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  1. FairFedMed-Chest/ReadMe.docx +0 -0
  2. FairFedMed-Chest/data_description.txt +9 -0
  3. FairFedMed-Chest/meta_chexpert_age.csv +0 -0
  4. FairFedMed-Chest/meta_chexpert_age_test.csv +0 -0
  5. FairFedMed-Chest/meta_chexpert_age_train.csv +0 -0
  6. FairFedMed-Chest/meta_chexpert_gender.csv +0 -0
  7. FairFedMed-Chest/meta_chexpert_gender_test.csv +0 -0
  8. FairFedMed-Chest/meta_chexpert_gender_train.csv +0 -0
  9. FairFedMed-Chest/meta_chexpert_race.csv +0 -0
  10. FairFedMed-Chest/meta_chexpert_race_test.csv +0 -0
  11. FairFedMed-Chest/meta_chexpert_race_train.csv +0 -0
  12. FairFedMed-Chest/meta_mimic_age.csv +0 -0
  13. FairFedMed-Chest/meta_mimic_age_test.csv +0 -0
  14. FairFedMed-Chest/meta_mimic_age_train.csv +0 -0
  15. FairFedMed-Chest/meta_mimic_gender.csv +0 -0
  16. FairFedMed-Chest/meta_mimic_gender_test.csv +0 -0
  17. FairFedMed-Chest/meta_mimic_gender_train.csv +0 -0
  18. FairFedMed-Chest/meta_mimic_race.csv +0 -0
  19. FairFedMed-Chest/meta_mimic_race_test.csv +0 -0
  20. FairFedMed-Chest/meta_mimic_race_train.csv +0 -0
  21. FairFedMed-Chest/read_data.ipynb +79 -0
  22. FairFedMed-Oph/Dataset/dataset.zip +3 -0
  23. FairFedMed-Oph/ReadMe/data_description.txt +9 -0
  24. FairFedMed-Oph/ReadMe/data_summary.csv +0 -0
  25. FairFedMed-Oph/ReadMe/data_summary_site1_ethnicity.csv +0 -0
  26. FairFedMed-Oph/ReadMe/data_summary_site1_language.csv +0 -0
  27. FairFedMed-Oph/ReadMe/data_summary_site1_race.csv +0 -0
  28. FairFedMed-Oph/ReadMe/data_summary_site2_ethnicity.csv +0 -0
  29. FairFedMed-Oph/ReadMe/data_summary_site2_language.csv +0 -0
  30. FairFedMed-Oph/ReadMe/data_summary_site2_race.csv +0 -0
  31. FairFedMed-Oph/ReadMe/data_summary_site3_ethnicity.csv +0 -0
  32. FairFedMed-Oph/ReadMe/data_summary_site3_language.csv +0 -0
  33. FairFedMed-Oph/ReadMe/data_summary_site3_race.csv +0 -0
FairFedMed-Chest/ReadMe.docx ADDED
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FairFedMed-Chest/data_description.txt ADDED
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+ Please refer to the following link for the description of the data and the code that accompanies the data.
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+
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+ https://github.com/Harvard-Ophthalmology-AI-Lab/FairFedMed
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+
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+ The paper in which the dataset was first used and released:
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+
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+ Li, M., Wen, C., Tian, Y., Shi, M., Luo, Y., Huang, H., Fang, Y. and Wang, M., 2025. FairFedMed: Benchmarking Group Fairness in Federated Medical Imaging with FairLoRA. IEEE Transactions on Medical Imaging.
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+
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+ https://ieeexplore.ieee.org/abstract/document/11205878/
FairFedMed-Chest/meta_chexpert_age.csv ADDED
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FairFedMed-Chest/meta_chexpert_age_test.csv ADDED
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FairFedMed-Chest/meta_chexpert_age_train.csv ADDED
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FairFedMed-Chest/meta_chexpert_gender.csv ADDED
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FairFedMed-Chest/meta_chexpert_gender_test.csv ADDED
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FairFedMed-Chest/meta_chexpert_gender_train.csv ADDED
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FairFedMed-Chest/meta_chexpert_race.csv ADDED
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FairFedMed-Chest/meta_chexpert_race_test.csv ADDED
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FairFedMed-Chest/meta_chexpert_race_train.csv ADDED
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FairFedMed-Chest/meta_mimic_age.csv ADDED
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FairFedMed-Chest/meta_mimic_age_test.csv ADDED
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FairFedMed-Chest/meta_mimic_age_train.csv ADDED
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FairFedMed-Chest/meta_mimic_gender.csv ADDED
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FairFedMed-Chest/meta_mimic_gender_test.csv ADDED
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FairFedMed-Chest/meta_mimic_gender_train.csv ADDED
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FairFedMed-Chest/meta_mimic_race.csv ADDED
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FairFedMed-Chest/meta_mimic_race_test.csv ADDED
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FairFedMed-Chest/meta_mimic_race_train.csv ADDED
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FairFedMed-Chest/read_data.ipynb ADDED
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+ {
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+ "cells": [
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+ {
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+ "cell_type": "code",
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+ "execution_count": 1,
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "Updated: meta_mimic_race.csv\n",
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+ "Updated: meta_mimic_gender_test.csv\n",
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+ "Updated: meta_chexpert_age_train.csv\n",
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+ "Updated: meta_chexpert_gender_test.csv\n",
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+ "Updated: meta_chexpert_age.csv\n",
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+ "Updated: meta_mimic_age_train.csv\n",
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+ "Updated: meta_chexpert_gender.csv\n",
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+ "Updated: meta_mimic_age.csv\n",
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+ "Updated: meta_chexpert_race_train.csv\n",
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+ "Updated: meta_chexpert_race_test.csv\n",
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+ "Updated: meta_mimic_gender.csv\n",
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+ "Updated: meta_mimic_race_test.csv\n",
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+ "Updated: meta_chexpert_age_test.csv\n",
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+ "Updated: meta_mimic_age_test.csv\n",
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+ "Updated: meta_mimic_race_train.csv\n",
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+ "Updated: meta_chexpert_gender_train.csv\n",
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+ "Updated: meta_mimic_gender_train.csv\n",
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+ "Updated: meta_chexpert_race.csv\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "import os\n",
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+ "import pandas as pd\n",
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+ "\n",
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+ "# Set your target directory\n",
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+ "target_dir = \"./\"\n",
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+ "\n",
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+ "# Iterate through all CSV files in the directory\n",
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+ "for file in os.listdir(target_dir):\n",
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+ " if file.endswith(\".csv\"):\n",
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+ " file_path = os.path.join(target_dir, file)\n",
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+ "\n",
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+ " # Read CSV\n",
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+ " df = pd.read_csv(file_path)\n",
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+ "\n",
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+ " # Rename column if it exists\n",
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+ " if \"path\" in df.columns:\n",
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+ " df.rename(columns={\"path\": \"filename\"}, inplace=True)\n",
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+ " df.to_csv(file_path, index=False)\n",
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+ " print(f\"Updated: {file}\")\n",
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+ " else:\n",
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+ " print(f\"Skipped (no 'path' column): {file}\")\n"
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+ ]
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+ }
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+ ],
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+ "metadata": {
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+ "kernelspec": {
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+ "display_name": "fedopt",
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+ "language": "python",
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+ "name": "python3"
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+ },
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+ "language_info": {
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+ "codemirror_mode": {
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+ "name": "ipython",
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+ "version": 3
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+ },
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+ "file_extension": ".py",
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+ "mimetype": "text/x-python",
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+ "name": "python",
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+ "nbconvert_exporter": "python",
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+ "pygments_lexer": "ipython3",
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+ "version": "3.9.19"
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+ }
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+ },
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+ "nbformat": 4,
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+ "nbformat_minor": 2
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+ }
FairFedMed-Oph/Dataset/dataset.zip ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:7ce8592152ced1fffc144b34b01ee84724cd990816e4d4b318482b562afa594c
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+ size 60737451837
FairFedMed-Oph/ReadMe/data_description.txt ADDED
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+ Please refer to the following link for the description of the data and the code that accompanies the data.
2
+
3
+ https://github.com/Harvard-Ophthalmology-AI-Lab/FairFedMed
4
+
5
+ The paper in which the dataset was first used and released:
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+
7
+ Li, M., Wen, C., Tian, Y., Shi, M., Luo, Y., Huang, H., Fang, Y. and Wang, M., 2025. FairFedMed: Benchmarking Group Fairness in Federated Medical Imaging with FairLoRA. IEEE Transactions on Medical Imaging.
8
+
9
+ https://ieeexplore.ieee.org/abstract/document/11205878/
FairFedMed-Oph/ReadMe/data_summary.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site1_ethnicity.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site1_language.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site1_race.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site2_ethnicity.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site2_language.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site2_race.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site3_ethnicity.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site3_language.csv ADDED
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FairFedMed-Oph/ReadMe/data_summary_site3_race.csv ADDED
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