File size: 3,720 Bytes
2c3c408 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 | #include <tiledb/tiledb> // C++
#include <tiledb/tiledb_experimental>
#include "common.h"
#include <pybind11/numpy.h>
#include <pybind11/pybind11.h>
#include <pybind11/pytypes.h>
#include <pybind11/stl.h>
// #pragma clang diagnostic ignored "-Wdeprecated-declarations"
// #pragma gcc diagnostic ignored "-Wdeprecated-declarations"
namespace libtiledbcpp {
using namespace tiledb;
using namespace std;
namespace py = pybind11;
void init_query(py::module &m) {
py::class_<tiledb::Query>(m, "Query")
//.def(py::init<py::object, py::object, py::iterable, py::object,
// py::object, py::object>())
.def(py::init<Context &, Array &, tiledb_query_type_t>(),
py::keep_alive<1, 2>() /* Keep context alive. */,
py::keep_alive<1, 3>() /* Keep array alive. */)
.def(py::init<Context &, Array &>(),
py::keep_alive<1, 2>() /* Keep context alive. */,
py::keep_alive<1, 3>() /* Keep array alive. */)
// TODO .def("ptr", [&]() -> py::capsule)
.def_property("layout", &Query::query_layout, &Query::set_layout)
.def_property_readonly("query_type", &Query::query_type)
.def_property_readonly("_subarray",
[](Query &query) {
// TODO: Before merge make sure the lifetime of
// the resulting subarray is not tied to this
// query.
Subarray subarray(query.ctx(), query.array());
query.update_subarray_from_query(&subarray);
return subarray;
})
// TODO .def("array") -> Array&
.def("has_results", &Query::has_results)
.def("is_complete",
[](const Query &query) {
return query.query_status() == Query::Status::COMPLETE;
})
.def("finalize", &Query::finalize)
.def("fragment_num", &Query::fragment_num)
.def("fragment_uri", &Query::fragment_uri)
.def("query_status", &Query::query_status)
.def("set_condition", &Query::set_condition)
//.def("set_data_buffer",
// (Query& (Query::*)(const std::string&, void*,
// uint64_t))&Query::set_data_buffer);
.def("set_data_buffer",
[](Query &q, std::string name, py::array a) {
// TODO check_type(a.dtype)
// size_t item_size = a.itemsize();
q.set_data_buffer(name, const_cast<void *>(a.data()), a.size());
})
.def("set_offsets_buffer",
[](Query &q, std::string name, py::array a) {
// TODO check_type(a.dtype)
// size_t item_size = a.itemsize();
q.set_offsets_buffer(name, (uint64_t *)(a.data()), a.size());
})
.def("set_subarray",
[](Query &query, const Subarray &subarray) {
return query.set_subarray(subarray);
})
.def("set_validity_buffer",
[](Query &q, std::string name, py::array a) {
// TODO check_type(a.dtype)
// size_t item_size = a.itemsize();
q.set_validity_buffer(name, (uint8_t *)(a.data()), a.size());
})
.def("submit", &Query::submit, py::call_guard<py::gil_scoped_release>())
/** hackery from another branch... */
//.def("set_fragment_uri", &Query::set_fragment_uri)
//.def("unset_buffer", &Query::unset_buffer)
//.def("set_continuation", [](Query& q) {
// q.ctx().handle_error(
// tiledb_query_set_continuation(q.ctx().ptr().get(), q.ptr().get())
// );
//})
;
}
} // namespace libtiledbcpp
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