function exec_evaluation_contrast_speckle(path_scan,path_phantom,path_img,flag_simu,flag_display,path_output) %-- Function used for the evaluation of contrast and speckle quality in ultrasound imaging %-- Authors: Olivier Bernard (olivier.bernard@creatis.insa-lyon.fr) %-- Alfonso Rodriguez-Molares (alfonso.r.molares@ntnu.no) %-- $Date: 2016/03/01 $ %-- Parameters category = [1 11 75]; %-- Convert input argument received as string flag_simu = uint8(str2num(flag_simu)); %-- convert string back to int flag_display = uint8(str2num(flag_display)); %-- convert string back to int %-- Read input data scan = linear_scan(); scan.read_file(path_scan); pht = us_phantom(); pht.read_file(path_phantom); image = us_image(); image.read_file(path_img); %-- Perform testing for contrast testing_contrast = us_contrast(); testing_contrast.pht = pht; testing_contrast.scan = scan; testing_contrast.image = image; testing_contrast.flagDisplay = flag_display; testing_contrast.evaluate(); %-- Perform testing for speckle quality testing_speckle = us_speckle_quality(); testing_speckle.pht = pht; testing_speckle.scan = scan; testing_speckle.image = image; testing_speckle.flagDisplay = flag_display; testing_speckle.evaluate(); %-- Check categories pw_list = testing_contrast.getNumberPlaneWavesList(); indexCategory = [0 0 0]; selected_pw = []; %-- Extract which category among the 3 main ones its = 0; for c=1:length(category) idx = find(pw_list==category(c)); if (~isempty(idx)) indexCategory(c) = idx; its = its+1; selected_pw(its) = category(c); end end %-- Extract bonus category pw_bonus = setdiff(pw_list,selected_pw); if ( (length(pw_bonus)>1) || isempty(pw_bonus) ) pw_bonus = 0; end %-- Get output result and store it in a file fid = fopen(path_output,'w'); %-- Store main category results for c=1:length(category) %-- Write result fprintf(fid,'#C%d \n\n',category(c)); if ( indexCategory(c)~=0 ) idx = indexCategory(c); score_contrast = squeeze(testing_contrast.score(idx,:,:)); writeScoreContrast(fid,score_contrast,flag_simu); score_speckle = squeeze(testing_speckle.score(idx,:)); writeScoreSpeckle(fid,score_speckle); end fprintf(fid,'\n#END\n\n'); end %-- Store bonus category results if (pw_bonus == 0) fprintf(fid,'#BONUS-NONE \n\n'); else fprintf(fid,'#BONUS-C%d \n\n',pw_bonus); idx = find(pw_list==pw_bonus); score = squeeze(testing_contrast.score(idx(1),:,:)); writeScoreContrast(fid,score,flag_simu); score_speckle = squeeze(testing_speckle.score(idx(1),:)); writeScoreSpeckle(fid,score_speckle); end fprintf(fid,'\n#END\n\n'); fclose(fid); end %---------------------------------------------------------------- %---------------------------------------------------------------- %---------------------------------------------------------------- %-- Auxillary functions %-- Write contrast results function writeScoreContrast(fid,score,flag_simu) if (flag_simu==1) writeSimulationScoreContrast(fid,score); else writeExperimentScoreContrast(fid,score); end end %-- Write contrast results corresponding to numerical phantom function writeSimulationScoreContrast(fid,score) %-- Mean axial and lateral values fprintf(fid,'Mean contrast scores (dB): %.2f \n\n',mean(score)); % fprintf(fid,'Mean contrast scores (dB) \n'); % fprintf(fid,'%.2f \n\n',mean(score)); %-- Left column fprintf(fid,'Left column targets \n'); for k=4:6 fprintf(fid,'%.2f\n',score(k)); end fprintf(fid,'\n'); %-- Middle column fprintf(fid,'Middle column targets \n'); for k=1:3 fprintf(fid,'%.2f\n',score(k)); end fprintf(fid,'\n'); %-- Right column fprintf(fid,'Right column targets \n'); for k=7:9 fprintf(fid,'%.2f\n',score(k)); end fprintf(fid,'\n'); end %-- Write contrast results corresponding to ex-vivo phantom function writeExperimentScoreContrast(fid,score) %-- Mean axial and lateral values fprintf(fid,'Mean contrast scores (dB): %.2f \n\n',mean(score)); % fprintf(fid,'Mean contrast scores (dB) \n'); % fprintf(fid,'%.2f\n\n',mean(score)); %-- Middle column fprintf(fid,'Middle column targets \n'); for k=1:2 fprintf(fid,'%.2f\n',score(k)); end fprintf(fid,'\n'); end %-- Write speckle results function writeScoreSpeckle(fid,score) %-- Speckle score display (0: test failed || 1: test passed) fprintf(fid,'PENALITY: '); if ~isempty(find(score==0,1)) fprintf(fid,'-40\n'); else fprintf(fid,'0\n'); end fprintf(fid,'Speckle quality (from Kolmogorov-Smirnov test) \n'); end