 root root 1658 Feb  5 13:58 LICENSE
-rw-rw-r-- 1 root root   81 Feb  5 13:58 MANIFEST.in
-rw-rw-r-- 1 root root 3894 Feb  5 13:58 README.md
drwxr-xr-x 3 root root 4096 Feb  5 13:58 docs
-rw-rw-r-- 1 root root  104 Feb  5 13:58 pyproject.toml
-rw-rw-r-- 1 root root  192 Feb  5 13:58 requirements-dev.txt
-rw-rw-r-- 1 root root   12 Feb  5 13:58 requirements.txt
-rw-rw-r-- 1 root root 1693 Feb  5 13:58 setup.cfg
drwxr-xr-x 4 root root 4096 Feb  5 13:58 src
drwxr-xr-x 4 root root 4096 Feb  5 13:58 tests[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/CirQuS-UTS__QuanGuru__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/adtzlr__felupe__0.0 && find . -name "*.py" -not -path "*/tests/*"
./docs/tutorial/examples/extut01_getting_started.py
./docs/tutorial/examples/extut03_building_blocks.py
./docs/tutorial/examples/extut02_job.py
./docs/conf.py
./src/felupe/field/_planestrain.py
./src/felupe/field/_base.py
./src/felupe/field/__init__.py
./src/felupe/field/_container.py
./src/felupe/field/_indices.py
./src/felupe/field/_fields.py
./src/felupe/field/_evaluate.py
./src/felupe/field/_dual.py
./src/felupe/field/_axi.py
./src/felupe/__init__.py
./src/felupe/math/_solve.py
./src/felupe/math/__init__.py
./src/felupe/math/_spatial.py
./src/felupe/math/_tensor.py
./src/felupe/math/_math.py
./src/felupe/math/_field.py
./src/felupe/mechanics/_curve.py
./src/felupe/mechanics/_item.py
./src/felupe/mechanics/__init__.py
./src/felupe/mechanics/_job.py
./src/felupe/mechanics/_solidbody_gravity.py
./src/felupe/mechanics/_pointload.py
./src/felupe/mechanics/_solidbody.py
./src/felupe/mechanics/_solidbody_pressure.py
./src/felupe/mechanics/_solidbody_incompressible.py
./src/felupe/mechanics/_step.py
./src/felupe/mechanics/_helpers.py
./src/felupe/mechanics/_multipoint.py
./src/felupe/assembly/_integral.py
./src/felupe/assembly/__init__.py
./src/felupe/assembly/expression/_basis.py
./src/felupe/assembly/expression/_expression.py
./src/felupe/assembly/expression/_mixed.py
./src/felupe/assembly/expression/__init__.py
./src/felupe/assembly/expression/_decorator.py
./src/felupe/assembly/expression/_linear.py
./src/felupe/assembly/expression/_bilinear.py
./src/felupe/assembly/_cartesian.py
./src/felupe/assembly/_axi.py
./src/felupe/constitution/_base.py
./src/felupe/constitution/_mixed.py
./src/felupe/constitution/linear_elasticity/_linear_elastic.py
./src/felupe/constitution/linear_elasticity/_linear_elastic_large_strain.py
./src/felupe/constitution/linear_elasticity/__init__.py
./src/felupe/constitution/linear_elasticity/_lame_converter.py
./src/felupe/constitution/small_strain/_material_strain.py
./src/felupe/constitution/small_strain/__init__.py
./src/felupe/constitution/small_strain/models/_linear_elastic.py
./src/felupe/constitution/small_strain/models/__init__.py
./src/felupe/constitution/small_strain/models/_linear_elastic_plastic_isotropic.py
./src/felupe/constitution/__init__.py
./src/felupe/constitution/hyperelasticity/core/__init__.py
./src/felupe/constitution/hyperelasticity/core/_ogden_roxburgh.py
./src/felupe/constitution/hyperelasticity/core/_neo_hooke_nearly_incompressible.py
./src/felupe/constitution/hyperelasticity/core/_neo_hooke_compressible.py
./src/felupe/constitution/hyperelasticity/core/_volumetric.py
./src/felupe/constitution/hyperelasticity/__init__.py
./src/felupe/constitution/hyperelasticity/models/_ogden.py
./src/felupe/constitution/hyperelasticity/models/_arruda_boyce.py
./src/felupe/constitution/hyperelasticity/models/microsphere/_framework_affine.py
./src/felupe/constitution/hyperelasticity/models/microsphere/__init__.py
./src/felupe/constitution/hyperelasticity/models/microsphere/_chain.py
./src/felupe/constitution/hyperelasticity/models/microsphere/_framework_nonaffine.py
./src/felupe/constitution/hyperelasticity/models/_mooney_rivlin.py
./src/felupe/constitution/hyperelasticity/models/__init__.py
./src/felupe/constitution/hyperelasticity/models/_yeoh.py
./src/felupe/constitution/hyperelasticity/models/_extended_tube.py
./src/felupe/constitution/hyperelasticity/models/_anssari_benam_bucchi.py
./src/felupe/constitution/hyperelasticity/models/_ogden_roxburgh.py
./src/felupe/constitution/hyperelasticity/models/_third_order_deformation.py
./src/felupe/constitution/hyperelasticity/models/_lopez_pamies.py
./src/felupe/constitution/hyperelasticity/models/_van_der_waals.py
./src/felupe/constitution/hyperelasticity/models/_miehe_goektepe_lulei.py
./src/felupe/constitution/hyperelasticity/models/_saint_venant_kirchhoff.py
./src/felupe/constitution/hyperelasticity/models/_morph_representative_directions.py
./src/felupe/constitution/hyperelasticity/models/_neo_hooke.py
./src/felupe/constitution/hyperelasticity/models/_alexander.py
./src/felupe/constitution/hyperelasticity/models/_helpers.py
./src/felupe/constitution/hyperelasticity/models/_finite_strain_viscoelastic.py
./src/felupe/constitution/hyperelasticity/_hyperelastic.py
./src/felupe/constitution/_kinematics.py
./src/felupe/constitution/lagrange/_total_lagrange.py
./src/felupe/constitution/lagrange/__init__.py
./src/felupe/constitution/lagrange/_material_ad.py
./src/felupe/constitution/lagrange/_updated_lagrange.py
./src/felupe/constitution/lagrange/models/microsphere/_framework_affine.py
./src/felupe/constitution/lagrange/models/microsphere/__init__.py
./src/felupe/constitution/lagrange/models/__init__.py
./src/felupe/constitution/lagrange/models/_morph.py
./src/felupe/constitution/lagrange/models/_morph_representative_directions.py
./src/felupe/constitution/lagrange/models/_morph_uniaxial.py
./src/felupe/constitution/_material.py
./src/felupe/constitution/_view.py
./src/felupe/quadrature/__init__.py
./src/felupe/quadrature/_tetra.py
./src/felupe/quadrature/_gausslegendre.py
./src/felupe/quadrature/_triangle.py
./src/felupe/quadrature/_sphere.py
./src/felupe/quadrature/_scheme.py
./src/felupe/mesh/__init__.py
./src/felupe/mesh/_container.py
./src/felupe/mesh/_read.py
./src/felupe/mesh/_convert.py
./src/felupe/mesh/_discrete_geometry.py
./src/felupe/mesh/_dual.py
./src/felupe/mesh/_mesh.py
./src/felupe/mesh/_geometry.py
./src/felupe/mesh/_line_rectangle_cube.py
./src/felupe/mesh/_helpers.py
./src/felupe/mesh/_tools.py
./src/felupe/__about__.py
./src/felupe/element/_base.py
./src/felupe/element/__init__.py
./src/felupe/element/_quad.py
./src/felupe/element/_tetra.py
./src/felupe/element/_hexahedron.py
./src/felupe/element/_line.py
./src/felupe/element/_lagrange.py
./src/felupe/element/_triangle.py
./src/felupe/dof/_boundary.py
./src/felupe/dof/_loadcase.py
./src/felupe/dof/__init__.py
./src/felupe/dof/_tools.py
./src/felupe/solve/_solve.py
./src/felupe/solve/__init__.py
./src/felupe/region/_templates.py
./src/felupe/region/_boundary.py
./src/felupe/region/__init__.py
./src/felupe/region/_region.py
./src/felupe/tools/_solve.py
./src/felupe/tools/__init__.py
./src/felupe/tools/_post.py
./src/felupe/tools/_project.py
./src/felupe/tools/_newton.py
./src/felupe/tools/_save.py
./src/felupe/tools/_plot.py
./src/felupe/tools/_misc.py
./examples/ex17_torsion-gif.py
./examples/ex02_plate-with-hole.py
./examples/ex14_hyperelasticity.py
./examples/ex12_foot-bone.py
./examples/ex18_nonlinear-viscoelasticity-newton.py
./examples/ex07_engine-mount.py
./examples/ex05_rubber-metal-bushing.py
./examples/ex16_deeplearning-torch.py
./examples/ex15_hexmesh-metacone.py
./examples/ex13_morph-rubber-wheel.py
./examples/ex01_beam.py
./examples/ex08_shear.py
./examples/ex10_poisson-equation.py
./examples/ex06_rubber-metal-spring.py
./examples/ex11_notch-stress.py
./examples/ex03_plasticity.py
./examples/ex04_balloon.py
./examples/ex09_numeric-continuation.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/adtzlr__felupe__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/sdv-dev__RDT__0.0 && find . -type f -name "*.py" | grep -v "test"
./setup.py
./tasks.py
./rdt/transformers/datetime.py
./rdt/transformers/numerical.py
./rdt/transformers/null.py
./rdt/transformers/__init__.py
./rdt/transformers/text.py
./rdt/transformers/addons/identity/__init__.py
./rdt/transformers/addons/identity/identity.py
./rdt/transformers/addons/addons_setup.py
./rdt/transformers/pii/__init__.py
./rdt/transformers/pii/utils.py
./rdt/transformers/pii/anonymizer.py
./rdt/transformers/base.py
./rdt/transformers/categorical.py
./rdt/transformers/boolean.py
./rdt/transformers/utils.py
./rdt/performance/datasets/datetime.py
./rdt/performance/datasets/numerical.py
./rdt/performance/datasets/__init__.py
./rdt/performance/datasets/text.py
./rdt/performance/datasets/base.py
./rdt/performance/datasets/categorical.py
./rdt/performance/datasets/boolean.py
./rdt/performance/datasets/utils.py
./rdt/performance/datasets/pii.py
./rdt/performance/__init__.py
./rdt/performance/profiling.py
./rdt/performance/performance.py
./rdt/__init__.py
./rdt/hyper_transformer.py
./rdt/errors.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/sdv-dev__RDT__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/DCC-Lab__RayTracing__0.0 && find . -type f -name "*.py" -not -path "*/tests/*"
./raytracing/imagingpath.py
./raytracing/components.py
./raytracing/ray.py
./raytracing/__init__.py
./raytracing/eo.py
./raytracing/specialtylenses.py
./raytracing/matrixgroup.py
./raytracing/axicon.py
./raytracing/gaussianbeam.py
./raytracing/laserpath.py
./raytracing/matrix.py
./raytracing/materials.py
./raytracing/olympus.py
./raytracing/__main__.py
./raytracing/rays.py
./raytracing/nikon.py
./raytracing/thorlabs.py
./examples/exemple.py
./examples/illuminator.py
./examples/testTracing.py
./examples/demo.py
./examples/invariant.py
./examples/multiProcessingTracing.py
./teaching/2019-devoir1.py
./teaching/2019-devoir1Sol.py
./teaching/2019-devoir1Check.py
./docs/conf.py
./setup.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/DCC-Lab__RayTracing__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
ls -l /workspace/RWTH-EBC__ebcpy__0.0
total 76
-rw-rw-r-- 1 root root  4148 Feb  5 16:52 CHANGELOG.md
-rw-rw-r-- 1 root root  1613 Feb  5 16:52 LICENSE
-rw-rw-r-- 1 root root  5514 Feb  5 16:52 README.md
drwxr-xr-x 3 root root  4096 Feb  5 16:52 docs
drwxr-xr-x 5 root root  4096 Feb  5 16:52 ebcpy
drwxrwxr-x 2 root root  4096 Feb  5 16:54 ebcpy.egg-info
drwxr-xr-x 3 root root  4096 Feb  5 16:52 examples
-rw-rw-r-- 1 root root 16565 Feb  5 16:52 pylintrc
-rw-rw-r-- 1 root root   286 Feb  5 16:52 requirements.txt
-rw-rw-r-- 1 root root    61 Feb  5 16:52 setup.cfg
-rw-rw-r-- 1 root root  2655 Feb  5 16:52 setup.py
drwxr-xr-x 3 root root  4096 Feb  5 16:52 tests
drwxr-xr-x 3 root root  4096 Feb  5 16:52 tutorial[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/RWTH-EBC__ebcpy__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/hunyadi__md2conf__0.0 && ls -l
total 64
-rw-rw-r-- 1 root root  214 Feb  4 23:48 Dockerfile
-rw-rw-r-- 1 root root 1077 Feb  4 23:48 LICENSE
-rw-rw-r-- 1 root root 7343 Feb  4 23:48 README.md
-rw-rw-r-- 1 root root  300 Feb  4 23:48 check.bat
-rwxrwxr-x 1 root root  163 Feb  4 23:48 check.sh
drwxrwxr-x 2 root root 4096 Feb  4 23:49 markdown_to_confluence.egg-info
drwxr-xr-x 2 root root 4096 Feb  4 23:48 md2conf
-rw-rw-r-- 1 root root  239 Feb  4 23:48 mypy.ini
-rwxrwxr-x 1 root root  571 Feb  4 23:48 package.sh
-rw-rw-r-- 1 root root   94 Feb  4 23:48 pyproject.toml
-rw-rw-r-- 1 root root  145 Feb  4 23:48 requirements.txt
drwxr-xr-x 3 root root 4096 Feb  4 23:48 sample
-rw-rw-r-- 1 root root 1361 Feb  4 23:48 setup.cfg
-rw-rw-r-- 1 root root   69 Feb  4 23:48 setup.py
drwxr-xr-x 4 root root 4096 Feb  4 23:48 tests[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/hunyadi__md2conf__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/nipy__nipype__0.0 && find . -name "dti.py"
./nipype/interfaces/diffusion_toolkit/dti.py
./nipype/interfaces/fsl/dti.py
./nipype/interfaces/camino/dti.py
./nipype/workflows/dmri/fsl/dti.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/nipy__nipype__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/m3dev__gokart__0.0 && ls -R
.:
LICENSE    docs      gokart           setup.py  yapf.ini
README.md  examples  gokart.egg-info  test

./docs:
Makefile    index.rst               task_information.rst
conf.py     make.bat                task_on_kart.rst
gokart.rst  slack_notification.rst  task_settings.rst

./examples:
sample_dynamic_requires.py  sample_main.py               sample_task.py
sample_fix_random_seed.py   sample_pandas_type_check.py  sample_task_log.py

./gokart:
__init__.py            parameter.py      task.py
file_processor.py      redis_lock.py     testing
gcs_config.py          run.py            workspace_management.py
gcs_zip_client.py      s3_config.py      zip_client.py
info.py                s3_zip_client.py  zip_client_util.py
object_storage.py      slack
pandas_type_config.py  target.py

./gokart/slack:
__init__.py  event_aggregator.py  slack_api.py  slack_config.py

./gokart/testing:
__init__.py  check_if_run_with_empty_data_frame.py

./gokart.egg-info:
PKG-INFO  SOURCES.txt  dependency_links.txt  requires.txt  top_level.txt

./test:
__init__.py                           test_pandas_type_config.py
config                                test_redis_lock.py
slack                                 test_restore_task_by_id.py
test_explicit_bool_parameter.py       test_run.py
test_gcs_config.py                    test_s3_zip_client.py
test_info.py                          test_target.py
test_large_data_fram_processor.py     test_task_instance_parameter.py
test_list_task_instance_parameter.py  test_task_on_kart.py
test_pandas_type_check_framework.py   testing

./test/config:
test_config.ini

./test/slack:
__init__.py  test_slack_api.py

./test/testing:
__init__.py  test_run_with_empty_data_frame.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/m3dev__gokart__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/FreeOpcUa__opcua-asyncio__0.0 && ls -R
.:
CHANGELOG.md          examples          schemas
COPYING               make_deb.sh       setup.cfg
Dockerfile            nodeset           setup.py
README.md             pytest.ini        stdeb.cfg
asyncua               release.py        test_external_server.py
asyncua.egg-info      requirements.txt  tests
dev_requirements.txt  ruff.toml         tools
docs                  run-tests.sh

./asyncua:
__init__.py                  client  crypto    server   tools.py
binary_address_space.pickle  common  py.typed  sync.py  ua

./asyncua/client:
__init__.py  client.py  ha  ua_client.py  ua_file.py  ua_file_transfer.py

./asyncua/client/ha:
__init__.py  common.py  ha_client.py  reconciliator.py  virtual_subscription.py

./asyncua/common:
__init__.py          methods.py            structures104.py
callback.py          node.py               subscription.py
connection.py        node_factory.py       type_dictionary_builder.py
copy_node_util.py    session_interface.py  ua_utils.py
event_objects.py     shortcuts.py          utils.py
events.py            sql_injection.py      xmlexporter.py
instantiate_util.py  statemachine.py       xmlimporter.py
manage_nodes.py      structures.py         xmlparser.py

./asyncua/crypto:
__init__.py  permission_rules.py   truststore.py  validator.py
cert_gen.py  security_policies.py  uacrypto.py

./asyncua/server:
__init__.py               internal_server.py         subscription_service.py
address_space.py          internal_session.py        uaprocessor.py
binary_server_asyncio.py  internal_subscription.py   user_managers.py
event_generator.py        monitored_item_service.py  users.py
history.py                server.py
history_sql.py            standard_address_space

./asyncua/server/standard_address_space:
__init__.py  standard_address_space.py  standard_address_space_services.py

./asyncua/ua:
__init__.py       relative_path.py  uaerrors            uatypes.py
attribute_ids.py  status_codes.py   uaprotocol_auto.py
object_ids.py     ua_binary.py      uaprotocol_hand.py

./asyncua/ua/uaerrors:
__init__.py  _auto.py  _base.py

./asyncua.egg-info:
PKG-INFO     dependency_links.txt  requires.txt
SOURCES.txt  entry_points.txt      top_level.txt

./docs:
Makefile  api  conf.py  index.rst  make.bat  requirements.txt  usage

./docs/api:
asyncua.client.ha.rst  asyncua.server.rst
asyncua.client.rst     asyncua.server.standard_address_space.rst
asyncua.common.rst     asyncua.ua.rst
asyncua.crypto.rst     asyncua.ua.uaerrors.rst
asyncua.rst            index.rst

./docs/usage:
client  common  get-started  index.rst  server  sync

./docs/usage/client:
overview.rst

./docs/usage/common:
node-nodeid.rst  overview.rst

./docs/usage/get-started:
installation.rst  minimal-client.rst  minimal-server.rst  opc-ua-basics.rst

./docs/usage/server:
overview.rst

./docs/usage/sync:
overview.rst

./examples:
certificate-3072-example.der
certificate-example.der
certificates
client-custom-structures-and-enums.py
client-events.py
client-example.py
client-file.py
client-limits.py
client-minimal-auth.py
client-minimal.py
client-reconnect.py
client-subscription.py
client-with-encryption.py
client_deleting.py
client_play_with_type_definition.py
client_read-custom_structures.py
client_to_demo-this.com.py
client_to_kepware.py
client_to_prosys.py
client_to_prosys_cert.py
client_to_prosys_crypto.py
client_to_uanet_alarm_conditions.py
client_ua_file_transfer.py
custom_nodes.xml
customobject.xml
finitestatemachine-example.py
generate_certificate.sh
generate_certificates.py
ha_client-example.py
perf-client.py
private-key-3072-example.pem
private-key-example.pem
server-callback.py
server-custom-object.py
server-custom-structures-and-enums.py
server-custom-structures-before-1.04.py
server-datavalue-history.py
server-enums-before-1.04.py
server-events-history.py
server-events.py
server-example.py
server-extension-object-as-method-argument.py
server-instantiate-object.py
server-limits.py
server-methods.py
server-minimal.py
server-robotics.py
server-ua-python-mirror.py
server-virtual-network.py
server-with-encryption.py
server-woodworking.py
server-xmlexporter.py
simple-client-server-xml
statemachine-example.py
sync
test_perf.py

./examples/certificates:
peer-certificate-example-1.der
peer-certificate-example-2.der
peer-certificate-example-3.der
peer-certificate-example-encrypted-private-key.der
peer-private-key-example-1.pem
peer-private-key-example-2.pem
peer-private-key-example-3.pem
peer-private-key-example-encrypted-private-key.pem

./examples/simple-client-server-xml:
client_minimal.py  server.py  test_saying.xml

./examples/sync:
client-example.py  client_to_prosys.py  server-example.py
client-minimal.py  custom_nodes.xml     server-minimal.py

./nodeset:

./schemas:
README.md                  generate_model_from_nodeset.py
StatusCodes_add.csv        generate_protocol_python.py
generate_address_space.py  generate_statuscode.py
generate_event_objects.py  generate_uaerrors.py
generate_ids.py            uaprotocol_auto_add.py
generate_model_event.py    update_ua_nodeset.py

./tests:
__init__.py                                test_ha_client.py
conftest.py                                test_history.py
custom_enum.xml                            test_history_events.py
custom_extension_with_optional_fields.xml  test_history_limits.py
custom_nodes.xml                           test_opclab_internet.sh
custom_nodesns.xml                         test_password.py
custom_nodesns_2.xml                       test_permissions.py
custom_nodesns_3.xml                       test_relative_path.py
custom_nodesns_4.xml                       test_requirement_fail.xml
custom_ns_meta_add.xml                     test_requirement_pass.xml
custom_struct.xml                          test_server.py
custom_struct_recursive.xml                test_standard_address_space.py
enum_struct_test_nodes.xml                 test_subscriptions.py
example.bsd                                test_sync.py
substructs.xml                             test_tools.py
test_callback_service.py                   test_truststore.py
test_client.py                             test_uaerrors.py
test_common.py                             test_uautils.py
test_connections.py                        test_unit.py
test_crypto_connect.py                     test_xml.py
test_custom_structures.py                  testenum104.xml
test_gen_certificates.py                   util_enum_struct.py

./tools:
uacall    uadiscover     uals    uaserver     uawrite
uaclient  uahistoryread  uaread  uasubscribe[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/FreeOpcUa__opcua-asyncio__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/pints-team__pints__0.0 && find . -type f -name "*.py" -not -path "*/tests/*"
./docs/source/conf.py
./setup.py
./run-tests.py
./pints/_evaluation.py
./pints/interfaces/__init__.py
./pints/interfaces/stan/_stan.py
./pints/interfaces/stan/__init__.py
./pints/_core.py
./pints/_log_priors.py
./pints/residuals_diagnostics.py
./pints/_nested/_rejection.py
./pints/_nested/__init__.py
./pints/_nested/_ellipsoid.py
./pints/__init__.py
./pints/_mcmc/_rao_blackwell_ac.py
./pints/_mcmc/_summary.py
./pints/_mcmc/_haario_ac.py
./pints/_mcmc/_slice_stepout.py
./pints/_mcmc/_dream.py
./pints/_mcmc/__init__.py
./pints/_mcmc/_emcee_hammer.py
./pints/_mcmc/_slice_rank_shrinking.py
./pints/_mcmc/_population.py
./pints/_mcmc/_haario_bardenet_ac.py
./pints/_mcmc/_nuts.py
./pints/_mcmc/_adaptive_covariance.py
./pints/_mcmc/_mala.py
./pints/_mcmc/_relativistic.py
./pints/_mcmc/_slice_doubling.py
./pints/_mcmc/_dual_averaging.py
./pints/_mcmc/_metropolis.py
./pints/_mcmc/_hamiltonian.py
./pints/_mcmc/_differential_evolution.py
./pints/_mcmc/_monomial_gamma_hamiltonian.py
./pints/_mcmc/_dram_ac.py
./pints/io.py
./pints/_log_likelihoods.py
./pints/_log_pdfs.py
./pints/_boundaries.py
./pints/toy/_neals_funnel.py
./pints/toy/_goodwin_oscillator_model.py
./pints/toy/_cone.py
./pints/toy/_fitzhugh_nagumo_model.py
./pints/toy/_rosenbrock.py
./pints/toy/__init__.py
./pints/toy/_constant_model.py
./pints/toy/_parabola.py
./pints/toy/_german_credit.py
./pints/toy/_stochastic_degradation_model.py
./pints/toy/_sir_model.py
./pints/toy/_simple_egg_box.py
./pints/toy/_sho_model.py
./pints/toy/_repressilator_model.py
./pints/toy/_high_dimensional_gaussian.py
./pints/toy/_toy_classes.py
./pints/toy/_logistic_model.py
./pints/toy/_annulus.py
./pints/toy/_german_credit_hierarchical.py
./pints/toy/_multimodal_gaussian.py
./pints/toy/_hh_ik_model.py
./pints/toy/_stochastic_logistic_model.py
./pints/toy/_beeler_reuter_model.py
./pints/toy/_gaussian.py
./pints/toy/_hes1_michaelis_menten.py
./pints/toy/_eight_schools.py
./pints/toy/_twisted_gaussian_banana.py
./pints/toy/_lotka_volterra_model.py
./pints/_error_measures.py
./pints/_optimisers/_cmaes_bare.py
./pints/_optimisers/_cmaes.py
./pints/_optimisers/_xnes.py
./pints/_optimisers/__init__.py
./pints/_optimisers/_nelder_mead.py
./pints/_optimisers/_snes.py
./pints/_optimisers/_gradient_descent.py
./pints/_optimisers/_pso.py
./pints/noise.py
./pints/_diagnostics.py
./pints/plot/_trace.py
./pints/plot/_function_between_points.py
./pints/plot/__init__.py
./pints/plot/_histogram.py
./pints/plot/_surface.py
./pints/plot/_autocorrelation.py
./pints/plot/_series.py
./pints/plot/_function.py
./pints/plot/_pairwise.py
./pints/_transformation.py
./pints/_util.py
./pints/_logger.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/pints-team__pints__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/mmngreco__IneqPy__0.0 && ls -l
total 152
-rw-rw-r-- 1 root root  1864 Jan 18 14:43 Dockerfile
drwxrwxr-x 2 root root  4096 Jan 18 14:43 IneqPy.egg-info
-rw-rw-r-- 1 root root   147 Jan 18 14:43 MANIFEST.in
-rw-rw-r-- 1 root root  6190 Jan 18 14:43 README.md
drwxrwxr-x 2 root root  4096 Jan 18 14:43 __pycache__
-rw-rw-r-- 1 root root   356 Jan 18 14:43 docker_local.sh
drwxr-xr-x 9 root root  4096 Jan 18 14:43 docs
-rw-rw-r-- 1 root root  1520 Jan 18 14:43 environment36.yml
-rw-rw-r-- 1 root root  1515 Jan 18 14:43 environment37.yml
drwxr-xr-x 2 root root  4096 Jan 18 14:43 examples
drwxrwxr-x 3 root root  4096 Jan 18 14:43 ineqpy
drwxrwxr-x 3 root root  4096 Jan 18 14:43 issues
-rw-rw-r-- 1 root root  1069 Jan 18 14:43 license.txt
-rw-rw-r-- 1 root root     0 Jan 18 14:43 requirements-base.txt
-rw-rw-r-- 1 root root   682 Jan 18 14:43 requirements-dev.txt
-rw-rw-r-- 1 root root   463 Jan 18 14:43 requirements.txt
-rw-rw-r-- 1 root root    50 Jan 18 14:43 run_test.sh
-rw-rw-r-- 1 root root   180 Jan 18 14:43 setup.cfg
-rw-rw-r-- 1 root root  1090 Jan 18 14:43 setup.py
drwxr-xr-x 3 root root  4096 Jan 18 14:43 tests
-rw-rw-r-- 1 root root   249 Jan 18 14:43 tox.ini
-rw-rw-r-- 1 root root 68611 Jan 18 14:43 versioneer.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/mmngreco__IneqPy__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/hunyadi__md2conf__0.0 && ls -R
.:
Dockerfile  check.sh                         package.sh        setup.cfg
LICENSE     markdown_to_confluence.egg-info  pyproject.toml    setup.py
README.md   md2conf                          requirements.txt  tests
check.bat   mypy.ini                         sample

./markdown_to_confluence.egg-info:
PKG-INFO     dependency_links.txt  requires.txt   zip-safe
SOURCES.txt  entry_points.txt      top_level.txt

./md2conf:
__init__.py  api.py          converter.py  processor.py   py.typed
__main__.py  application.py  entities.dtd  properties.py

./sample:
code.md  example.md  expected  figure  sibling.md

./sample/expected:
example.xml

./sample/figure:
interoperability.png  interoperability.svg

./tests:
test_api.py  test_conversion.py  test_processor.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/hunyadi__md2conf__0.0 #
[Command finished with exit code 0]


Prompt:
EXECUTION RESULT of [execute_bash]:
cd /workspace/SCECcode__pycsep__0.0 && find . -type f -name "*.py"
./docs/conf.py
./setup.py
./examples/tutorials/plot_customizations.py
./examples/tutorials/catalog_forecast_evaluation.py
./examples/tutorials/gridded_forecast_evaluation.py
./examples/tutorials/catalog_filtering.py
./examples/tutorials/working_with_catalog_forecasts.py
./examples/tutorials/plot_gridded_forecast.py
./tests/test_spatial.py
./tests/test_ingv_readers.py
./tests/__init__.py
./tests/test_adaptiveHistogram.py
./tests/test_regions.py
./tests/test_csep1_evaluations.py
./tests/test_time_utilities.py
./tests/test_JmaCsvCatalog.py
./tests/test_file_system.py
./tests/test_calc.py
./tests/test_math.py
./tests/test_catalog.py
./tests/test_create_catalog.py
./tests/test_basic_types_utils.py
./tests/test_evaluations.py
./tests/test_plots.py
./tests/test_comcat.py
./tests/test_stats.py
./bin/query_comcat_catalog.py
./csep/core/exceptions.py
./csep/core/__init__.py
./csep/core/catalogs.py
./csep/core/regions.py
./csep/core/repositories.py
./csep/core/catalog_evaluations.py
./csep/core/forecasts.py
./csep/core/poisson_evaluations.py
./csep/__init__.py
./csep/utils/basic_types.py
./csep/utils/datasets.py
./csep/utils/comcat.py
./csep/utils/__init__.py
./csep/utils/log.py
./csep/utils/scaling_relationships.py
./csep/utils/constants.py
./csep/utils/documents.py
./csep/utils/plots.py
./csep/utils/calc.py
./csep/utils/readers.py
./csep/utils/time_utils.py
./csep/utils/stats.py
./csep/utils/file.py
./csep/models.py[Python Interpreter: /usr/bin/python]
root@openhands-workspace:/workspace/SCECcode__pycsep__0.0 #
[Command finished with exit code 0]