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Browse files- FairFedMed-Chest/ReadMe.docx +0 -0
- FairFedMed-Chest/data_description.txt +9 -0
- FairFedMed-Chest/meta_chexpert_age.csv +0 -0
- FairFedMed-Chest/meta_chexpert_age_test.csv +0 -0
- FairFedMed-Chest/meta_chexpert_age_train.csv +0 -0
- FairFedMed-Chest/meta_chexpert_gender.csv +0 -0
- FairFedMed-Chest/meta_chexpert_gender_test.csv +0 -0
- FairFedMed-Chest/meta_chexpert_gender_train.csv +0 -0
- FairFedMed-Chest/meta_chexpert_race.csv +0 -0
- FairFedMed-Chest/meta_chexpert_race_test.csv +0 -0
- FairFedMed-Chest/meta_chexpert_race_train.csv +0 -0
- FairFedMed-Chest/meta_mimic_age.csv +0 -0
- FairFedMed-Chest/meta_mimic_age_test.csv +0 -0
- FairFedMed-Chest/meta_mimic_age_train.csv +0 -0
- FairFedMed-Chest/meta_mimic_gender.csv +0 -0
- FairFedMed-Chest/meta_mimic_gender_test.csv +0 -0
- FairFedMed-Chest/meta_mimic_gender_train.csv +0 -0
- FairFedMed-Chest/meta_mimic_race.csv +0 -0
- FairFedMed-Chest/meta_mimic_race_test.csv +0 -0
- FairFedMed-Chest/meta_mimic_race_train.csv +0 -0
- FairFedMed-Chest/read_data.ipynb +79 -0
- FairFedMed-Oph/Dataset/dataset.zip +3 -0
- FairFedMed-Oph/ReadMe/data_description.txt +9 -0
- FairFedMed-Oph/ReadMe/data_summary.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site1_ethnicity.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site1_language.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site1_race.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site2_ethnicity.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site2_language.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site2_race.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site3_ethnicity.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site3_language.csv +0 -0
- FairFedMed-Oph/ReadMe/data_summary_site3_race.csv +0 -0
FairFedMed-Chest/ReadMe.docx
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FairFedMed-Chest/data_description.txt
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Please refer to the following link for the description of the data and the code that accompanies the data.
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https://github.com/Harvard-Ophthalmology-AI-Lab/FairFedMed
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The paper in which the dataset was first used and released:
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Li, M., Wen, C., Tian, Y., Shi, M., Luo, Y., Huang, H., Fang, Y. and Wang, M., 2025. FairFedMed: Benchmarking Group Fairness in Federated Medical Imaging with FairLoRA. IEEE Transactions on Medical Imaging.
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https://ieeexplore.ieee.org/abstract/document/11205878/
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FairFedMed-Chest/meta_chexpert_age.csv
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FairFedMed-Chest/meta_chexpert_age_test.csv
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FairFedMed-Chest/meta_chexpert_age_train.csv
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FairFedMed-Chest/meta_chexpert_gender.csv
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FairFedMed-Chest/meta_chexpert_gender_test.csv
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FairFedMed-Chest/meta_chexpert_gender_train.csv
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FairFedMed-Chest/meta_chexpert_race.csv
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FairFedMed-Chest/meta_chexpert_race_test.csv
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FairFedMed-Chest/meta_chexpert_race_train.csv
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FairFedMed-Chest/meta_mimic_age.csv
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FairFedMed-Chest/meta_mimic_age_test.csv
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FairFedMed-Chest/meta_mimic_age_train.csv
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FairFedMed-Chest/meta_mimic_gender.csv
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FairFedMed-Chest/meta_mimic_gender_test.csv
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FairFedMed-Chest/meta_mimic_gender_train.csv
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FairFedMed-Chest/meta_mimic_race.csv
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FairFedMed-Chest/meta_mimic_race_test.csv
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FairFedMed-Chest/meta_mimic_race_train.csv
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FairFedMed-Chest/read_data.ipynb
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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": 1,
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"Updated: meta_mimic_race.csv\n",
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"Updated: meta_mimic_gender_test.csv\n",
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"Updated: meta_chexpert_age_train.csv\n",
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"Updated: meta_chexpert_gender_test.csv\n",
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"Updated: meta_chexpert_age.csv\n",
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"Updated: meta_mimic_age_train.csv\n",
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"Updated: meta_chexpert_gender.csv\n",
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"Updated: meta_mimic_age.csv\n",
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"Updated: meta_chexpert_race_train.csv\n",
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"Updated: meta_chexpert_race_test.csv\n",
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"Updated: meta_mimic_gender.csv\n",
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"Updated: meta_mimic_race_test.csv\n",
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"Updated: meta_chexpert_age_test.csv\n",
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"Updated: meta_mimic_age_test.csv\n",
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"Updated: meta_mimic_race_train.csv\n",
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"Updated: meta_chexpert_gender_train.csv\n",
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"Updated: meta_mimic_gender_train.csv\n",
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"Updated: meta_chexpert_race.csv\n"
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]
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}
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],
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"source": [
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"import os\n",
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"import pandas as pd\n",
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"\n",
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"# Set your target directory\n",
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"target_dir = \"./\"\n",
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"\n",
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"# Iterate through all CSV files in the directory\n",
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"for file in os.listdir(target_dir):\n",
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" if file.endswith(\".csv\"):\n",
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" file_path = os.path.join(target_dir, file)\n",
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"\n",
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" # Read CSV\n",
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" df = pd.read_csv(file_path)\n",
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"\n",
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" # Rename column if it exists\n",
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" if \"path\" in df.columns:\n",
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" df.rename(columns={\"path\": \"filename\"}, inplace=True)\n",
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" df.to_csv(file_path, index=False)\n",
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" print(f\"Updated: {file}\")\n",
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" else:\n",
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" print(f\"Skipped (no 'path' column): {file}\")\n"
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]
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "fedopt",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.9.19"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 2
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}
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FairFedMed-Oph/Dataset/dataset.zip
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version https://git-lfs.github.com/spec/v1
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oid sha256:7ce8592152ced1fffc144b34b01ee84724cd990816e4d4b318482b562afa594c
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size 60737451837
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FairFedMed-Oph/ReadMe/data_description.txt
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Please refer to the following link for the description of the data and the code that accompanies the data.
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https://github.com/Harvard-Ophthalmology-AI-Lab/FairFedMed
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The paper in which the dataset was first used and released:
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Li, M., Wen, C., Tian, Y., Shi, M., Luo, Y., Huang, H., Fang, Y. and Wang, M., 2025. FairFedMed: Benchmarking Group Fairness in Federated Medical Imaging with FairLoRA. IEEE Transactions on Medical Imaging.
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https://ieeexplore.ieee.org/abstract/document/11205878/
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FairFedMed-Oph/ReadMe/data_summary.csv
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FairFedMed-Oph/ReadMe/data_summary_site1_ethnicity.csv
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FairFedMed-Oph/ReadMe/data_summary_site1_language.csv
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FairFedMed-Oph/ReadMe/data_summary_site1_race.csv
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FairFedMed-Oph/ReadMe/data_summary_site2_ethnicity.csv
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FairFedMed-Oph/ReadMe/data_summary_site2_language.csv
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FairFedMed-Oph/ReadMe/data_summary_site2_race.csv
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FairFedMed-Oph/ReadMe/data_summary_site3_ethnicity.csv
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FairFedMed-Oph/ReadMe/data_summary_site3_language.csv
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FairFedMed-Oph/ReadMe/data_summary_site3_race.csv
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